Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G126600 Populus trichocarpa HOM05D007962 ORTHO05D009990 7.4e-226 786.9 418 100.0
Sabra11G0110900 Salix brachista HOM05D007962 ORTHO05D009990 9.7e-194 680.2 418 87.1
Potri.001G407200 Populus trichocarpa HOM05D007962 ORTHO05D009990 2.6e-170 602.4 415 79.3
Manes.15G083000 Manihot esculenta HOM05D007962 ORTHO05D009990 2.8e-92 343.2 418 52.2
Sabra16G0268600 Salix brachista HOM05D007962 ORTHO05D009990 3.0e-86 323.2 417 51.1
GSVIVG01014440001 Vitis vinifera HOM05D007962 ORTHO05D009990 3.0e-86 323.2 421 50.1
QL08p017718 Quercus lobata HOM05D007962 ORTHO05D009990 9.1e-83 311.6 441 47.6
Thecc.07G070800 Theobroma cacao HOM05D007962 ORTHO05D009990 2.9e-81 306.6 426 48.4
COL.COLO4_09484 Corchorus olitorius HOM05D007962 ORTHO05D009990 6.5e-81 305.4 405 49.6
Gorai.013G165900 Gossypium raimondii HOM05D007962 ORTHO05D009990 8.5e-81 305.1 439 47.8
Dinv22362 Davidia involucrata HOM05D007962 ORTHO05D009990 1.9e-80 303.9 423 45.9
Gohir.A13G143400 Gossypium hirsutum HOM05D007962 ORTHO05D009990 1.9e-80 303.9 405 49.6
Duzib213G0567 Durio zibethinus HOM05D007962 ORTHO05D009990 8.8e-78 295.0 455 45.5
MD03G1218200 Malus domestica HOM05D007962 ORTHO05D009990 2.6e-77 293.5 428 46.7
RcHm_v2.0_Chr5g0036061 Rosa chinensis HOM05D007962 ORTHO05D009990 4.5e-74 282.7 388 47.9
Cfa020503 Carpinus fangiana HOM05D007962 ORTHO05D009990 1.3e-73 281.2 412 46.1
FAN25G2958 Fragaria x ananassa HOM05D007962 ORTHO05D009990 2.5e-72 276.9 384 48.4
FAN16G1594 Fragaria x ananassa HOM05D007962 ORTHO05D009990 7.2e-72 275.4 384 48.4
Haze_09532 Corylus avellana HOM05D007962 ORTHO05D009990 2.7e-71 273.5 425 45.2
Duzib170G0916 Durio zibethinus HOM05D007962 ORTHO05D009990 8.0e-71 271.9 425 45.4
Gohir.D13G148100 Gossypium hirsutum HOM05D007962 ORTHO05D009990 1.0e-70 271.6 350 51.1
FAN11G3981 Fragaria x ananassa HOM05D007962 ORTHO05D009990 3.0e-70 270.0 385 48.1
TAR627G0526 Trochodendron aralioides HOM05D007962 ORTHO05D009990 3.3e-69 266.5 419 43.7
TWI39G0726 Tripterygium wilfordii HOM05D007962 ORTHO05D009990 8.2e-68 261.9 419 42.5
FAN21G0493 Fragaria x ananassa HOM05D007962 ORTHO05D009990 2.0e-66 257.3 384 47.1
Atru.chr2.2909 Acer truncatum HOM05D007962 ORTHO05D009990 2.9e-65 253.4 444 43.9
Dinv08346 Davidia involucrata HOM05D007962 ORTHO05D009990 7.2e-64 248.8 364 45.1
Cpa.g.sc80.118 Carica papaya HOM05D007962 ORTHO05D009990 1.8e-62 244.2 427 40.0
Lj1A853T83 Lonicera japonica HOM05D007962 ORTHO05D009990 4.0e-62 243.0 424 42.2
PGR031G2376 Punica granatum HOM05D007962 ORTHO05D009990 1.5e-61 241.1 393 42.7
CiPaw.11G176900 Carya illinoinensis HOM05D007962 ORTHO05D009990 9.8e-61 238.4 412 42.7
vmacro09563 Vaccinium macrocarpon HOM05D007962 ORTHO05D009990 3.7e-60 236.5 420 39.8
Actinidia18741 Actinidia chinensis HOM05D007962 ORTHO05D009990 1.7e-57 227.6 437 40.0
CSS0037131 Camellia sinensis var. sinensis HOM05D007962 ORTHO05D009990 3.3e-56 223.4 391 43.7
Ciclev10010584m.g Citrus clementina HOM05D007962 ORTHO05D009990 5.5e-56 222.6 427 43.8
CANSAT11G1510 Cannabis sativa HOM05D007962 ORTHO05D009990 7.2e-56 222.2 412 41.5
RhsimUnG0258400 Rhododendron simsii HOM05D007962 ORTHO05D009990 1.6e-55 221.1 420 39.3
Oeu006765.1 Olea europaea HOM05D007962 ORTHO05D009990 1.8e-54 217.6 408 40.0
Actinidia35282 Actinidia chinensis HOM05D007962 ORTHO05D009990 1.5e-53 214.5 414 38.9
Eucgr.F03357 Eucalyptus grandis HOM05D007962 ORTHO05D009990 8.3e-52 208.8 418 39.5
Nn1g06763 Nelumbo nucifera HOM05D007962 ORTHO05D009990 3.3e-48 196.8 412 37.9
Nitab4.5_0001320g0060 Nicotiana tabacum HOM05D007962 ORTHO05D009990 5.2e-46 189.5 402 36.1
MD11G1236000 Malus domestica HOM05D007962 ORTHO05D009990 1.8e-43 181.0 364 41.2
Nitab4.5_0000207g0280 Nicotiana tabacum HOM05D007962 ORTHO05D009990 1.8e-38 164.5 394 35.3
arahy.Tifrunner.gnm1.ann1.680K8M Arachis hypogaea HOM05D007962 ORTHO05D009990 1.4e-35 154.8 445 32.1
EL10Ac4g08053 Beta vulgaris HOM05D007962 ORTHO05D009990 1.6e-34 151.4 446 30.0
MBI02_g06003_MAGBIO Magnolia biondii HOM05D007962 ORTHO05D009990 1.3e-33 148.3 451 32.2
arahy.Tifrunner.gnm1.ann1.NS3ZH3 Arachis hypogaea HOM05D007962 ORTHO05D009990 1.5e-32 144.8 443 30.2
AUR62015596 Chenopodium quinoa HOM05D007962 ORTHO05D009990 1.5e-32 144.8 457 33.5
CsaV3_3G005940 Cucumis sativus L. HOM05D007962 ORTHO05D009990 1.5e-32 144.8 399 32.3
Aqoxy1G03880 Aquilegia oxysepala HOM05D007962 ORTHO05D009990 1.9e-32 144.4 486 29.8
ClCG10G006460 Citrullus lanatus HOM05D007962 ORTHO05D009990 1.9e-32 144.4 398 33.7
MELO3C016557.2 Cucumis melo HOM05D007962 ORTHO05D009990 2.5e-32 144.1 402 36.1
Phvul.011G137100 Phaseolus vulgaris HOM05D007962 ORTHO05D009990 3.3e-32 143.7 447 30.4
Lj3g0007855 Lotus japonicus HOM05D007962 ORTHO05D009990 1.2e-31 141.7 425 31.8
Lalb_Chr19g0134511 Lupinus albus HOM05D007962 ORTHO05D009990 3.6e-31 140.2 389 32.9
VMungo1127G0274 Vigna mungo HOM05D007962 ORTHO05D009990 3.6e-31 140.2 420 32.1
FvH4_3g21030 Fragaria vesca HOM05D007962 ORTHO05D009990 3.1e-30 137.1 262 44.3
Glyma.06G271400 Glycine max HOM05D007962 ORTHO05D009990 4.0e-30 136.7 543 29.1
PSO832G2030 Papaver somniferum HOM05D007962 ORTHO05D009990 1.2e-29 135.2 403 33.0
PSO210G4006 Papaver somniferum HOM05D007962 ORTHO05D009990 1.5e-29 134.8 403 32.3
AUR62029307 Chenopodium quinoa HOM05D007962 ORTHO05D009990 2.0e-29 134.4 474 31.2
Ah.06g183570 Amaranthus hybridus HOM05D007962 ORTHO05D009990 1.7e-28 131.3 274 36.1
Sopen10g002730 Solanum pennellii HOM05D007962 ORTHO05D009990 4.9e-28 129.8 304 36.2
Sc16g0006740 Simmondsia chinensis HOM05D007962 ORTHO05D009990 1.2e-26 125.2 284 34.9
Hma1.2p1_1176F.1_g264250 Hydrangea macrophylla HOM05D007962 ORTHO05D009990 2.7e-26 124.0 302 37.4
Hma1.2p1_1176F.1_g264255 Hydrangea macrophylla HOM05D007962 ORTHO05D009990 2.7e-26 124.0 302 37.4
TPR.G34588 Trifolium pratense HOM05D007962 ORTHO05D009990 3.5e-26 123.6 419 29.8
Migut.M01857 Erythranthe guttata HOM05D007962 ORTHO05D009990 2.3e-25 120.9 416 30.3
Psat4g163880 Pisum sativum HOM05D007962 ORTHO05D009990 3.0e-25 120.6 428 29.2
MSTRG.15202 Avicennia marina HOM05D007962 ORTHO05D009990 2.4e-22 110.9 391 29.7
HanXRQChr03g0077201 Helianthus annuus HOM05D007962 ORTHO05D009990 6.8e-22 109.4 392 30.1
Medtr8g464490 Medicago truncatula HOM05D007962 ORTHO05D009990 2.9e-20 104.0 433 27.7
Sed0012704 Sechium edule HOM05D007962 ORTHO05D009990 1.2e-15 88.6 367 32.4
CDE11G0480 Ceratophyllum demersum HOM05D063389 ORTHO05D009990 1.6e-15 88.2 401 28.9
ECA240G4716 Erigeron canadensis HOM05D000200 ORTHO05D001546 2.0e-13 81.3 331 30.5
HanXRQChr13g0393921 Helianthus annuus HOM05D003190 ORTHO05D009990 3.8e-12 77.0 116 39.7
Lsat_1_v5_gn_9_95621 Lactuca sativa HOM05D007962 ORTHO05D009990 3.2e-11 73.9 379 28.2
SEGI_13433 Sequoiadendron giganteum HOM05D007962 ORTHO05D009990 1.1e-08 65.5 123 38.2
AagrBONN_evm.TU.Sc2ySwM_228.932 Anthoceros agrestis HOM05D020562 ORTHO05D009990 4.8e-07 60.1 47 55.3


User provided reference genes

Program Settings