Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G130000 Populus trichocarpa HOM05D003841 ORTHO05D004602 2.3e-174 615.5 327 100.0
Sabra16G0281100 Salix brachista HOM05D003841 ORTHO05D004602 2.2e-124 449.5 334 77.2
Potri.001G410100 Populus trichocarpa HOM05D003841 ORTHO05D004602 1.8e-123 446.4 328 76.5
Sabra11G0117400 Salix brachista HOM05D003841 ORTHO05D004602 1.0e-97 360.9 273 76.9
Manes.15G079400 Manihot esculenta HOM05D003841 ORTHO05D004602 6.4e-76 288.5 330 52.1
QL08p014515 Quercus lobata HOM05D003841 ORTHO05D004602 3.7e-63 246.1 332 50.0
CSS0048456 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 6.5e-60 235.3 337 46.6
Ciclev10008955m.g Citrus clementina HOM05D003841 ORTHO05D004602 5.5e-59 232.3 331 48.3
Dinv02831 Davidia involucrata HOM05D003841 ORTHO05D004602 2.7e-58 229.9 342 46.2
Dinv22328 Davidia involucrata HOM05D003841 ORTHO05D004602 1.5e-56 224.2 339 45.4
Actinidia35303 Actinidia chinensis HOM05D003841 ORTHO05D004602 3.7e-55 219.5 356 44.7
TWI39G0875 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 2.4e-54 216.9 341 44.9
Duzib213G0276 Durio zibethinus HOM05D003841 ORTHO05D004602 1.4e-51 207.6 334 45.5
Thecc.07G059100 Theobroma cacao HOM05D003841 ORTHO05D004602 1.9e-51 207.2 338 44.1
Lj1A861T58 Lonicera japonica HOM05D003841 ORTHO05D004602 2.5e-51 206.8 337 43.9
Duzib170G0031 Durio zibethinus HOM05D003841 ORTHO05D004602 3.2e-51 206.5 342 43.6
CiPaw.12G124700 Carya illinoinensis HOM05D003841 ORTHO05D004602 7.2e-51 205.3 332 44.9
Cc05_g12980 Coffea canephora HOM05D003841 ORTHO05D004602 1.2e-50 204.5 342 43.6
Gohir.A11G281600 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.2e-50 204.5 341 44.3
COL.COLO4_09535 Corchorus olitorius HOM05D003841 ORTHO05D004602 2.1e-50 203.8 337 43.9
Cfa020471 Carpinus fangiana HOM05D003841 ORTHO05D004602 2.3e-49 200.3 330 45.2
Gorai.007G317200 Gossypium raimondii HOM05D003841 ORTHO05D004602 8.8e-49 198.4 341 42.8
Gohir.D11G294200 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.5e-48 196.8 341 42.5
TAR627G0073 Trochodendron aralioides HOM05D003841 ORTHO05D004602 2.5e-48 196.8 347 41.2
Nitab4.5_0000552g0100 Nicotiana tabacum HOM05D003841 ORTHO05D004602 5.7e-48 195.7 344 42.7
Lj8A163G39 Lonicera japonica HOM05D003841 ORTHO05D004602 1.7e-47 194.1 332 42.8
Haze_09572 Corylus avellana HOM05D003841 ORTHO05D004602 4.8e-47 192.6 355 41.4
Hund23360 Selenicereus undatus HOM05D003841 ORTHO05D004602 8.2e-47 191.8 327 38.2
TWI38G0390 Tripterygium wilfordii HOM05D003841 ORTHO05D004602 8.2e-47 191.8 356 41.9
TAR271G0005 Trochodendron aralioides HOM05D003841 ORTHO05D004602 8.2e-47 191.8 348 42.0
TAR271G0006 Trochodendron aralioides HOM05D003841 ORTHO05D004602 1.4e-46 191.0 354 40.7
AUR62041149 Chenopodium quinoa HOM05D003841 ORTHO05D004602 1.5e-45 187.6 325 40.3
RhsimUnG0254800 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.5e-45 187.6 341 40.2
Peaxi162Scf01365g00027 Petunia axillaris HOM05D003841 ORTHO05D004602 4.5e-45 186.0 346 41.3
EL10Ac4g08014 Beta vulgaris HOM05D003841 ORTHO05D004602 5.9e-45 185.7 326 42.0
MD11G1230100 Malus domestica HOM05D003841 ORTHO05D004602 7.7e-45 185.3 336 39.0
Nitab4.5_0003052g0050 Nicotiana tabacum HOM05D003841 ORTHO05D004602 1.0e-44 184.9 337 41.8
CSS0046033 Camellia sinensis var. sinensis HOM05D003841 ORTHO05D004602 1.3e-44 184.5 295 43.4
AUR62029272 Chenopodium quinoa HOM05D003841 ORTHO05D004602 1.7e-44 184.1 328 41.8
Gohir.A13G142900 Gossypium hirsutum HOM05D003841 ORTHO05D004602 2.2e-44 183.7 336 39.9
arahy.Tifrunner.gnm1.ann1.GYU1HX Arachis hypogaea HOM05D003841 ORTHO05D004602 2.9e-44 183.3 333 39.6
Eucgr.F03390 Eucalyptus grandis HOM05D003841 ORTHO05D004602 5.0e-44 182.6 340 42.9
Nn1g06911 Nelumbo nucifera HOM05D003841 ORTHO05D004602 1.1e-43 181.4 345 40.6
Gorai.013G165300 Gossypium raimondii HOM05D003841 ORTHO05D004602 4.2e-43 179.5 336 39.6
Gohir.D13G147500 Gossypium hirsutum HOM05D003841 ORTHO05D004602 5.5e-43 179.1 334 39.5
Lalb_Chr22g0357311 Lupinus albus HOM05D003841 ORTHO05D004602 1.2e-42 177.9 335 40.6
Rhsim06G0190700 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.2e-42 177.9 330 41.5
Rhsim06G0189000 Rhododendron simsii HOM05D003841 ORTHO05D004602 1.6e-42 177.6 330 41.5
arahy.Tifrunner.gnm1.ann1.SIF99T Arachis hypogaea HOM05D003841 ORTHO05D004602 2.1e-42 177.2 334 39.2
GSVIVG01014549001 Vitis vinifera HOM05D003841 ORTHO05D004602 4.7e-42 176.0 219 51.6
Oeu005438.1 Olea europaea HOM05D003841 ORTHO05D004602 6.1e-42 175.6 341 42.5
vmacro09595 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 6.1e-42 175.6 470 33.2
ClCG05G014990 Citrullus lanatus HOM05D003841 ORTHO05D004602 1.4e-41 174.5 337 39.8
FAN11G1553 Fragaria x ananassa HOM05D003841 ORTHO05D004602 2.0e-40 170.6 325 38.8
Lj3g0010893 Lotus japonicus HOM05D003841 ORTHO05D004602 2.6e-40 170.2 341 38.7
CANSAT11G1059 Cannabis sativa HOM05D003841 ORTHO05D004602 4.4e-40 169.5 331 39.0
FvH4_3g21510 Fragaria vesca HOM05D003841 ORTHO05D004602 9.7e-40 168.3 329 38.9
CsaV3_3G022650 Cucumis sativus L. HOM05D003841 ORTHO05D004602 1.3e-39 167.9 339 38.9
Ah.06g183230 Amaranthus hybridus HOM05D003841 ORTHO05D004602 2.8e-39 166.8 326 39.9
MELO3C018156.2 Cucumis melo HOM05D003841 ORTHO05D004602 2.8e-39 166.8 337 38.3
Lsat_1_v5_gn_7_107821 Lactuca sativa HOM05D003841 ORTHO05D004602 3.7e-39 166.4 326 39.3
Sed0013156 Sechium edule HOM05D003841 ORTHO05D004602 8.2e-39 165.2 334 38.9
Sopen07g032000 Solanum pennellii HOM05D003841 ORTHO05D004602 1.1e-38 164.9 349 38.7
vmacro11787 Vaccinium macrocarpon HOM05D003841 ORTHO05D004602 2.4e-38 163.7 361 38.0
FAN21G0547 Fragaria x ananassa HOM05D003841 ORTHO05D004602 3.1e-38 163.3 329 38.6
Oeu052335.1 Olea europaea HOM05D003841 ORTHO05D004602 4.1e-38 162.9 337 38.3
MD03G1215500 Malus domestica HOM05D003841 ORTHO05D004602 5.3e-38 162.5 331 38.4
Actinidia10692 Actinidia chinensis HOM05D003841 ORTHO05D004602 1.2e-37 161.4 291 41.6
HanXRQChr11g0332121 Helianthus annuus HOM05D003841 ORTHO05D004602 1.5e-37 161.0 341 38.1
Prupe.4G197300 Prunus persica HOM05D003841 ORTHO05D004602 1.5e-37 161.0 331 39.3
PGSC0003DMG400019273 Solanum tuberosum HOM05D003841 ORTHO05D000515 2.6e-37 160.2 324 39.8
Aa31LG3G10490 Aethionema arabicum HOM05D003841 ORTHO05D004602 3.5e-37 159.8 334 40.1
Solyc07g063870.3 Solanum lycopersicum HOM05D003841 ORTHO05D004602 4.5e-37 159.5 348 38.8
Migut.H01878 Erythranthe guttata HOM05D003841 ORTHO05D004602 7.7e-37 158.7 329 37.7
Lalb_Chr01g0006261 Lupinus albus HOM05D003841 ORTHO05D004602 7.7e-37 158.7 328 38.4
Psat7g160280 Pisum sativum HOM05D003841 ORTHO05D004602 1.0e-36 158.3 331 38.4
TPR.G34029 Trifolium pratense HOM05D003841 ORTHO05D004602 2.9e-36 156.8 333 37.8
FAN25G3758 Fragaria x ananassa HOM05D003841 ORTHO05D004602 8.5e-36 155.2 324 38.0
Glyma.06G262900 Glycine max HOM05D003841 ORTHO05D004602 8.5e-36 155.2 339 38.6
Ca_18832_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 1.1e-35 154.8 330 37.3
Ca_30091_v3 Cicer arietinum L. HOM05D003841 ORTHO05D004602 1.1e-35 154.8 330 37.3
THA.LOC104799894 Tarenaya hassleriana HOM05D003841 ORTHO05D004602 1.5e-35 154.5 333 39.3
Glyma.12G139800 Glycine max HOM05D003841 ORTHO05D004602 3.2e-35 153.3 345 37.1
VMungo1127G0850 Vigna mungo HOM05D003841 ORTHO05D004602 5.5e-35 152.5 333 37.2
FAN16G3040 Fragaria x ananassa HOM05D003841 ORTHO05D004602 9.4e-35 151.8 331 39.0
PSO541G4862 Papaver somniferum HOM05D003841 ORTHO05D004602 1.2e-34 151.4 347 35.2
Lj3g0010292 Lotus japonicus HOM05D003841 ORTHO05D004602 1.6e-34 151.0 328 36.6
Actinidia05162 Actinidia chinensis HOM05D003841 ORTHO05D004602 2.7e-34 150.2 367 37.1
SGA_v2.0_scaffold9G05000 Striga asiatica HOM05D003841 ORTHO05D004602 3.6e-34 149.8 326 39.9
MSTRG.6876 Avicennia marina HOM05D003841 ORTHO05D004602 6.1e-34 149.1 326 35.0
Carub.0008s1482 Capsella rubella HOM05D003841 ORTHO05D004602 8.0e-34 148.7 332 36.4
CARHR267820 Cardamine hirsuta HOM05D003841 ORTHO05D004602 8.0e-34 148.7 338 38.8
PSO675G5063 Papaver somniferum HOM05D003841 ORTHO05D004602 1.4e-33 147.9 346 35.0
AL8G29910 Arabidopsis lyrata HOM05D003841 ORTHO05D004602 3.0e-33 146.7 339 37.8
Medtr4g081550 Medicago truncatula HOM05D003841 ORTHO05D004602 3.0e-33 146.7 326 35.9
Phvul.011G146700 Phaseolus vulgaris HOM05D003841 ORTHO05D004602 5.2e-33 146.0 333 37.8
ECA236G3199 Erigeron canadensis HOM05D003841 ORTHO05D004602 3.3e-32 143.3 341 34.0
Hund02157 Selenicereus undatus HOM05D003841 ORTHO05D004602 9.7e-32 141.7 321 36.8
AT5G54540 Arabidopsis thaliana HOM05D003841 ORTHO05D004602 2.8e-31 140.2 341 37.2
Sc03g0009430 Simmondsia chinensis HOM05D003841 ORTHO05D004602 2.8e-31 140.2 326 35.3
TAR623G1765 Trochodendron aralioides HOM05D003841 ORTHO05D004602 6.3e-31 139.0 340 34.7
Sp6g16510 Schrenkiella parvula HOM05D003841 ORTHO05D004602 1.1e-30 138.3 338 37.3
DCAR_010006 Daucus carota HOM05D003841 ORTHO05D004602 1.4e-30 137.9 328 37.2
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 1.4e-30 137.9 100 74.0
DCAR_022502 Daucus carota HOM05D003841 ORTHO05D004602 5.3e-30 136.0 328 36.0
Thhalv10014255m.g Eutrema salsugineum HOM05D003841 ORTHO05D004602 5.9e-29 132.5 336 36.6
Migut.M01831 Erythranthe guttata HOM05D003841 ORTHO05D004602 1.0e-28 131.7 324 34.6
BraA10t43276Z Brassica rapa HOM05D003841 ORTHO05D004602 1.3e-28 131.3 336 36.9
SalBow7G4379 Salvia bowleyana HOM05D003841 ORTHO05D004602 1.3e-28 131.3 331 34.7
MSTRG.14400 Avicennia marina HOM05D003841 ORTHO05D004602 2.2e-28 130.6 285 39.3
SGA_v2.0_scaffold70G23570 Striga asiatica HOM05D003841 ORTHO05D004602 3.8e-28 129.8 324 34.3
A10p11770 Brassica napus HOM05D003841 ORTHO05D004602 6.5e-28 129.0 336 36.3
Glyma.13G284700 Glycine max HOM05D003841 ORTHO05D004602 1.5e-27 127.9 332 36.7
BcaB08g35813 Brassica carinata HOM05D003841 ORTHO05D004602 4.2e-27 126.3 334 35.9
A02p10210 Brassica napus HOM05D003841 ORTHO05D004602 4.2e-27 126.3 332 35.2
Glyma.12G216500 Glycine max HOM05D003841 ORTHO05D004602 7.2e-27 125.6 336 35.4
BcaC04g20329 Brassica carinata HOM05D003841 ORTHO05D004602 2.1e-26 124.0 336 35.4
Cpa.g.sc80.126 Carica papaya HOM05D003841 ORTHO05D004602 2.7e-26 123.6 187 49.7
arahy.Tifrunner.gnm1.ann1.SKE74K Arachis hypogaea HOM05D003841 ORTHO05D004602 4.7e-26 122.9 341 33.7
HPP92_004148 Vanilla planifolia HOM05D003841 ORTHO05D004602 1.4e-25 121.3 338 33.7
MBI18_g38396_MAGBIO Magnolia biondii HOM05D003841 ORTHO05D004602 2.3e-25 120.6 339 31.9
C09p44880 Brassica napus HOM05D003841 ORTHO05D004602 3.0e-25 120.2 336 35.4
Aqoxy1G03844 Aquilegia oxysepala HOM05D003841 ORTHO05D004602 5.2e-25 119.4 354 34.5
arahy.Tifrunner.gnm1.ann1.SRRR95 Arachis hypogaea HOM05D003841 ORTHO05D004602 5.2e-25 119.4 344 32.8
Zm00001eb413050 Zea mays HOM05D003841 ORTHO05D004602 6.8e-25 119.0 343 33.8
C02p16910 Brassica napus HOM05D003841 ORTHO05D004602 8.8e-25 118.6 336 35.7
BolC9t57359H Brassica oleracea HOM05D003841 ORTHO05D004602 3.4e-24 116.7 340 35.9
RcHm_v2.0_Chr5g0036951 Rosa chinensis HOM05D003841 ORTHO05D004602 5.7e-24 115.9 235 39.1
Zm00001eb171810 Zea mays HOM05D003841 ORTHO05D004602 9.8e-24 115.2 340 31.5
PSO675G0068 Papaver somniferum HOM05D003841 ORTHO05D004602 1.3e-23 114.8 332 32.8
BraA02t06092Z Brassica rapa HOM05D003841 ORTHO05D004602 1.4e-22 111.3 332 33.7
HPP92_005894 Vanilla planifolia HOM05D003841 ORTHO05D004602 5.4e-22 109.4 344 33.7
Gorai.007G317300 Gossypium raimondii HOM05D003841 ORTHO05D004602 3.5e-21 106.7 283 34.6
CDE05G3666 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 7.7e-21 105.5 333 30.0
Gohir.D11G294233 Gossypium hirsutum HOM05D003841 ORTHO05D004602 1.0e-20 105.1 283 34.3
Os08g0179900 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D004602 2.9e-20 103.6 279 31.2
CAN.G64.40 Capsicum annuum HOM05D003841 ORTHO05D004602 3.8e-20 103.2 139 47.5
Gohir.A11G281650 Gossypium hirsutum HOM05D003841 ORTHO05D004602 8.5e-20 102.1 278 33.8
DCAR_008683 Daucus carota HOM05D003841 ORTHO05D004602 1.5e-19 101.3 331 32.3
unitig_746.g26819 Utricularia gibba HOM05D003841 ORTHO05D004602 1.9e-19 100.9 302 33.4
Cfa021072 Carpinus fangiana HOM05D003841 ORTHO05D004602 1.2e-18 98.2 122 53.3
CAN.G1160.11 Capsicum annuum HOM05D003841 ORTHO05D004602 4.7e-18 96.3 224 33.9
ClCG10G006140 Citrullus lanatus HOM05D003841 ORTHO05D004602 1.0e-17 95.1 291 30.6
PSO384G0968 Papaver somniferum HOM05D003841 ORTHO05D004602 1.0e-17 95.1 352 30.7
PSO339G6399 Papaver somniferum HOM05D003841 ORTHO05D004602 2.3e-17 94.0 353 30.9
PSO541G5517 Papaver somniferum HOM05D003841 ORTHO05D004602 2.3e-17 94.0 240 33.3
ATR0804G047 Amborella trichopoda HOM05D003841 ORTHO05D004602 7.5e-16 89.0 349 30.4
Oeu052334.1 Olea europaea HOM05D003841 ORTHO05D004602 7.5e-16 89.0 247 30.0
unitig_899.g15555 Utricularia gibba HOM05D003841 ORTHO05D004602 7.5e-16 89.0 326 32.2
Sed0016497 Sechium edule HOM05D003841 ORTHO05D004602 9.8e-16 88.6 216 33.8
MELO3C016604.2 Cucumis melo HOM05D003841 ORTHO05D004602 1.3e-15 88.2 356 27.8
Oeu052339.1 Olea europaea HOM05D003841 ORTHO05D004602 1.7e-15 87.8 214 37.4
PGR031G0981 Punica granatum HOM05D003841 ORTHO05D004602 1.7e-15 87.8 153 39.9
Lsat_1_v5_gn_2_59361 Lactuca sativa HOM05D003841 ORTHO05D004602 8.3e-15 85.5 164 37.8
BcaB05g22143 Brassica carinata HOM05D003841 ORTHO05D004602 1.1e-14 85.1 324 30.2
Cpa.g.c47761 Carica papaya HOM05D003841 ORTHO05D004602 1.1e-14 85.1 121 53.7
CDE05G3612 Ceratophyllum demersum HOM05D003841 ORTHO05D004602 1.8e-14 84.3 334 29.0
Sed0013484 Sechium edule HOM05D003841 ORTHO05D004602 5.0e-12 76.3 312 28.5
CAN.G952.3 Capsicum annuum HOM05D003841 ORTHO05D004602 8.6e-12 75.5 199 36.2
CsaV3_3G005690 Cucumis sativus L. HOM05D003841 ORTHO05D004602 5.6e-11 72.8 352 26.7
CAN.G22.51 Capsicum annuum HOM05D000121 ORTHO05D000102 7.2e-11 72.4 119 43.7
SEGI_16254 Sequoiadendron giganteum HOM05D002766 ORTHO05D002809 1.2e-10 71.6 348 26.4
Oeu052338.1 Olea europaea HOM05D003841 ORTHO05D004602 2.1e-10 70.9 227 29.1
VMungo1027G0001 Vigna mungo HOM05D003841 ORTHO05D004602 1.4e-09 68.2 167 34.1
Mapoly0042s0124 Marchantia polymorpha HOM05D002766 ORTHO05D002809 2.0e-08 64.3 379 26.1
Ah.04g165190 Amaranthus hybridus HOM05D003841 ORTHO05D004602 9.8e-08 62.0 217 31.8
Ciclev10005283m.g Citrus clementina HOM05D002766 ORTHO05D002809 4.9e-07 59.7 258 29.1
Os03g0201000 Oryza sativa ssp. japonica HOM05D003841 ORTHO05D049799 1.1e-06 58.5 171 30.4
MBI04_g09526_MAGBIO Magnolia biondii HOM05D002766 ORTHO05D002809 4.1e-06 56.6 341 25.5
vmacro22809 Vaccinium macrocarpon HOM05D002766 ORTHO05D002809 4.1e-06 56.6 269 26.4


User provided reference genes

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