Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G134600 Populus trichocarpa HOM05D006536 ORTHO05D005877 1.6e-74 282.7 145 100.0
TWI39G0980 Tripterygium wilfordii HOM05D006536 ORTHO05D005877 1.3e-20 103.6 144 39.6
SHI31832 Sapria himalayana HOM05D006536 ORTHO05D005877 1.6e-18 96.7 134 37.3
SHI26637 Sapria himalayana HOM05D006536 ORTHO05D005877 5.1e-17 91.7 130 39.2
CiPaw.12G126700 Carya illinoinensis HOM05D006536 ORTHO05D005877 8.7e-17 90.9 142 38.7
SHI26638 Sapria himalayana HOM05D006536 ORTHO05D005877 1.1e-16 90.5 130 39.2
SHI26633 Sapria himalayana HOM05D006536 ORTHO05D005877 4.3e-16 88.6 130 39.2
SHI26644 Sapria himalayana HOM05D006536 ORTHO05D005877 9.7e-16 87.4 141 35.5
SHI26699 Sapria himalayana HOM05D006536 ORTHO05D005877 2.0e-13 79.7 103 40.8
Cfa020407 Carpinus fangiana HOM05D006536 ORTHO05D005877 2.6e-13 79.3 144 37.5
Ciclev10009848m.g Citrus clementina HOM05D007475 ORTHO05D005877 2.6e-13 79.3 143 37.1
SHI27896 Sapria himalayana HOM05D006536 ORTHO05D005877 5.9e-13 78.2 103 40.8
Thecc.07G051300 Theobroma cacao HOM05D006536 ORTHO05D005877 5.9e-13 78.2 143 37.1
Manes.15G075900 Manihot esculenta HOM05D007475 ORTHO05D005877 1.7e-12 76.6 142 34.5
Cfa020408 Carpinus fangiana HOM05D006536 ORTHO05D005877 3.8e-12 75.5 150 34.7
COL.COLO4_09580 Corchorus olitorius HOM05D015826 ORTHO05D005877 5.0e-12 75.1 148 35.8
Duzib268G0059 Durio zibethinus HOM05D006536 ORTHO05D005877 8.5e-12 74.3 141 31.2
Manes.03G123600 Manihot esculenta HOM05D006536 ORTHO05D005877 2.5e-11 72.8 136 33.1
COL.COLO4_15402 Corchorus olitorius HOM05D006536 ORTHO05D005877 5.5e-11 71.6 146 37.0
Ciclev10009789m.g Citrus clementina HOM05D007475 ORTHO05D009529 1.2e-10 70.5 150 32.7
Cpa.g.sc97.59 Carica papaya HOM05D007475 ORTHO05D009529 2.1e-10 69.7 151 34.4
CDE11G0063 Ceratophyllum demersum HOM05D006536 ORTHO05D005877 2.7e-10 69.3 142 36.6
CDE05G1907 Ceratophyllum demersum HOM05D006536 ORTHO05D005877 1.4e-09 67.0 140 37.1
Atru.chr2.3226 Acer truncatum HOM05D001264 ORTHO05D001167 2.3e-09 66.2 141 31.2
Dinv26537 Davidia involucrata HOM05D006536 ORTHO05D005877 6.7e-09 64.7 139 32.4
Gorai.009G426600 Gossypium raimondii HOM05D015826 ORTHO05D005877 8.8e-09 64.3 146 34.2
AL8G30160 Arabidopsis lyrata HOM05D007475 ORTHO05D009529 1.1e-08 63.9 165 32.1
AT5G54740 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 1.5e-08 63.5 167 32.3
Carub.0007s1370 Capsella rubella HOM05D007475 ORTHO05D009529 1.5e-08 63.5 151 31.1
vmacro11763 Vaccinium macrocarpon HOM05D006536 ORTHO05D005877 2.0e-08 63.2 115 36.5
CDE11G0553 Ceratophyllum demersum HOM05D006536 ORTHO05D005877 3.3e-08 62.4 140 35.7
Manes.03G123318 Manihot esculenta HOM05D006536 ORTHO05D005877 4.3e-08 62.0 135 31.9
Carub.0008s0615 Capsella rubella HOM05D007475 ORTHO05D009529 7.4e-08 61.2 150 31.3
Eucgr.F03431 Eucalyptus grandis HOM05D006536 ORTHO05D005877 9.7e-08 60.8 152 30.9
Dinv40717 Davidia involucrata HOM05D006536 ORTHO05D005877 1.3e-07 60.5 106 38.7
PGR083G0669 Punica granatum HOM05D006536 ORTHO05D005877 1.3e-07 60.5 161 31.1
Solyc08g080480.3 Solanum lycopersicum HOM05D006536 ORTHO05D005877 1.3e-07 60.5 143 29.4
Thhalv10026791m.g Eutrema salsugineum HOM05D007475 ORTHO05D009529 1.7e-07 60.1 169 29.6
Eucgr.F00977 Eucalyptus grandis HOM05D006536 ORTHO05D005877 2.2e-07 59.7 139 35.3
SalBow3G0084 Salvia bowleyana HOM05D003262 ORTHO05D003608 3.7e-07 58.9 152 30.9
CARHR289420 Cardamine hirsuta HOM05D007475 ORTHO05D009529 4.8e-07 58.5 157 29.9
COL.COLO4_09579 Corchorus olitorius HOM05D006536 ORTHO05D005877 4.8e-07 58.5 125 30.4
Eucgr.F00976 Eucalyptus grandis HOM05D006536 ORTHO05D005877 4.8e-07 58.5 144 36.8
Gohir.D01G062500 Gossypium hirsutum HOM05D015826 ORTHO05D005877 6.3e-07 58.2 141 32.6
PGR083G1686 Punica granatum HOM05D006536 ORTHO05D005877 6.3e-07 58.2 149 30.2
Sp6g16690 Schrenkiella parvula HOM05D007475 ORTHO05D009529 6.3e-07 58.2 168 31.0
THA.LOC104813415 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 6.3e-07 58.2 160 30.0
Gohir.A01G075200 Gossypium hirsutum HOM05D015826 ORTHO05D005877 8.2e-07 57.8 140 32.9
Gorai.002G083200 Gossypium raimondii HOM05D015826 ORTHO05D005877 8.2e-07 57.8 141 32.6
Nitab4.5_0000397g0170 Nicotiana tabacum HOM05D006536 ORTHO05D005877 8.2e-07 57.8 145 29.7
Sabra11G0120700 Salix brachista HOM05D006536 ORTHO05D005877 8.2e-07 57.8 138 28.3
THA.LOC104822213 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 8.2e-07 57.8 152 30.3
HanXRQChr13g0408641 Helianthus annuus HOM05D009374 ORTHO05D005877 1.1e-06 57.4 151 26.5
vmacro11762 Vaccinium macrocarpon HOM05D006536 ORTHO05D005877 1.1e-06 57.4 121 33.9
Nitab4.5_0000472g0270 Nicotiana tabacum HOM05D006536 ORTHO05D005877 1.4e-06 57.0 147 29.3
Peaxi162Scf00450g00873 Petunia axillaris HOM05D006536 ORTHO05D005877 1.4e-06 57.0 147 29.3
Aa31LG3G10660 Aethionema arabicum HOM05D007475 ORTHO05D009529 1.8e-06 56.6 154 31.2
AUR62015663 Chenopodium quinoa HOM05D009374 ORTHO05D005877 1.8e-06 56.6 131 30.5
Peaxi162Scf00450g00854 Petunia axillaris HOM05D006536 ORTHO05D005877 2.4e-06 56.2 144 29.2
AT4G27140 Arabidopsis thaliana HOM05D007475 ORTHO05D009529 4.1e-06 55.5 155 29.0
Nitab4.5_0006023g0020 Nicotiana tabacum HOM05D006536 ORTHO05D005877 5.3e-06 55.1 145 26.9
Peaxi162Scf00057g00136 Petunia axillaris HOM05D006536 ORTHO05D005877 5.3e-06 55.1 146 28.1
THA.LOC104817656 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 6.9e-06 54.7 158 30.4
THA.LOC104822214 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 6.9e-06 54.7 158 30.4
THA.LOC104822215 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 6.9e-06 54.7 158 30.4
CARHR058020 Cardamine hirsuta HOM05D007475 ORTHO05D009529 9.1e-06 54.3 157 29.9
CARHR289410 Cardamine hirsuta HOM05D007475 ORTHO05D009529 9.1e-06 54.3 157 29.3


User provided reference genes

Program Settings