Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 1.1e-90 337.4 309 100.0
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 7.2e-85 318.2 173 94.8
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 2.1e-84 316.6 172 93.6
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 4.3e-82 308.9 172 90.1
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 1.7e-81 307.0 172 89.5
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 1.7e-81 307.0 172 90.1
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 1.1e-80 304.3 172 89.5
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 2.4e-80 303.1 172 90.7
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 6.9e-80 301.6 172 87.2
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 9.1e-80 301.2 172 87.2
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 1.2e-79 300.8 172 86.6
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 1.5e-79 300.4 172 89.5
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 2.6e-79 299.7 168 89.9
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 2.6e-79 299.7 168 89.9
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 4.5e-79 298.9 172 88.4
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 5.9e-79 298.5 171 88.3
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 5.9e-79 298.5 168 89.9
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 1.0e-78 297.7 172 86.6
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 1.3e-78 297.4 168 89.3
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 3.8e-78 295.8 172 86.0
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 3.8e-78 295.8 172 86.6
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 3.8e-78 295.8 172 87.2
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 5.0e-78 295.4 172 86.0
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 5.0e-78 295.4 172 86.0
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 5.0e-78 295.4 172 86.0
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.1e-77 294.3 172 87.2
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 1.1e-77 294.3 172 87.2
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 1.1e-77 294.3 172 86.0
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 1.1e-77 294.3 172 86.6
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 1.4e-77 293.9 172 85.5
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 2.5e-77 293.1 172 86.6
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 2.5e-77 293.1 172 86.0
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 4.2e-77 292.4 172 87.2
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 5.5e-77 292.0 170 85.9
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 7.2e-77 291.6 172 84.9
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 7.2e-77 291.6 172 85.5
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 9.4e-77 291.2 172 86.6
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 9.4e-77 291.2 172 86.0
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 1.2e-76 290.8 172 85.5
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 1.2e-76 290.8 171 86.5
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 1.6e-76 290.4 172 86.0
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 2.1e-76 290.0 171 85.4
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 3.6e-76 289.3 172 84.9
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 5.1e-75 285.4 172 84.3
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 8.8e-75 284.6 172 84.3
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 1.1e-74 284.3 172 83.1
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 1.1e-74 284.3 172 83.1
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 5.7e-74 282.0 170 84.7
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 5.7e-74 282.0 170 84.7
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 7.4e-74 281.6 172 85.5
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 7.4e-74 281.6 172 83.1
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 1.7e-73 280.4 169 83.4
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 2.8e-73 279.6 172 82.6
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 1.8e-72 276.9 171 81.3
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 2.4e-72 276.6 172 82.0
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 4.1e-72 275.8 172 82.6
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 5.3e-72 275.4 165 84.2
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 5.3e-72 275.4 172 82.0
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 5.3e-72 275.4 172 79.7
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 1.7e-70 270.4 205 72.2
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 9.4e-69 264.6 170 80.0
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 9.4e-69 264.6 221 66.5
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 1.2e-68 264.2 172 77.3
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 1.6e-68 263.8 172 78.5
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 2.1e-68 263.5 171 78.9
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 3.6e-68 262.7 172 77.3
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 2.3e-67 260.0 171 76.6
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 2.3e-67 260.0 171 76.6
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 2.3e-67 260.0 171 76.6
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 2.3e-67 260.0 171 76.6
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 2.3e-67 260.0 171 76.6
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 2.3e-67 260.0 172 79.1
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 3.0e-67 259.6 171 77.2
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 3.0e-67 259.6 172 77.3
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 5.2e-67 258.8 171 76.0
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 2.0e-66 256.9 171 76.6
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 2.0e-66 256.9 171 76.6
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 1.7e-65 253.8 166 74.7
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 2.2e-65 253.4 200 67.0
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 8.2e-65 251.5 166 78.3
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 2.4e-64 250.0 196 68.9
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 2.0e-63 246.9 168 76.2
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 2.7e-63 246.5 156 80.1
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 5.0e-62 242.3 149 84.6
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 5.0e-62 242.3 171 73.1
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 1.9e-61 240.4 150 82.7
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 5.5e-61 238.8 203 66.5
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 1.6e-60 237.3 156 78.2
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 2.1e-60 236.9 152 82.2
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 3.6e-60 236.1 168 70.8
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 1.4e-59 234.2 150 81.3
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 1.8e-59 233.8 166 70.5
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 4.0e-59 232.6 193 66.8
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 5.9e-55 218.8 170 66.5
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 1.0e-54 218.0 168 66.7
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 2.7e-52 209.9 149 73.2
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 3.0e-51 206.5 131 77.9
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 3.1e-48 196.4 118 87.3
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 8.9e-35 151.8 72 95.8
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 2.9e-33 146.7 108 72.2
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 2.9e-33 146.7 108 72.2
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 4.6e-31 139.4 93 81.7
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 2.5e-29 133.7 65 95.4
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 1.2e-28 131.3 124 61.3
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 6.2e-28 129.0 67 88.1
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 2.2e-25 120.6 94 69.1
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 8.3e-25 118.6 163 43.6
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 2.7e-23 113.6 172 37.2
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 1.7e-22 110.9 66 71.2
GSVIVG01021702001 Vitis vinifera HOM05D000300 ORTHO05D008505 6.8e-19 99.0 78 75.6
TAR626G1261 Trochodendron aralioides HOM05D000300 ORTHO05D008505 2.0e-18 97.4 69 81.2
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 3.4e-18 96.7 92 65.2
GSVIVG01021454001 Vitis vinifera HOM05D000300 ORTHO05D008505 4.4e-18 96.3 78 73.1
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 8.4e-17 92.0 67 70.1
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 4.1e-16 89.7 64 75.0
arahy.Tifrunner.gnm1.ann1.5AH57W Arachis hypogaea HOM05D000300 ORTHO05D008505 4.7e-12 76.3 51 84.3
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 2.0e-10 70.9 40 90.0
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 3.4e-10 70.1 64 65.6
GSVIVG01014364001 Vitis vinifera HOM05D000300 ORTHO05D008505 9.9e-10 68.6 32 90.6
arahy.Tifrunner.gnm1.ann1.1E0HE3 Arachis hypogaea HOM05D001903 ORTHO05D013215 3.2e-08 63.5 39 84.6
arahy.Tifrunner.gnm1.ann1.VIP1CP Arachis hypogaea HOM05D000058 ORTHO05D008505 2.7e-07 60.5 35 77.1


User provided reference genes

Program Settings