Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G132900 Populus trichocarpa HOM05D007184 ORTHO05D008987 1.0e-117 426.8 224 100.0
Sabra11G0119700 Salix brachista HOM05D007184 ORTHO05D008987 9.1e-98 360.5 225 87.6
Manes.03G122800 Manihot esculenta HOM05D007184 ORTHO05D008987 1.1e-74 283.9 225 72.4
TPR.G36807 Trifolium pratense HOM05D007184 ORTHO05D008987 2.6e-68 262.7 226 66.8
Thecc.07G052800 Theobroma cacao HOM05D007184 ORTHO05D008987 2.2e-67 259.6 226 67.3
CSS0032425 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 2.9e-67 259.2 228 67.5
CSS0036378 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 2.9e-67 259.2 228 67.5
Peaxi162Scf01086g00015 Petunia axillaris HOM05D007184 ORTHO05D008987 3.7e-67 258.8 225 66.2
Nitab4.5_0000397g0060 Nicotiana tabacum HOM05D007184 ORTHO05D008987 6.4e-67 258.1 225 67.6
Oeu062614.1 Olea europaea HOM05D007184 ORTHO05D008987 1.1e-66 257.3 229 66.8
FvH4_3g21830 Fragaria vesca HOM05D007184 ORTHO05D008987 1.4e-66 256.9 226 66.4
FAN11G2616 Fragaria x ananassa HOM05D007184 ORTHO05D008987 1.4e-66 256.9 226 66.4
FAN25G3727 Fragaria x ananassa HOM05D007184 ORTHO05D008987 1.4e-66 256.9 226 66.8
Lj3g0025244 Lotus japonicus HOM05D007184 ORTHO05D008987 1.4e-66 256.9 225 65.8
Gohir.A13G141300 Gossypium hirsutum HOM05D007184 ORTHO05D008987 3.2e-66 255.8 226 67.3
Gohir.D13G146000 Gossypium hirsutum HOM05D007184 ORTHO05D008987 3.2e-66 255.8 226 66.8
Medtr2g082930 Medicago truncatula HOM05D007184 ORTHO05D008987 4.1e-66 255.4 226 65.5
Prupe.4G202500 Prunus persica HOM05D007184 ORTHO05D008987 7.1e-66 254.6 226 65.5
TWI38G1172 Tripterygium wilfordii HOM05D007184 ORTHO05D008987 9.2e-66 254.2 237 62.9
Duzib268G1070 Durio zibethinus HOM05D007184 ORTHO05D008987 1.2e-65 253.8 227 66.1
AUR62015645 Chenopodium quinoa HOM05D007184 ORTHO05D008987 2.7e-65 252.7 225 65.8
CiPaw.11G183700 Carya illinoinensis HOM05D007184 ORTHO05D008987 7.8e-65 251.1 233 65.7
COL.COLO4_09571 Corchorus olitorius HOM05D007184 ORTHO05D008987 7.8e-65 251.1 225 66.2
FAN21G0378 Fragaria x ananassa HOM05D007184 ORTHO05D008987 7.8e-65 251.1 226 65.5
RcHm_v2.0_Chr4g0410121 Rosa chinensis HOM05D007184 ORTHO05D008987 7.8e-65 251.1 226 65.0
Gorai.013G163800 Gossypium raimondii HOM05D007184 ORTHO05D008987 1.3e-64 250.4 226 66.4
RcHm_v2.0_Chr5g0037571 Rosa chinensis HOM05D007184 ORTHO05D008987 1.7e-64 250.0 226 65.0
AUR62020554 Chenopodium quinoa HOM05D007184 ORTHO05D008987 3.0e-64 249.2 225 64.9
Hma1.2p1_1869F.1_g306030 Hydrangea macrophylla HOM05D007184 ORTHO05D008987 3.0e-64 249.2 234 65.0
Nitab4.5_0009192g0030 Nicotiana tabacum HOM05D007184 ORTHO05D008987 3.0e-64 249.2 193 72.5
QL08p013467 Quercus lobata HOM05D007184 ORTHO05D008987 3.9e-64 248.8 223 64.1
EL10Ac4g07971 Beta vulgaris HOM05D007184 ORTHO05D008987 5.1e-64 248.4 230 63.9
ClCG10G005800 Citrullus lanatus HOM05D007184 ORTHO05D008987 5.1e-64 248.4 226 65.9
Ciclev10009433m.g Citrus clementina HOM05D007184 ORTHO05D008987 6.6e-64 248.1 229 65.1
Glyma.13G287300 Glycine max HOM05D007184 ORTHO05D008987 8.6e-64 247.7 225 64.9
Cfa020415 Carpinus fangiana HOM05D007184 ORTHO05D008987 1.5e-63 246.9 226 65.5
PGSC0003DMG400019260 Solanum tuberosum HOM05D007184 ORTHO05D008987 1.5e-63 246.9 182 72.5
CsaV3_3G005480 Cucumis sativus L. HOM05D007184 ORTHO05D008987 2.5e-63 246.1 226 65.9
Lalb_Chr14g0366141 Lupinus albus HOM05D007184 ORTHO05D008987 3.3e-63 245.7 224 63.4
MELO3C016627.2 Cucumis melo HOM05D007184 ORTHO05D008987 5.6e-63 245.0 225 65.3
QL08p013337 Quercus lobata HOM05D007184 ORTHO05D008987 1.6e-62 243.4 231 62.3
Solyc07g064100.1 Solanum lycopersicum HOM05D007184 ORTHO05D008987 1.6e-62 243.4 182 72.0
Sopen07g032240 Solanum pennellii HOM05D007184 ORTHO05D008987 1.6e-62 243.4 182 72.0
Psat5g251800 Pisum sativum HOM05D007184 ORTHO05D008987 2.8e-62 242.7 226 64.6
Ca_01753_v3 Cicer arietinum L. HOM05D007184 ORTHO05D008987 3.6e-62 242.3 226 65.5
HanXRQChr05g0159221 Helianthus annuus HOM05D007184 ORTHO05D008987 1.1e-61 240.7 206 69.4
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 3.1e-61 239.2 176 75.0
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 3.1e-61 239.2 181 74.0
Cc05_g13240 Coffea canephora HOM05D007184 ORTHO05D008987 5.2e-61 238.4 204 65.7
Glyma.12G214300 Glycine max HOM05D007184 ORTHO05D008987 1.2e-60 237.3 225 64.0
SalBow7G0016 Salvia bowleyana HOM05D007184 ORTHO05D008987 2.0e-60 236.5 188 70.2
CANSAT11G2419 Cannabis sativa HOM05D007184 ORTHO05D008987 4.4e-60 235.3 203 66.5
Phvul.005G091600 Phaseolus vulgaris HOM05D007184 ORTHO05D008987 7.6e-60 234.6 225 64.0
Migut.H01857 Erythranthe guttata HOM05D007184 ORTHO05D008987 9.9e-60 234.2 182 72.0
MD03G1211500 Malus domestica HOM05D007184 ORTHO05D008987 1.7e-59 233.4 166 76.5
TAR624G0273 Trochodendron aralioides HOM05D007184 ORTHO05D008987 3.7e-59 232.3 227 61.7
VMungo1080G0323 Vigna mungo HOM05D007184 ORTHO05D008987 4.9e-59 231.9 224 63.4
unitig_52.g17357 Utricularia gibba HOM05D007184 ORTHO05D008987 6.4e-59 231.5 181 70.7
arahy.Tifrunner.gnm1.ann1.538Z4G Arachis hypogaea HOM05D007184 ORTHO05D008987 1.9e-58 229.9 242 58.3
BcaB07g33556 Brassica carinata HOM05D007184 ORTHO05D008987 7.1e-58 228.0 227 63.4
Cpa.g.sc97.69 Carica papaya HOM05D007184 ORTHO05D008987 2.7e-57 226.1 148 82.4
Thhalv10011779m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 3.5e-57 225.7 181 71.8
GSVIVG01014606001 Vitis vinifera HOM05D007184 ORTHO05D008987 3.5e-57 225.7 212 63.2
BcaC08g43280 Brassica carinata HOM05D007184 ORTHO05D008987 7.8e-57 224.6 224 62.5
C06p06300 Brassica napus HOM05D007184 ORTHO05D008987 7.8e-57 224.6 224 62.5
BolC6t35739H Brassica oleracea HOM05D007184 ORTHO05D008987 7.8e-57 224.6 224 62.5
QL08p013286 Quercus lobata HOM05D007184 ORTHO05D008987 1.0e-56 224.2 229 59.4
PGR031G2970 Punica granatum HOM05D007184 ORTHO05D008987 1.3e-56 223.8 179 69.8
Nn1g03662 Nelumbo nucifera HOM05D007184 ORTHO05D008987 1.7e-56 223.4 147 80.3
THA.LOC104817896 Tarenaya hassleriana HOM05D007184 ORTHO05D008987 1.7e-56 223.4 153 79.1
Atru.BG.150.p Acer truncatum HOM05D007184 ORTHO05D008987 2.3e-56 223.0 158 77.2
A06p02680 Brassica napus HOM05D007184 ORTHO05D008987 2.3e-56 223.0 224 62.1
BraA06t23477Z Brassica rapa HOM05D007184 ORTHO05D008987 1.5e-55 220.3 224 61.2
Carub.0001s4001 Capsella rubella HOM05D007184 ORTHO05D008987 1.9e-55 219.9 182 70.3
CARHR041120 Cardamine hirsuta HOM05D007184 ORTHO05D008987 1.9e-55 219.9 184 69.6
AT1G51100 Arabidopsis thaliana HOM05D007184 ORTHO05D008987 3.3e-55 219.2 183 68.9
Sp1g37830 Schrenkiella parvula HOM05D007184 ORTHO05D008987 7.3e-55 218.0 180 71.1
AL1G58900 Arabidopsis lyrata HOM05D007184 ORTHO05D008987 9.6e-55 217.6 183 68.9
Lj1P863T33 Lonicera japonica HOM05D007184 ORTHO05D008987 1.2e-54 217.2 182 67.6
PSO541G2827 Papaver somniferum HOM05D007184 ORTHO05D008987 1.2e-52 210.7 228 59.6
Aqoxy4G02072 Aquilegia oxysepala HOM05D007184 ORTHO05D008987 2.0e-52 209.9 182 63.7
PSO675G5359 Papaver somniferum HOM05D007184 ORTHO05D008987 3.4e-52 209.1 228 60.1
Aa31LG10G3410 Aethionema arabicum HOM05D006358 ORTHO05D008185 4.4e-52 208.8 172 69.8
Haze_09610 Corylus avellana HOM05D007184 ORTHO05D008987 7.6e-52 208.0 225 61.3
ClCG03G004100 Citrullus lanatus HOM05D007184 ORTHO05D008987 9.9e-52 207.6 183 66.7
Sed0004555 Sechium edule HOM05D007184 ORTHO05D008987 1.1e-50 204.1 182 63.2
MBI12_g14496_MAGBIO Magnolia biondii HOM05D007184 ORTHO05D008987 9.6e-47 191.0 199 57.8
QL08p013784 Quercus lobata HOM05D007184 ORTHO05D008987 4.8e-46 188.7 230 55.2
CDE05G0960 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 4.4e-44 182.2 128 75.8
ATR0073G001 Amborella trichopoda HOM05D007184 ORTHO05D008987 2.1e-41 173.3 133 68.4
CDE11G0483 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 1.0e-40 171.0 133 68.4
Os01g0676200 Oryza sativa ssp. japonica HOM05D007184 ORTHO05D008987 8.7e-40 167.9 159 58.5
DCAR_010017 Daucus carota HOM05D007184 ORTHO05D008987 3.3e-39 166.0 107 85.0
Zm00001eb156870 Zea mays HOM05D007184 ORTHO05D008987 2.8e-38 162.9 172 55.2
Eucgr.F03426 Eucalyptus grandis HOM05D007184 ORTHO05D008987 1.8e-37 160.2 118 74.6
EL10Ac1g02068 Beta vulgaris HOM05D007184 ORTHO05D008987 1.7e-35 153.7 100 76.0
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 1.2e-28 131.0 82 86.6
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 7.6e-28 128.3 82 85.4
Potri.001G417350 Populus trichocarpa HOM05D007184 ORTHO05D008987 5.5e-26 122.1 74 87.8
Nn1g08505 Nelumbo nucifera HOM05D007184 ORTHO05D008987 4.8e-22 109.0 88 65.9
SEGI_35792 Sequoiadendron giganteum HOM05D007184 ORTHO05D008987 6.3e-22 108.6 177 39.5
BcaB07g33555 Brassica carinata HOM05D007184 ORTHO05D008987 2.4e-21 106.7 153 49.0
Sc03g0008930 Simmondsia chinensis HOM05D007184 ORTHO05D008987 2.6e-20 103.2 103 61.2
Thhalv10012149m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 3.6e-17 92.8 79 64.6
Lju3590C0T1 Lonicera japonica HOM05D007184 ORTHO05D008987 5.1e-16 89.0 58 82.8
Pp3c11_19690 Physcomitrium patens HOM05D007184 ORTHO05D008987 1.2e-12 77.8 111 38.7
FvH4_7g08050 Fragaria vesca HOM05D007184 ORTHO05D008987 5.0e-11 72.4 46 82.6
FAN01G2498 Fragaria x ananassa HOM05D007184 ORTHO05D008987 5.0e-11 72.4 46 82.6
Mapoly0032s0044 Marchantia polymorpha HOM05D007184 ORTHO05D008987 1.8e-08 63.9 130 38.5
CBR_g19283 Chara braunii HOM05D007184 ORTHO05D008987 2.6e-07 60.1 98 36.7
AagrBONN_evm.TU.Sc2ySwM_117.1655 Anthoceros agrestis HOM05D007184 ORTHO05D008987 1.7e-06 57.4 89 39.3
FAN06G0875 Fragaria x ananassa HOM05D007184 ORTHO05D008987 1.7e-06 57.4 35 82.9


User provided reference genes

Program Settings