Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G123600 Populus trichocarpa HOM05D007708 ORTHO05D009506 2.5e-56 221.9 110 100.0
Potri.001G404500 Populus trichocarpa HOM05D007708 ORTHO05D009506 2.3e-46 188.7 110 85.5
Manes.03G114400 Manihot esculenta HOM05D007708 ORTHO05D009506 1.2e-26 123.2 115 60.9
Duzib268G1443 Durio zibethinus HOM05D007708 ORTHO05D009506 2.7e-26 122.1 101 59.4
QL08p019254 Quercus lobata HOM05D007708 ORTHO05D009506 2.7e-26 122.1 111 58.6
Glyma.12G221200 Glycine max HOM05D007708 ORTHO05D009506 6.6e-25 117.5 115 53.9
Haze_09495 Corylus avellana HOM05D007708 ORTHO05D009506 8.6e-25 117.1 117 55.6
CiPaw.11G174300 Carya illinoinensis HOM05D007708 ORTHO05D009506 7.3e-24 114.0 105 54.3
Ciclev10009880m.g Citrus clementina HOM05D007708 ORTHO05D009506 9.5e-24 113.6 120 53.3
TPR.G38977 Trifolium pratense HOM05D007708 ORTHO05D009506 1.2e-23 113.2 109 52.3
Ca_01817_v3 Cicer arietinum L. HOM05D007708 ORTHO05D009506 2.8e-23 112.1 109 53.2
Phvul.005G084800 Phaseolus vulgaris HOM05D007708 ORTHO05D009506 3.6e-23 111.7 115 52.2
Gorai.002G073900 Gossypium raimondii HOM05D007708 ORTHO05D009506 6.2e-23 110.9 106 57.5
Glyma.13G280400 Glycine max HOM05D007708 ORTHO05D009506 8.1e-23 110.5 90 60.0
Gohir.A01G066900 Gossypium hirsutum HOM05D007708 ORTHO05D009506 1.1e-22 110.2 106 55.7
Psat5g246000 Pisum sativum HOM05D007708 ORTHO05D009506 1.1e-22 110.2 102 55.9
Gohir.D01G054100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 1.8e-22 109.4 106 55.7
Lj3g0000986 Lotus japonicus HOM05D007708 ORTHO05D009506 1.8e-22 109.4 90 60.0
Thecc.07G075600 Theobroma cacao HOM05D007708 ORTHO05D009506 1.2e-21 106.7 65 76.9
VMungo1080G0096 Vigna mungo HOM05D007708 ORTHO05D009506 1.2e-21 106.7 115 50.4
Prupe.4G187200 Prunus persica HOM05D007708 ORTHO05D009506 1.5e-21 106.3 103 58.3
Lalb_Chr07g0181711 Lupinus albus HOM05D007708 ORTHO05D009506 2.0e-21 105.9 74 68.9
Medtr2g080030 Medicago truncatula HOM05D007708 ORTHO05D009506 3.4e-21 105.1 104 52.9
Cfa020536 Carpinus fangiana HOM05D007708 ORTHO05D009506 4.4e-21 104.8 118 53.4
Eucgr.F03340 Eucalyptus grandis HOM05D007708 ORTHO05D009506 4.4e-21 104.8 101 53.5
Gohir.A04G028100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 2.9e-20 102.1 111 53.2
RcHm_v2.0_Chr5g0034861 Rosa chinensis HOM05D007708 ORTHO05D009506 4.9e-20 101.3 113 52.2
FvH4_3g20710 Fragaria vesca HOM05D007708 ORTHO05D009506 6.4e-20 100.9 113 52.2
FAN11G2360 Fragaria x ananassa HOM05D007708 ORTHO05D009506 6.4e-20 100.9 113 52.2
Gohir.D05G360000 Gossypium hirsutum HOM05D007708 ORTHO05D009506 6.4e-20 100.9 111 53.2
Gorai.009G432700 Gossypium raimondii HOM05D007708 ORTHO05D009506 6.4e-20 100.9 111 53.2
MD03G1222500 Malus domestica HOM05D007708 ORTHO05D009506 1.4e-19 99.8 79 68.4
FAN16G0929 Fragaria x ananassa HOM05D007708 ORTHO05D009506 1.9e-19 99.4 117 51.3
FAN21G3926 Fragaria x ananassa HOM05D007708 ORTHO05D009506 1.9e-19 99.4 117 50.4
FAN25G1391 Fragaria x ananassa HOM05D007708 ORTHO05D009506 1.9e-19 99.4 117 50.4
THA.LOC104818058 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 1.9e-19 99.4 113 48.7
Aa31LG10G2210 Aethionema arabicum HOM05D007708 ORTHO05D009506 2.4e-19 99.0 74 64.9
THA.LOC104810490 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 5.4e-19 97.8 95 54.7
MD11G1239800 Malus domestica HOM05D007708 ORTHO05D009506 7.1e-19 97.4 95 60.0
BcaB06g29586 Brassica carinata HOM05D007708 ORTHO05D009506 9.2e-19 97.1 87 57.5
CARHR090570 Cardamine hirsuta HOM05D007708 ORTHO05D009506 1.2e-18 96.7 97 53.6
Aa31LG8G2750 Aethionema arabicum HOM05D007708 ORTHO05D009506 1.6e-18 96.3 106 47.2
A05p33900 Brassica napus HOM05D007708 ORTHO05D009506 4.6e-18 94.7 87 56.3
BraA05t22212Z Brassica rapa HOM05D007708 ORTHO05D009506 4.6e-18 94.7 87 56.3
Sp3g13770 Schrenkiella parvula HOM05D007708 ORTHO05D009506 4.6e-18 94.7 87 56.3
BcaC05g28966 Brassica carinata HOM05D007708 ORTHO05D009506 6.0e-18 94.4 87 56.3
C05p51610 Brassica napus HOM05D007708 ORTHO05D009506 6.0e-18 94.4 87 56.3
BolC5t33849H Brassica oleracea HOM05D007708 ORTHO05D009506 6.0e-18 94.4 87 56.3
Carub.0003s1524 Capsella rubella HOM05D007708 ORTHO05D009506 6.0e-18 94.4 87 52.9
AL3G28090 Arabidopsis lyrata HOM05D007708 ORTHO05D009506 7.8e-18 94.0 97 49.5
BcaB04g20921 Brassica carinata HOM05D007708 ORTHO05D009506 1.0e-17 93.6 95 51.6
AT3G15518 Arabidopsis thaliana HOM05D007708 ORTHO05D009506 1.3e-17 93.2 97 48.5
Thhalv10021811m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 1.3e-17 93.2 87 56.3
Atru.chr2.2769 Acer truncatum HOM05D007708 ORTHO05D009506 1.7e-17 92.8 101 52.5
Thhalv10012270m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 2.3e-17 92.4 106 50.9
BcaC09g48516 Brassica carinata HOM05D007708 ORTHO05D009506 3.9e-17 91.7 102 46.1
BcaC09g48517 Brassica carinata HOM05D007708 ORTHO05D009506 3.9e-17 91.7 102 46.1
BolC1t04856H Brassica oleracea HOM05D007708 ORTHO05D009506 3.9e-17 91.7 87 52.9
TWI38G1724 Tripterygium wilfordii HOM05D007708 ORTHO05D009506 1.9e-16 89.4 110 47.3
BcaB07g33383 Brassica carinata HOM05D007708 ORTHO05D009506 2.5e-16 89.0 106 52.8
Sp1g39450 Schrenkiella parvula HOM05D000067 ORTHO05D000097 1.2e-15 86.7 83 53.0
A06p01470 Brassica napus HOM05D007708 ORTHO05D009506 2.8e-15 85.5 103 51.5
BraA06t23368Z Brassica rapa HOM05D007708 ORTHO05D009506 2.8e-15 85.5 103 51.5
BcaC08g43472 Brassica carinata HOM05D007708 ORTHO05D009506 3.6e-15 85.1 104 51.9
C06p08550 Brassica napus HOM05D007708 ORTHO05D009506 3.6e-15 85.1 104 51.9
BolC6t35934H Brassica oleracea HOM05D007708 ORTHO05D009506 3.6e-15 85.1 104 51.9
Nn1g06676 Nelumbo nucifera HOM05D007708 ORTHO05D009506 3.6e-15 85.1 100 49.0
ClCG11G018300 Citrullus lanatus HOM05D007708 ORTHO05D009506 6.2e-15 84.3 69 63.8
MELO3C018234.2 Cucumis melo HOM05D007708 ORTHO05D009506 3.4e-13 78.6 69 59.4
CsaV3_3G044520 Cucumis sativus L. HOM05D007708 ORTHO05D009506 5.8e-13 77.8 96 49.0
Glyma.06G249202 Glycine max HOM05D007708 ORTHO05D009506 2.9e-12 75.5 112 43.8
Aqoxy1G02627 Aquilegia oxysepala HOM05D007708 ORTHO05D009506 3.8e-12 75.1 88 54.5
BcaC09g48515 Brassica carinata HOM05D007708 ORTHO05D009506 3.8e-12 75.1 102 40.2
COL.COLO4_09450 Corchorus olitorius HOM05D007708 ORTHO05D009506 3.8e-12 75.1 48 70.8
TAR626G1828 Trochodendron aralioides HOM05D007708 ORTHO05D009506 4.9e-12 74.7 105 45.7
Sed0014711 Sechium edule HOM05D007708 ORTHO05D009506 8.4e-12 73.9 68 61.8
MBI02_g19253_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 1.1e-11 73.6 80 55.0
Sc16g0006840 Simmondsia chinensis HOM05D007708 ORTHO05D009506 2.4e-11 72.4 55 70.9
CSS0032536 Camellia sinensis var. sinensis HOM05D007708 ORTHO05D009506 1.2e-10 70.1 119 42.9
Sed0019748 Sechium edule HOM05D007708 ORTHO05D009506 3.5e-10 68.6 83 50.6
Lsat_1_v5_gn_5_7381 Lactuca sativa HOM05D007708 ORTHO05D009506 2.3e-09 65.9 43 72.1
Rhsim06G0195000 Rhododendron simsii HOM05D007708 ORTHO05D009506 2.3e-09 65.9 50 64.0
DCAR_013081 Daucus carota HOM05D007708 ORTHO05D009506 3.0e-09 65.5 112 42.9
Cc05_g12520 Coffea canephora HOM05D007708 ORTHO05D009506 6.6e-09 64.3 40 77.5
AUR62015628 Chenopodium quinoa HOM05D023068 ORTHO05D009506 8.7e-09 63.9 50 62.0
AUR62029333 Chenopodium quinoa HOM05D023068 ORTHO05D009506 2.5e-08 62.4 46 65.2
Nitab4.5_0000662g0060 Nicotiana tabacum HOM05D007708 ORTHO05D009506 4.3e-08 61.6 77 45.5
MBI02_g19254_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 1.6e-07 59.7 87 42.5
PGSC0003DMG400040761 Solanum tuberosum HOM05D007708 ORTHO05D009506 2.8e-07 58.9 38 71.1
Ah.04g165060 Amaranthus hybridus HOM05D023068 ORTHO05D009506 4.8e-07 58.2 49 67.3
Lsat_1_v5_gn_7_105741 Lactuca sativa HOM05D007708 ORTHO05D009506 1.1e-06 57.0 41 65.9
Nitab4.5_0001610g0030 Nicotiana tabacum HOM05D007708 ORTHO05D009506 1.4e-06 56.6 84 42.9
Ah.06g183770 Amaranthus hybridus HOM05D023068 ORTHO05D009506 1.8e-06 56.2 45 62.2
Migut.M00865 Erythranthe guttata HOM05D023068 ORTHO05D009506 1.8e-06 56.2 98 41.8
Nn3g17047 Nelumbo nucifera HOM05D007708 ORTHO05D009506 1.8e-06 56.2 78 42.3
Lalb_Chr19g0134351 Lupinus albus HOM05D007708 ORTHO05D009506 4.0e-06 55.1 54 55.6
Oeu052012.1 Olea europaea HOM05D037150 ORTHO05D009506 6.9e-06 54.3 107 39.3


User provided reference genes

Program Settings