Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 2541.1 1259 100.0
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 2437.1 1302 94.0
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 2172.1 1260 85.2
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 2092.0 1258 81.3
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 2089.7 1258 81.2
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 2088.5 1258 80.8
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 2085.8 1258 80.8
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 2078.9 1258 80.6
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 2077.8 1265 80.2
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 2075.1 1258 80.0
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 2072.0 1258 80.8
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 2067.0 1261 80.4
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 2060.4 1259 80.5
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 2059.6 1258 80.3
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 2058.9 1264 79.4
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2056.2 1258 79.9
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 2054.3 1274 79.4
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 2050.4 1259 80.0
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2045.0 1258 79.6
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 2043.9 1258 79.4
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2041.2 1258 79.3
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 2040.0 1258 79.4
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 2039.6 1258 79.3
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 2031.1 1258 78.7
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 2029.6 1257 78.8
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 2019.2 1258 78.0
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 2017.7 1258 78.0
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 2006.9 1253 78.9
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 2005.3 1260 78.2
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1997.2 1258 78.8
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 1997.2 1259 77.5
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1993.4 1259 78.4
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 1993.0 1259 77.5
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1990.7 1258 77.3
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 1987.6 1258 78.1
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1986.5 1258 77.9
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 1978.8 1258 77.7
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1977.2 1281 76.3
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1976.8 1517 67.5
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1973.0 1258 77.3
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1971.8 1258 77.1
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1968.7 1261 76.8
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1965.7 1259 77.2
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 1963.0 1258 75.9
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1961.0 1259 76.3
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1960.3 1259 76.4
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1959.9 1262 76.1
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 1957.6 1274 76.4
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1956.8 1259 76.4
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1956.4 1248 78.0
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1956.4 1262 75.9
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1954.5 1261 76.0
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1954.5 1258 76.5
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1952.2 1284 75.6
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1944.9 1287 74.7
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1944.5 1258 75.7
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 1941.8 1258 75.5
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1940.6 1260 75.5
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1939.9 1260 75.6
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1937.9 1260 75.6
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1937.2 1261 75.6
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1936.0 1258 77.1
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1934.5 1266 75.3
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1934.5 1262 75.8
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 1934.1 1243 76.7
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1933.7 1261 75.6
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1933.7 1327 72.9
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1929.8 1259 75.3
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1927.9 1258 74.8
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1925.6 1262 75.5
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1920.2 1263 75.2
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1919.8 1260 75.2
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1919.1 1257 75.4
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1918.7 1260 75.1
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1916.4 1259 74.7
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1916.0 1264 74.5
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1914.8 1267 74.5
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1911.7 1260 74.7
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1906.3 1258 75.1
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1904.8 1260 74.6
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1904.4 1268 73.9
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1900.6 1260 74.8
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1899.8 1261 74.1
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1885.9 1261 73.7
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1885.5 1271 75.2
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1860.9 1245 73.9
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1840.5 1171 77.2
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 1840.1 1162 78.1
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1817.7 1324 69.0
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1798.9 1240 72.2
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1777.3 1256 70.2
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1770.7 1260 68.7
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1691.0 1033 80.8
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1664.4 1074 75.4
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1656.0 1096 74.3
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1632.1 1232 66.4
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1630.9 1008 80.1
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1601.3 1048 76.6
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1598.9 1263 63.3
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1561.2 1060 72.9
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1560.4 1031 75.0
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1495.3 1093 70.4
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1489.2 924 80.1
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1465.3 1014 71.9
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1399.8 856 79.8
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1314.7 1391 50.3
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1219.9 1358 49.1
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 0.0e+00 1207.6 1261 53.6
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 0.0e+00 1181.8 776 74.7
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 0.0e+00 1138.3 747 74.2
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 0.0e+00 1124.4 865 65.7
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 0.0e+00 1083.2 1012 57.6
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 3.7e-297 1025.4 1155 47.4
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 1.8e-275 953.4 592 80.2
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 3.0e-254 882.9 850 56.8
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.1e-248 864.4 536 78.2
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 8.2e-212 741.9 446 81.2
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 6.1e-207 725.7 1437 33.6
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 2.5e-200 703.7 452 76.3
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.7e-164 584.7 489 60.5
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 1.7e-153 548.1 306 84.6
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 3.1e-118 431.0 316 66.8
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 2.9e-100 371.3 205 84.4
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 6.9e-94 350.1 323 62.2
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 2.6e-93 348.2 372 48.1
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 3.6e-90 337.8 194 78.9
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 7.4e-88 330.1 256 61.7
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 4.7e-82 310.8 212 72.6
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 4.4e-80 304.3 179 79.9
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 3.7e-79 301.2 216 70.4
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 3.6e-74 284.6 159 84.9
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 1.0e-73 283.1 258 58.1
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 1.0e-73 283.1 258 58.1
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 1.0e-73 283.1 258 58.1
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 1.2e-72 279.6 152 87.5
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.3e-72 278.1 262 53.4
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 1.8e-70 272.3 180 72.2
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.3e-68 266.2 454 36.3
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 1.4e-65 256.1 199 65.8
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 4.4e-64 251.1 163 76.7
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 1.2e-61 243.0 150 76.0
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 5.9e-53 214.2 132 76.5
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 8.9e-49 200.3 151 66.2
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 8.3e-47 193.7 136 63.2
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 1.6e-45 189.5 211 50.7
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 1.9e-43 182.6 130 70.0
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 4.3e-43 181.4 107 74.8
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 3.6e-42 178.3 121 72.7
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 3.6e-42 178.3 107 74.8
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.5e-40 172.9 107 72.9
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.5e-40 172.9 107 72.9
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.6e-40 172.2 98 79.6
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 2.2e-39 169.1 106 72.6
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 7.0e-38 164.1 111 70.3
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 6.0e-37 161.0 98 83.7
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 1.3e-36 159.8 102 74.5
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 5.2e-33 147.9 81 79.0
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 3.2e-30 138.7 124 57.3
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 6.0e-29 134.4 87 73.6
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.7e-28 132.9 78 74.4
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 9.5e-27 127.1 65 84.6
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 1.2e-21 110.2 107 46.7
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 1.6e-21 109.8 705 22.1
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 1.0e-20 107.1 111 55.0
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 7.3e-19 100.9 62 75.8
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 3.1e-17 95.5 81 60.5
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 6.9e-17 94.4 70 61.4
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 1.2e-16 93.6 57 75.4
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 9.9e-16 90.5 52 76.9
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 5.4e-14 84.7 99 48.5
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 3.5e-13 82.0 50 78.0
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 2.1e-10 72.8 383 21.1
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 8.1e-10 70.9 69 49.3
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 9.9e-08 63.9 52 63.5
SEGI_32398 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 5.4e-06 58.2 66 43.9


User provided reference genes

Program Settings