Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 8.6e-249 863.2 446 100.0
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 8.4e-228 793.5 447 92.2
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 1.3e-220 769.6 434 92.9
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 3.6e-194 681.8 449 79.7
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 8.2e-191 670.6 449 78.8
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.8e-190 669.5 449 78.8
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 2.4e-190 669.1 449 78.6
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 7.7e-189 664.1 449 76.8
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 5.0e-188 661.4 466 73.6
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 5.5e-187 657.9 447 76.3
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 2.3e-185 652.5 448 76.3
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 3.7e-183 645.2 449 76.6
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.6e-181 639.8 447 74.5
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 9.4e-179 630.6 447 73.4
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 1.6e-178 629.8 451 74.1
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 1.4e-177 626.7 451 72.5
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 8.8e-177 624.0 450 74.7
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 8.2e-175 617.5 446 72.6
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 5.3e-174 614.8 455 71.6
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 3.5e-173 612.1 456 71.3
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 6.5e-172 607.8 431 74.2
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 8.5e-172 607.4 448 70.1
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 3.2e-171 605.5 446 70.6
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 2.1e-170 602.8 447 71.4
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 1.4e-169 600.1 448 72.8
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 1.8e-169 599.7 449 70.4
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 8.8e-169 597.4 461 69.0
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 1.4e-166 590.1 447 70.0
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 3.5e-165 585.5 421 70.5
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 1.1e-163 580.5 450 69.3
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 4.2e-163 578.6 429 71.3
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 2.1e-162 576.2 421 70.1
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 2.8e-162 575.9 467 66.0
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 6.1e-162 574.7 429 71.6
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 4.0e-161 572.0 402 73.6
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 6.8e-161 571.2 448 66.1
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 1.2e-160 570.5 450 65.8
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 1.5e-160 570.1 450 67.6
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 3.4e-160 568.9 431 69.4
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 1.7e-159 566.6 446 66.1
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 1.7e-159 566.6 445 65.6
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.4e-158 563.5 403 70.2
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 5.4e-158 561.6 418 68.7
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.6e-157 560.1 427 66.5
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 2.0e-157 559.7 446 65.2
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 2.7e-157 559.3 441 66.9
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 2.3e-156 556.2 459 62.3
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 3.8e-156 555.4 421 69.1
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 5.0e-156 555.1 430 69.1
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 8.6e-156 554.3 447 66.9
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 1.5e-155 553.5 447 67.3
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 1.9e-155 553.1 452 65.0
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 8.0e-154 547.7 475 62.9
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.0e-153 547.4 445 68.1
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 1.4e-153 547.0 450 63.6
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 1.4e-153 547.0 447 66.9
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 5.2e-153 545.0 427 66.0
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 8.9e-153 544.3 478 60.3
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 1.5e-152 543.5 452 62.8
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.5e-152 543.5 427 65.8
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 3.4e-152 542.3 450 63.1
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 7.5e-152 541.2 447 64.0
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 7.5e-152 541.2 453 65.8
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 9.8e-152 540.8 414 66.4
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 2.9e-151 539.3 455 63.7
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 6.4e-151 538.1 355 76.6
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 1.1e-150 537.3 453 64.0
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 1.4e-150 537.0 422 65.9
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 1.4e-150 537.0 376 74.7
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 2.4e-150 536.2 450 63.3
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 7.0e-150 534.6 472 62.9
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 9.2e-150 534.3 447 62.9
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 2.3e-148 529.6 506 58.3
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 1.1e-147 527.3 460 62.2
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 1.9e-147 526.6 417 65.2
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.5e-147 526.2 473 60.7
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 3.3e-147 525.8 433 64.4
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 9.5e-147 524.2 473 61.1
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 9.5e-147 524.2 456 61.4
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 2.1e-146 523.1 384 71.1
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 3.1e-145 519.2 446 62.3
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.4e-144 515.8 453 61.1
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 5.8e-144 515.0 453 60.3
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 5.8e-144 515.0 453 60.3
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 5.8e-144 515.0 494 60.9
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 7.5e-144 514.6 454 60.8
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 9.8e-144 514.2 381 70.6
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.7e-143 512.3 451 61.6
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 2.4e-142 509.6 441 61.2
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 7.0e-142 508.1 420 62.4
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 4.6e-141 505.4 450 59.8
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 5.1e-140 501.9 472 60.6
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 1.1e-139 500.7 421 62.2
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 4.3e-139 498.8 397 66.2
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 9.5e-139 497.7 423 62.9
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 2.8e-138 496.1 396 64.9
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 8.1e-138 494.6 403 66.3
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 3.1e-137 492.7 460 58.7
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 3.1e-137 492.7 428 60.3
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 6.8e-137 491.5 429 60.6
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.2e-136 490.7 428 60.7
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 2.6e-136 489.6 446 59.0
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 7.5e-136 488.0 371 69.3
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 1.7e-135 486.9 488 58.2
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 4.9e-135 485.3 426 61.5
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 2.4e-134 483.0 441 59.9
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 4.1e-134 482.3 400 62.8
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 7.1e-134 481.5 426 60.3
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 7.1e-134 481.5 426 60.3
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 1.6e-133 480.3 441 59.6
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 4.6e-133 478.8 452 57.7
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 2.3e-132 476.5 322 76.1
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 7.3e-131 471.5 377 67.6
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 1.5e-128 463.8 409 60.1
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 2.6e-128 463.0 399 61.7
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 2.7e-125 453.0 409 58.7
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 7.3e-123 444.9 513 51.9
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 9.6e-123 444.5 459 51.4
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 2.1e-122 443.4 393 59.3
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.1e-122 443.4 448 55.4
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.1e-121 441.0 440 53.2
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 2.6e-120 436.4 264 82.6
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.9e-118 430.3 315 69.2
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 1.6e-117 427.2 418 55.0
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 3.0e-116 422.9 458 52.8
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 8.1e-114 414.8 434 50.9
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 2.4e-113 413.3 361 60.1
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 4.0e-113 412.5 394 58.1
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 5.3e-113 412.1 435 49.7
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 6.9e-113 411.8 301 71.4
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 9.9e-112 407.9 407 54.3
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 8.7e-108 394.8 329 59.3
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 8.4e-103 378.3 345 58.0
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 3.0e-100 369.8 455 46.4
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 1.3e-98 364.4 302 65.2
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 3.4e-96 356.3 405 50.4
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 1.0e-95 354.8 408 50.0
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 3.2e-94 349.7 408 50.0
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 3.0e-92 343.2 392 49.7
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 8.7e-92 341.7 366 49.5
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 4.3e-91 339.3 446 46.2
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 1.8e-89 334.0 271 67.5
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 1.7e-87 327.4 469 41.8
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 9.4e-86 321.6 433 45.7
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 1.4e-84 317.8 365 48.5
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 1.8e-84 317.4 365 48.5
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 1.3e-79 301.2 354 48.0
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 2.2e-79 300.4 353 49.0
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 1.4e-78 297.7 207 71.0
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 3.0e-76 290.0 375 45.9
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 3.9e-76 289.7 449 44.1
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 9.7e-75 285.0 448 43.5
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 9.4e-54 215.3 464 33.8
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 2.1e-53 214.2 151 77.5
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.2e-51 208.4 153 68.0
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.1e-46 191.8 134 67.9
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 1.0e-44 185.3 191 51.8
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.2e-35 155.2 94 76.6
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 7.8e-32 142.5 166 49.4
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 9.5e-30 135.6 148 59.5
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 1.2e-29 135.2 136 50.7
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.7e-26 124.8 133 51.9
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.1e-25 122.1 84 70.2
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 2.7e-24 117.5 119 51.3
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 2.7e-24 117.5 253 35.2
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 5.1e-23 113.2 99 50.5
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 1.2e-21 108.6 88 59.1
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 1.2e-21 108.6 72 77.8
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 3.6e-21 107.1 94 52.1
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 1.1e-20 105.5 101 50.5
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 3.4e-19 100.5 308 30.2
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 9.2e-17 92.4 64 78.1
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 1.0e-15 89.0 98 54.1
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.8e-13 80.9 183 33.3
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 4.7e-13 80.1 114 41.2
Atru.chr3.2263 Acer truncatum HOM05D003649 ORTHO05D004498 8.1e-13 79.3 88 60.2
Atru.chr3.2269 Acer truncatum HOM05D003649 ORTHO05D004498 8.1e-13 79.3 86 61.6
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 2.6e-11 74.3 124 40.3
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 4.4e-11 73.6 54 53.7
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 4.4e-11 73.6 54 53.7
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 1.7e-10 71.6 49 63.3
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 3.5e-08 63.9 39 76.9
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 2.3e-07 61.2 197 33.5
C07p16900 Brassica napus HOM05D003649 ORTHO05D040526 3.9e-07 60.5 84 41.7
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 1.9e-06 58.2 61 50.8
SHI14583 Sapria himalayana HOM05D003649 ORTHO05D004498 2.5e-06 57.8 102 43.1


User provided reference genes

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