Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G137100 Populus trichocarpa HOM05D006458 ORTHO05D008433 6.0e-82 307.4 147 100.0
Sabra16G0288000 Salix brachista HOM05D006458 ORTHO05D008433 1.4e-75 286.2 147 91.2
Manes.03G125000 Manihot esculenta HOM05D006458 ORTHO05D008433 1.7e-68 262.7 145 84.8
Lj1A870G91 Lonicera japonica HOM05D006458 ORTHO05D008433 2.3e-65 252.3 147 78.9
Duzib170G0083 Durio zibethinus HOM05D006458 ORTHO05D008433 5.1e-65 251.1 147 78.2
Duzib170G1029 Durio zibethinus HOM05D006458 ORTHO05D008433 5.1e-65 251.1 147 78.2
Thecc.07G043100 Theobroma cacao HOM05D006458 ORTHO05D008433 5.1e-65 251.1 147 78.9
Hma1.2p1_0673F.1_g201190 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 6.7e-65 250.8 148 79.7
Hma1.2p1_1271F.1_g271730 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 6.7e-65 250.8 148 80.4
Ciclev10009738m.g Citrus clementina HOM05D006458 ORTHO05D008433 1.9e-64 249.2 150 80.7
Dinv22275 Davidia involucrata HOM05D006458 ORTHO05D008433 2.5e-64 248.8 147 79.6
ClCG10G005510 Citrullus lanatus HOM05D006458 ORTHO05D008433 3.3e-64 248.4 147 78.2
CiPaw.12G128400 Carya illinoinensis HOM05D006458 ORTHO05D008433 5.7e-64 247.7 148 79.1
CANSAT11G2101 Cannabis sativa HOM05D006458 ORTHO05D008433 7.4e-64 247.3 147 78.9
Duzib170G0736 Durio zibethinus HOM05D006458 ORTHO05D008433 7.4e-64 247.3 147 76.9
Prupe.4G210000 Prunus persica HOM05D006458 ORTHO05D008433 7.4e-64 247.3 144 79.2
QL08p011516 Quercus lobata HOM05D006458 ORTHO05D008433 7.4e-64 247.3 141 82.3
Glyma.08G314400 Glycine max HOM05D006458 ORTHO05D008433 1.3e-63 246.5 142 82.4
CsaV3_3G005240 Cucumis sativus L. HOM05D006458 ORTHO05D008433 1.6e-63 246.1 147 76.9
MD11G1221600 Malus domestica HOM05D006458 ORTHO05D008433 2.2e-63 245.7 149 76.5
Sed0021211 Sechium edule HOM05D006458 ORTHO05D008433 2.2e-63 245.7 147 76.2
CSS0046732 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 2.8e-63 245.4 128 85.9
Cfa020375 Carpinus fangiana HOM05D006458 ORTHO05D008433 2.8e-63 245.4 148 79.1
FAN11G3779 Fragaria x ananassa HOM05D006458 ORTHO05D008433 4.8e-63 244.6 146 76.7
Sabra11G0123000 Salix brachista HOM05D006458 ORTHO05D008433 4.8e-63 244.6 178 71.3
Cpa.g.sc97.30 Carica papaya HOM05D006458 ORTHO05D008433 6.3e-63 244.2 147 78.9
FvH4_3g22360 Fragaria vesca HOM05D006458 ORTHO05D008433 6.3e-63 244.2 146 76.7
Gorai.013G160500 Gossypium raimondii HOM05D006458 ORTHO05D008433 6.3e-63 244.2 147 74.8
TWI39G1057 Tripterygium wilfordii HOM05D006458 ORTHO05D008433 6.3e-63 244.2 146 78.1
VMungo0540G0475 Vigna mungo HOM05D006458 ORTHO05D008433 6.3e-63 244.2 142 81.7
Phvul.005G120100 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 8.2e-63 243.8 141 81.6
MD03G1206100 Malus domestica HOM05D006458 ORTHO05D008433 1.1e-62 243.4 150 77.3
Phvul.006G040400 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 1.1e-62 243.4 142 81.0
Gohir.A13G138900 Gossypium hirsutum HOM05D006458 ORTHO05D008433 1.4e-62 243.0 147 74.1
PGSC0003DMG400001097 Solanum tuberosum HOM05D006458 ORTHO05D008433 1.4e-62 243.0 147 74.8
Glyma.18G099800 Glycine max HOM05D006458 ORTHO05D008433 1.8e-62 242.7 142 80.3
Dinv40738 Davidia involucrata HOM05D000653 ORTHO05D008581 3.1e-62 241.9 138 81.2
CSS0025826 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 4.1e-62 241.5 134 81.3
Thhalv10014954m.g Eutrema salsugineum HOM05D006458 ORTHO05D008433 4.1e-62 241.5 145 75.9
Medtr3g051110 Medicago truncatula HOM05D006458 ORTHO05D008433 4.1e-62 241.5 148 76.4
Solyc12g005150.2 Solanum lycopersicum HOM05D006458 ORTHO05D008433 4.1e-62 241.5 147 74.1
TAR626G0847 Trochodendron aralioides HOM05D006458 ORTHO05D008433 4.1e-62 241.5 142 78.2
Gorai.002G087500 Gossypium raimondii HOM05D006458 ORTHO05D008433 9.0e-62 240.4 145 72.4
Gohir.D01G065600 Gossypium hirsutum HOM05D006458 ORTHO05D008433 1.2e-61 240.0 145 72.4
CARHR268190 Cardamine hirsuta HOM05D006458 ORTHO05D008433 1.5e-61 239.6 146 76.7
Sopen12g001140 Solanum pennellii HOM05D006458 ORTHO05D008433 1.5e-61 239.6 147 73.5
AT5G54855 Arabidopsis thaliana HOM05D006458 ORTHO05D008433 2.0e-61 239.2 146 76.7
arahy.Tifrunner.gnm1.ann1.JDXG8H Arachis hypogaea HOM05D006458 ORTHO05D008433 2.0e-61 239.2 143 81.1
Ca_14717_v3 Cicer arietinum L. HOM05D006458 ORTHO05D008433 2.0e-61 239.2 148 77.0
arahy.Tifrunner.gnm1.ann1.717SVK Arachis hypogaea HOM05D006458 ORTHO05D008433 2.6e-61 238.8 143 81.1
CAN.G416.46 Capsicum annuum HOM05D006458 ORTHO05D008433 2.6e-61 238.8 147 74.8
Lj6g0005932 Lotus japonicus HOM05D006458 ORTHO05D008433 2.6e-61 238.8 147 77.6
Cc05_g13560 Coffea canephora HOM05D006458 ORTHO05D008433 3.4e-61 238.4 150 72.7
Gohir.A01G078500 Gossypium hirsutum HOM05D006458 ORTHO05D008433 3.4e-61 238.4 145 73.1
Psat5g192520 Pisum sativum HOM05D006458 ORTHO05D008433 3.4e-61 238.4 146 76.0
AL8G30300 Arabidopsis lyrata HOM05D006458 ORTHO05D008433 4.5e-61 238.0 146 76.0
Nitab4.5_0000749g0130 Nicotiana tabacum HOM05D006458 ORTHO05D008433 4.5e-61 238.0 149 73.8
Sp6g16820 Schrenkiella parvula HOM05D006458 ORTHO05D008433 4.5e-61 238.0 146 76.0
FAN21G0544 Fragaria x ananassa HOM05D006458 ORTHO05D008433 7.6e-61 237.3 146 75.3
GSVIVG01037612001 Vitis vinifera HOM05D006458 ORTHO05D008433 1.0e-60 236.9 130 80.8
TAR629G1817 Trochodendron aralioides HOM05D006458 ORTHO05D008433 1.3e-60 236.5 141 78.7
Gohir.D13G143700 Gossypium hirsutum HOM05D006458 ORTHO05D008433 1.7e-60 236.1 147 72.8
Haze_09655 Corylus avellana HOM05D000653 ORTHO05D008581 2.2e-60 235.7 142 81.0
Nitab4.5_0000653g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 2.2e-60 235.7 149 71.8
SalBow5G1944 Salvia bowleyana HOM05D006458 ORTHO05D008433 2.2e-60 235.7 141 75.9
DCAR_010044 Daucus carota HOM05D006458 ORTHO05D008433 3.8e-60 235.0 128 82.0
HanXRQChr11g0336301 Helianthus annuus HOM05D006458 ORTHO05D008433 5.0e-60 234.6 144 75.7
Aa31LG3G10770 Aethionema arabicum HOM05D006458 ORTHO05D008433 6.5e-60 234.2 146 73.3
Migut.M01780 Erythranthe guttata HOM05D006458 ORTHO05D008433 6.5e-60 234.2 138 79.7
Carub.0008s1515 Capsella rubella HOM05D006458 ORTHO05D008433 8.5e-60 233.8 146 74.0
Nitab4.5_0004336g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 8.5e-60 233.8 147 75.5
RcHm_v2.0_Chr5g0038891 Rosa chinensis HOM05D006458 ORTHO05D008433 8.5e-60 233.8 142 76.1
COL.COLO4_09642 Corchorus olitorius HOM05D000451 ORTHO05D008433 1.1e-59 233.4 126 84.9
vmacro09731 Vaccinium macrocarpon HOM05D006458 ORTHO05D008433 1.4e-59 233.0 182 63.2
SGA_v2.0_scaffold7G03986 Striga asiatica HOM05D006458 ORTHO05D008433 2.5e-59 232.3 135 76.3
Lalb_Chr15g0081001 Lupinus albus HOM05D006458 ORTHO05D008433 3.2e-59 231.9 147 72.8
BcaB08g35852 Brassica carinata HOM05D006458 ORTHO05D008433 4.2e-59 231.5 146 74.7
THA.LOC104817659 Tarenaya hassleriana HOM05D006458 ORTHO05D008433 7.2e-59 230.7 146 74.7
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 9.4e-59 230.3 124 83.1
MSTRG.15157 Avicennia marina HOM05D006458 ORTHO05D008433 9.4e-59 230.3 147 70.7
BcaC04g20291 Brassica carinata HOM05D006458 ORTHO05D008433 1.6e-58 229.6 146 74.0
BraA10t43315Z Brassica rapa HOM05D006458 ORTHO05D008433 1.6e-58 229.6 146 74.0
Peaxi162Scf00450g00732 Petunia axillaris HOM05D006458 ORTHO05D008433 2.1e-58 229.2 147 71.4
A10p12190 Brassica napus HOM05D006458 ORTHO05D008433 4.6e-58 228.0 146 74.0
PSO541G1528 Papaver somniferum HOM05D006458 ORTHO05D008433 6.1e-58 227.6 137 74.5
Nitab4.5_0001604g0080 Nicotiana tabacum HOM05D006458 ORTHO05D008433 7.9e-58 227.3 146 72.6
PSO675G3423 Papaver somniferum HOM05D006458 ORTHO05D008433 1.8e-57 226.1 137 74.5
Lsat_1_v5_gn_7_109420 Lactuca sativa HOM05D006458 ORTHO05D008433 2.3e-57 225.7 139 74.8
AUR62015736 Chenopodium quinoa HOM05D006458 ORTHO05D008433 1.1e-56 223.4 134 76.1
AUR62020475 Chenopodium quinoa HOM05D006458 ORTHO05D008433 1.1e-56 223.4 134 76.1
Aqoxy2G01543 Aquilegia oxysepala HOM05D006458 ORTHO05D008433 1.5e-56 223.0 124 78.2
C09p45410 Brassica napus HOM05D006458 ORTHO05D008433 1.5e-56 223.0 147 72.1
Sc03g0008720 Simmondsia chinensis HOM05D006458 ORTHO05D008433 1.5e-56 223.0 147 70.7
RhsimUnG0251700 Rhododendron simsii HOM05D006458 ORTHO05D008433 2.5e-56 222.2 208 54.3
CDE05G1373 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 4.3e-56 221.5 139 72.7
PGR031G1917 Punica granatum HOM05D006458 ORTHO05D008433 2.8e-55 218.8 149 71.1
Zm00001eb178010 Zea mays HOM05D006458 ORTHO05D008433 8.2e-55 217.2 138 70.3
Os02g0317800 Oryza sativa ssp. japonica HOM05D006458 ORTHO05D008433 1.1e-54 216.9 143 68.5
ATR0752G141 Amborella trichopoda HOM05D006458 ORTHO05D008433 3.1e-54 215.3 133 69.9
CDE02G3449 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 3.1e-54 215.3 137 73.0
MBI18_g24806_MAGBIO Magnolia biondii HOM05D006458 ORTHO05D008433 3.1e-54 215.3 136 74.3
SalBow7G4274 Salvia bowleyana HOM05D006458 ORTHO05D008433 4.1e-54 214.9 168 61.9
EL10Ac4g07850 Beta vulgaris HOM05D006458 ORTHO05D008433 5.3e-54 214.5 134 74.6
Ah.04g165770 Amaranthus hybridus HOM05D006458 ORTHO05D008433 2.6e-53 212.2 132 74.2
Hund02079 Selenicereus undatus HOM05D006458 ORTHO05D008433 2.9e-52 208.8 157 65.6
unitig_8.g4602 Utricularia gibba HOM05D006458 ORTHO05D008433 1.4e-49 199.9 126 73.0
CSS0035522 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 3.9e-49 198.4 112 82.1
Nn1g03576 Nelumbo nucifera HOM05D006458 ORTHO05D008433 9.7e-48 193.7 126 73.0
HPP92_005293 Vanilla planifolia HOM05D006458 ORTHO05D008433 9.7e-48 193.7 134 65.7
ECA236G2465 Erigeron canadensis HOM05D000653 ORTHO05D008581 2.5e-43 179.1 135 64.4
MELO3C031911.2 Cucumis melo HOM05D006458 ORTHO05D008433 1.6e-42 176.4 101 80.2
Oeu062597.2 Olea europaea HOM05D006458 ORTHO05D008433 2.1e-42 176.0 94 85.1
Eucgr.F03456 Eucalyptus grandis HOM05D006458 ORTHO05D008433 3.3e-40 168.7 93 81.7
SalBow7G3069 Salvia bowleyana HOM05D006458 ORTHO05D008433 8.2e-39 164.1 96 77.1
Atru.chr2.3327 Acer truncatum HOM05D006458 ORTHO05D008433 2.5e-35 152.5 96 76.0
SEGI_29279 Sequoiadendron giganteum HOM05D006458 ORTHO05D008433 1.2e-34 150.2 104 68.3
Nitab4.5_0000296g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 2.3e-33 146.0 97 68.0
AUR62029374 Chenopodium quinoa HOM05D001363 ORTHO05D006255 1.1e-22 110.5 110 56.4
Atru.chr2.3388 Acer truncatum HOM05D006458 ORTHO05D008433 7.0e-22 107.8 66 78.8
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 2.0e-13 79.7 43 79.1
RcHm_v2.0_Chr5g0038871 Rosa chinensis HOM05D006458 ORTHO05D008433 8.6e-12 74.3 47 66.0
TPR.G13209 Trifolium pratense HOM05D006458 ORTHO05D008433 3.3e-11 72.4 41 75.6
FAN25G2931 Fragaria x ananassa HOM05D006458 ORTHO05D008433 4.0e-09 65.5 35 91.4
MD13G1229600 Malus domestica HOM05D006458 ORTHO05D245398 3.4e-08 62.4 47 63.8
Nitab4.5_0000286g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 1.1e-06 57.4 59 52.5
A06p35450 Brassica napus HOM05D006458 ORTHO05D041657 4.1e-06 55.5 39 64.1
BraA06t26468Z Brassica rapa HOM05D006458 ORTHO05D041657 4.1e-06 55.5 39 64.1


User provided reference genes

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