Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 5.6e-178 627.5 316 100.0
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 8.8e-163 577.0 314 92.4
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 1.1e-162 576.6 314 92.0
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 8.8e-139 497.3 318 80.5
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 6.3e-137 491.1 316 79.7
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 9.1e-136 487.3 293 82.9
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 2.9e-134 482.3 307 79.8
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 5.7e-130 468.0 296 81.1
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 5.7e-130 468.0 296 81.1
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 8.3e-129 464.2 296 80.7
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 1.1e-128 463.8 296 80.7
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 9.1e-128 460.7 296 80.7
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 2.7e-127 459.1 296 79.7
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 3.5e-127 458.8 296 79.7
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.7e-126 456.4 296 78.7
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 6.6e-126 454.5 296 78.0
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 8.6e-126 454.1 296 79.1
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 8.6e-126 454.1 296 79.4
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.6e-124 449.9 296 78.0
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 2.1e-124 449.5 295 76.9
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 6.1e-124 448.0 296 77.7
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 3.4e-122 442.2 296 75.7
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 1.3e-121 440.3 297 73.4
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 1.3e-121 440.3 296 75.7
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 2.2e-121 439.5 296 75.7
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 3.7e-121 438.7 297 74.7
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 4.9e-121 438.3 296 75.3
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 6.3e-121 438.0 296 75.3
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 8.3e-121 437.6 296 74.0
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 8.3e-121 437.6 301 73.8
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.4e-120 436.8 294 75.9
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 1.8e-120 436.4 293 75.8
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 3.2e-120 435.6 296 73.6
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 3.2e-120 435.6 294 75.5
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 5.4e-120 434.9 296 73.3
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 5.4e-120 434.9 294 75.5
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 5.4e-120 434.9 296 73.6
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 5.4e-120 434.9 296 74.0
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 5.4e-120 434.9 297 75.4
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 7.0e-120 434.5 296 74.7
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 7.0e-120 434.5 296 74.7
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 7.0e-120 434.5 296 74.7
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 1.2e-119 433.7 296 73.6
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 1.6e-119 433.3 294 75.2
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.6e-119 433.3 297 73.4
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 1.6e-119 433.3 298 73.8
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 1.6e-119 433.3 296 73.6
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 2.0e-119 433.0 297 73.1
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 2.0e-119 433.0 300 74.0
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 2.0e-119 433.0 300 74.0
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 2.7e-119 432.6 294 74.5
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 2.7e-119 432.6 296 73.3
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 3.5e-119 432.2 297 74.4
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 3.5e-119 432.2 293 75.1
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 3.5e-119 432.2 296 73.0
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 5.9e-119 431.4 296 73.3
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 5.9e-119 431.4 295 73.9
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 1.3e-118 430.3 297 74.4
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 1.3e-118 430.3 294 74.5
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 1.7e-118 429.9 298 73.2
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 1.7e-118 429.9 300 73.7
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 2.3e-118 429.5 294 74.1
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 2.3e-118 429.5 301 72.1
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 2.3e-118 429.5 301 72.1
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 3.9e-118 428.7 291 74.6
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 3.9e-118 428.7 294 74.5
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 3.9e-118 428.7 300 73.3
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 8.6e-118 427.6 299 73.2
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 1.1e-117 427.2 301 71.8
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.1e-117 427.2 300 74.0
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 1.5e-117 426.8 290 75.2
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 3.3e-117 425.6 308 71.4
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 7.3e-117 424.5 293 73.7
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 7.3e-117 424.5 296 72.6
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 1.2e-116 423.7 290 75.2
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.2e-116 423.7 293 73.7
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 1.6e-116 423.3 296 73.3
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 2.1e-116 422.9 295 73.2
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 2.8e-116 422.5 293 73.4
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 3.6e-116 422.2 288 75.3
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 3.6e-116 422.2 293 73.4
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 4.7e-116 421.8 293 72.7
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 1.4e-115 420.2 288 75.0
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 2.3e-115 419.5 288 74.7
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 4.0e-115 418.7 293 73.0
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 4.0e-115 418.7 301 70.4
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 6.8e-115 417.9 296 73.3
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 8.9e-115 417.5 287 73.2
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 3.4e-114 415.6 290 74.5
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 4.4e-114 415.2 294 71.1
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 5.8e-114 414.8 316 68.7
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 1.3e-113 413.7 291 71.1
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 1.1e-112 410.6 290 72.8
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 1.4e-112 410.2 291 71.1
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.9e-112 409.8 290 71.7
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 7.0e-112 407.9 290 70.0
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 7.0e-112 407.9 290 70.0
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 9.2e-112 407.5 291 70.8
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 9.2e-112 407.5 290 70.7
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 1.2e-111 407.1 302 71.5
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 1.6e-111 406.8 290 70.7
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 3.5e-111 405.6 291 70.8
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 1.0e-110 404.1 290 70.0
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 1.3e-110 403.7 284 71.5
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 1.3e-110 403.7 290 71.4
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 1.7e-110 403.3 279 74.6
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 3.0e-110 402.5 291 70.4
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 3.9e-110 402.1 298 70.1
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 6.6e-110 401.4 292 69.9
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 1.5e-109 400.2 295 69.8
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 7.3e-109 397.9 295 70.2
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 1.2e-108 397.1 290 71.0
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 1.2e-108 397.1 295 69.5
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 2.3e-107 392.9 290 70.7
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 3.1e-107 392.5 291 69.1
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 3.1e-107 392.5 297 69.4
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.2e-106 390.6 293 69.3
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 2.0e-106 389.8 303 70.0
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 1.7e-105 386.7 297 68.4
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 1.7e-105 386.7 298 68.8
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 2.2e-105 386.3 279 70.3
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 2.9e-105 386.0 291 67.7
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 4.6e-103 378.6 296 66.6
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 1.7e-102 376.7 297 67.7
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 3.9e-102 375.6 296 66.2
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 2.5e-101 372.9 285 68.8
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 2.3e-99 366.3 302 63.6
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 3.1e-99 365.9 295 63.7
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 1.2e-98 364.0 296 63.5
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 2.6e-98 362.8 295 66.8
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 4.4e-98 362.1 293 66.2
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 1.3e-97 360.5 321 58.9
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 1.9e-96 356.7 295 64.1
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 5.4e-96 355.1 296 64.2
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 1.6e-95 353.6 296 63.9
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 4.6e-95 352.1 307 63.2
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 6.0e-95 351.7 290 64.1
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 6.0e-95 351.7 301 63.1
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 7.8e-95 351.3 305 61.0
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 1.0e-94 350.9 291 64.9
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 1.3e-94 350.5 301 61.8
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 7.3e-93 344.7 295 62.0
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 2.1e-87 326.6 246 68.7
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 2.6e-82 309.7 289 59.2
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 6.4e-81 305.1 287 57.5
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 2.4e-80 303.1 218 71.6
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 2.5e-77 293.1 287 55.4
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 3.3e-77 292.7 288 56.2
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 2.1e-68 263.5 197 71.1
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 9.3e-64 248.1 143 86.0
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 7.4e-61 238.4 270 53.0
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 3.4e-58 229.6 282 45.4
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 5.0e-57 225.7 278 47.5
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 7.7e-50 201.8 126 75.4
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 2.2e-49 200.3 152 67.1
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 1.2e-47 194.5 166 63.9
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 2.1e-39 167.2 145 62.1
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 4.1e-27 126.3 339 30.7
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 7.0e-27 125.6 113 59.3
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 6.1e-23 112.5 114 53.5
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 5.2e-22 109.4 89 65.2
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 4.4e-21 106.3 112 52.7
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 3.5e-18 96.7 73 64.4
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 1.3e-17 94.7 98 54.1
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 5.0e-09 66.2 93 46.2
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 2.8e-07 60.5 72 44.4
CDE02G4569 Ceratophyllum demersum HOM05D005748 ORTHO05D007123 1.4e-06 58.2 157 32.5
PGSC0003DMG400020380 Solanum tuberosum HOM05D005748 ORTHO05D007123 1.4e-06 58.2 152 35.5
Manes.13G027200 Manihot esculenta HOM05D005748 ORTHO05D007123 8.9e-06 55.5 186 29.6
TWI18G0424 Tripterygium wilfordii HOM05D005748 ORTHO05D007123 8.9e-06 55.5 152 32.2


User provided reference genes

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