Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 5.0e-176 620.9 300 100.0
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 1.6e-142 509.6 298 81.2
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 3.1e-141 505.4 298 78.5
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 1.7e-139 499.6 299 77.6
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 9.3e-138 493.8 299 76.3
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 6.0e-137 491.1 298 75.5
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 3.9e-136 488.4 298 75.2
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 8.7e-136 487.3 300 74.7
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 8.7e-136 487.3 300 74.0
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 9.6e-135 483.8 300 74.0
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 3.6e-134 481.9 317 71.9
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 4.8e-134 481.5 297 74.1
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 8.1e-134 480.7 300 74.3
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 1.8e-133 479.6 298 75.5
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 2.4e-133 479.2 298 73.5
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 6.9e-133 477.6 297 73.7
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 1.2e-132 476.9 297 73.4
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 5.8e-132 474.6 298 72.5
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 5.4e-130 468.0 298 73.2
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 3.6e-126 455.3 297 70.0
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 6.2e-126 454.5 301 71.1
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 8.1e-126 454.1 343 65.0
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 9.9e-124 447.2 300 69.0
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 1.3e-123 446.8 298 69.8
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 2.1e-121 439.5 258 77.9
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 3.5e-121 438.7 298 67.4
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 2.4e-117 426.0 248 79.0
Haze_09670 Corylus avellana HOM05D008272 ORTHO05D010429 6.9e-117 424.5 298 66.8
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 7.6e-116 421.0 346 60.1
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 4.2e-114 415.2 306 63.4
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 4.2e-114 415.2 302 64.9
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 8.7e-112 407.5 249 78.3
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 1.5e-111 406.8 239 77.8
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 2.5e-111 406.0 297 63.0
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 4.1e-109 398.7 288 65.3
PGR031G2232 Punica granatum HOM05D008272 ORTHO05D010429 5.3e-109 398.3 301 64.8
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 6.5e-107 391.3 298 63.4
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 1.9e-106 389.8 251 70.9
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 3.5e-105 385.6 298 61.4
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 1.1e-103 380.6 253 68.8
MBI02_g22115_MAGBIO Magnolia biondii HOM05D008272 ORTHO05D010429 6.9e-101 371.3 290 61.0
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 3.4e-100 369.0 228 74.1
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 5.5e-98 361.7 214 75.7
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 5.1e-96 355.1 297 60.9
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 2.9e-91 339.3 191 80.6
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 2.2e-86 323.2 226 67.7
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 1.2e-76 290.8 149 91.9
Sc03g0008620 Simmondsia chinensis HOM05D008272 ORTHO05D010429 2.9e-75 286.2 191 69.6
Sc16g0006090 Simmondsia chinensis HOM05D008272 ORTHO05D010429 1.5e-74 283.9 246 60.2
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 8.8e-72 274.6 298 50.0
MBI16_g12297_MAGBIO Magnolia biondii HOM05D008272 ORTHO05D010429 2.6e-71 273.1 190 67.9
CAN.G337.128 Capsicum annuum HOM05D008272 ORTHO05D010429 6.3e-70 268.5 285 50.2
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 1.0e-67 261.2 137 92.0
MD11G1219100 Malus domestica HOM05D008272 ORTHO05D010429 1.4e-53 214.2 298 39.9
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 1.2e-49 201.1 120 75.8
Phvul.L001633 Phaseolus vulgaris HOM05D008272 ORTHO05D010429 1.3e-46 191.0 116 75.9
Oeu020117.1 Olea europaea HOM05D008272 ORTHO05D010429 3.9e-27 126.3 114 57.0
Cfa020968 Carpinus fangiana HOM05D008272 ORTHO05D010429 1.7e-22 110.9 62 72.6
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 1.4e-16 91.3 202 29.7
MD03G1201900 Malus domestica HOM05D008272 ORTHO05D010429 2.4e-16 90.5 58 69.0
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 3.1e-16 90.1 214 30.4
arahy.Tifrunner.gnm1.ann1.39PYJI Arachis hypogaea HOM05D008272 ORTHO05D010429 4.0e-16 89.7 109 45.0
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 2.0e-15 87.4 194 34.5
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 2.6e-15 87.0 215 30.7
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 2.6e-15 87.0 233 28.8
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 3.4e-15 86.7 160 31.2
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 4.5e-15 86.3 217 30.9
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 4.5e-15 86.3 241 29.9
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 5.8e-15 85.9 243 28.8
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 5.8e-15 85.9 160 33.1
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 5.8e-15 85.9 189 28.6
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 1.7e-14 84.3 246 28.5
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 2.2e-14 84.0 168 32.1
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 2.9e-14 83.6 195 29.7
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 2.9e-14 83.6 145 33.1
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 3.8e-14 83.2 180 31.7
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 3.8e-14 83.2 217 30.4
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 4.9e-14 82.8 137 33.6
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 4.9e-14 82.8 151 33.1
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 6.4e-14 82.4 160 31.9
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.1e-13 81.6 160 31.9
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.1e-13 81.6 160 31.9
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 1.1e-13 81.6 243 28.0
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 1.1e-13 81.6 216 30.1
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 1.1e-13 81.6 155 32.9
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 1.1e-13 81.6 147 32.7
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 1.1e-13 81.6 126 32.5
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 1.1e-13 81.6 214 29.0
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 1.1e-13 81.6 214 29.0
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 1.4e-13 81.3 185 29.7
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 1.4e-13 81.3 116 37.9
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 1.4e-13 81.3 147 32.7
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 1.9e-13 80.9 186 31.7
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 1.9e-13 80.9 188 30.9
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 2.4e-13 80.5 131 34.4
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 2.4e-13 80.5 116 37.9
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 2.4e-13 80.5 151 32.5
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 2.4e-13 80.5 119 34.5
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 2.4e-13 80.5 269 27.9
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 3.2e-13 80.1 126 35.7
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 4.2e-13 79.7 131 35.1
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 4.2e-13 79.7 131 35.1
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 4.2e-13 79.7 210 29.5
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 4.2e-13 79.7 151 32.5
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 4.2e-13 79.7 146 33.6
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 5.4e-13 79.3 126 34.9
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 5.4e-13 79.3 126 34.9
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 5.4e-13 79.3 216 28.7
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 5.4e-13 79.3 185 31.4
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 5.4e-13 79.3 185 30.3
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 7.1e-13 79.0 185 30.3
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 7.1e-13 79.0 126 34.9
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 7.1e-13 79.0 126 34.9
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 7.1e-13 79.0 126 34.9
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 7.1e-13 79.0 131 36.6
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 7.1e-13 79.0 142 33.1
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 7.1e-13 79.0 151 32.5
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 7.1e-13 79.0 131 33.6
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 7.1e-13 79.0 146 32.9
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 9.3e-13 78.6 186 31.2
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 9.3e-13 78.6 146 32.9
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 9.3e-13 78.6 146 32.9
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 9.3e-13 78.6 121 34.7
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 1.2e-12 78.2 155 32.3
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 1.6e-12 77.8 237 29.5
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 1.6e-12 77.8 120 35.0
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 1.6e-12 77.8 147 31.3
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 2.1e-12 77.4 116 35.3
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 2.1e-12 77.4 185 30.8
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 2.1e-12 77.4 116 35.3
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 2.1e-12 77.4 150 30.7
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 2.7e-12 77.0 228 26.8
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 2.7e-12 77.0 185 29.7
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 2.7e-12 77.0 116 33.6
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 2.7e-12 77.0 116 35.3
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 3.5e-12 76.6 131 32.1
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 3.5e-12 76.6 116 35.3
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 3.5e-12 76.6 116 36.2
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 3.5e-12 76.6 131 32.1
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 4.6e-12 76.3 184 28.8
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 6.0e-12 75.9 116 35.3
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 6.0e-12 75.9 184 28.8
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 6.0e-12 75.9 231 26.8
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 6.0e-12 75.9 250 26.4
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 6.0e-12 75.9 216 27.3
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 7.9e-12 75.5 118 32.2
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 7.9e-12 75.5 185 29.2
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 7.9e-12 75.5 121 34.7
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 7.9e-12 75.5 146 30.8
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 7.9e-12 75.5 146 31.5
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 1.0e-11 75.1 237 30.0
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 1.0e-11 75.1 236 29.2
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 1.3e-11 74.7 184 28.3
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 1.3e-11 74.7 231 26.4
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 1.8e-11 74.3 116 33.6
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 1.8e-11 74.3 116 33.6
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 1.8e-11 74.3 116 33.6
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 2.3e-11 73.9 219 28.8
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 2.3e-11 73.9 116 34.5
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 3.0e-11 73.6 219 28.8
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 3.9e-11 73.2 116 35.3
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 3.9e-11 73.2 218 28.0
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 3.9e-11 73.2 187 27.3
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 3.9e-11 73.2 191 26.2
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 3.9e-11 73.2 185 29.7
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 5.1e-11 72.8 116 33.6
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 6.7e-11 72.4 116 31.9
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 1.1e-10 71.6 219 27.9
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 2.5e-10 70.5 147 27.9
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 2.5e-10 70.5 120 32.5
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 3.3e-10 70.1 116 32.8
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 7.4e-10 68.9 131 34.4
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 7.4e-10 68.9 290 24.5
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 7.4e-10 68.9 116 32.8
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 3.6e-09 66.6 224 26.8
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 5.3e-08 62.8 157 27.4
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 2.2e-06 57.4 48 52.1
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 4.9e-06 56.2 121 29.8


User provided reference genes

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