Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 0.0e+00 1318.1 645 100.0
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 2.5e-305 1051.6 600 87.2
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 2.6e-169 599.7 633 55.0
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 5.4e-119 432.6 650 41.2
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 2.7e-110 403.7 594 42.4
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 2.4e-106 390.6 576 41.5
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 1.9e-103 380.9 593 40.5
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 3.2e-103 380.2 593 40.5
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 9.3e-103 378.6 557 41.3
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 2.1e-102 377.5 590 40.0
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 2.4e-90 337.4 331 53.8
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 2.5e-87 327.4 551 37.4
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 2.5e-87 327.4 555 37.1
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 4.7e-86 323.2 580 37.8
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 8.8e-85 318.9 560 37.5
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 1.8e-82 311.2 587 39.5
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 2.3e-77 294.3 544 37.9
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 3.9e-77 293.5 450 39.6
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 6.7e-77 292.7 443 38.4
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 8.8e-77 292.4 458 38.9
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 2.0e-76 291.2 569 37.8
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 2.6e-76 290.8 617 34.2
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 1.1e-74 285.4 553 35.3
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 7.0e-74 282.7 637 33.1
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 2.0e-73 281.2 507 36.5
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 7.7e-73 279.3 469 37.5
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 1.5e-71 275.0 452 37.2
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 3.6e-70 270.4 545 33.8
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 3.6e-70 270.4 464 35.6
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 7.0e-66 256.1 521 32.8
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 9.1e-66 255.8 796 29.4
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 5.9e-65 253.1 506 33.6
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 1.2e-62 245.4 695 30.1
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 1.6e-62 245.0 394 37.3
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 2.7e-62 244.2 503 32.4
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 3.6e-62 243.8 532 33.3
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 3.0e-61 240.7 502 32.9
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 5.2e-61 240.0 520 32.1
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 6.8e-61 239.6 435 37.9
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 3.4e-60 237.3 511 34.1
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 7.0e-58 229.6 526 31.6
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 1.1e-55 222.2 333 40.8
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 9.5e-55 219.2 507 32.9
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 1.6e-54 218.4 199 55.8
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 2.1e-54 218.0 507 33.3
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 3.0e-53 214.2 518 32.4
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 3.0e-53 214.2 521 31.3
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 1.2e-52 212.2 507 32.3
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 4.1e-50 203.8 510 31.0
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 5.4e-50 203.4 320 39.1
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 2.9e-48 197.6 362 37.6
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 1.1e-47 195.7 313 41.9
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 3.4e-44 184.1 298 37.2
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 4.4e-44 183.7 416 33.4
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 1.3e-43 182.2 317 37.5
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 3.2e-42 177.6 316 38.6
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 9.2e-42 176.0 230 43.9
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 2.0e-41 174.9 307 38.4
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 7.8e-41 172.9 445 31.7
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 5.6e-39 166.8 276 39.5
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 7.3e-39 166.4 317 33.8
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 9.5e-39 166.0 207 45.9
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 2.8e-38 164.5 276 39.1
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 2.8e-38 164.5 290 38.3
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 4.7e-38 163.7 291 36.8
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 4.0e-37 160.6 257 38.5
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 5.2e-37 160.2 271 39.5
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 2.0e-36 158.3 322 33.9
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 7.5e-36 156.4 268 35.4
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 7.5e-36 156.4 190 43.2
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 1.7e-35 155.2 315 34.9
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 3.7e-35 154.1 273 39.2
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 1.9e-34 151.8 220 40.9
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 4.1e-34 150.6 263 35.7
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 5.4e-34 150.2 166 47.0
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 7.0e-34 149.8 316 33.2
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 7.0e-34 149.8 323 33.4
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 4.6e-33 147.1 314 36.0
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 6.0e-33 146.7 313 35.1
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 6.0e-33 146.7 265 37.0
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 1.7e-32 145.2 279 35.8
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 3.0e-32 144.4 279 35.8
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 3.0e-32 144.4 262 34.7
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 5.1e-32 143.7 256 38.3
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 5.1e-32 143.7 258 37.2
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 8.6e-32 142.9 240 37.9
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 1.9e-31 141.7 344 32.8
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 9.5e-31 139.4 311 35.4
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 2.1e-30 138.3 177 43.5
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 2.1e-30 138.3 280 36.8
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 8.1e-30 136.3 241 34.4
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.1e-29 136.0 293 35.5
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 1.1e-29 136.0 301 34.2
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 1.4e-29 135.6 319 30.4
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 3.1e-29 134.4 98 56.1
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 4.0e-29 134.0 263 36.1
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 8.9e-29 132.9 234 38.0
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 8.9e-29 132.9 268 33.6
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 1.2e-28 132.5 335 32.5
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 3.4e-28 131.0 290 33.1
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 4.4e-28 130.6 199 34.2
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 4.4e-28 130.6 273 34.1
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 5.8e-28 130.2 264 32.6
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 3.7e-27 127.5 201 36.3
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 1.9e-26 125.2 154 47.4
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 3.2e-26 124.4 273 33.7
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 1.3e-24 119.0 270 31.9
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.2e-22 112.5 85 51.8
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 4.0e-21 107.5 276 29.7
SHI37128 Sapria himalayana HOM05D006067 ORTHO05D007327 5.2e-21 107.1 266 31.2
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 2.6e-20 104.8 317 31.2
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 2.9e-19 101.3 197 35.0
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 8.4e-19 99.8 114 40.4
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.1e-18 99.4 75 52.0
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 3.0e-16 91.3 178 30.9
Thecc.07G116600 Theobroma cacao HOM05D006067 ORTHO05D007327 7.3e-15 86.7 155 40.6
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 9.6e-15 86.3 149 32.2
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 1.6e-14 85.5 65 58.5
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 2.4e-13 81.6 179 32.4
SEGI_27593 Sequoiadendron giganteum HOM05D006067 ORTHO05D007327 5.3e-13 80.5 128 33.6
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 1.2e-12 79.3 258 27.1
FAN16G1756 Fragaria x ananassa HOM05D006067 ORTHO05D007327 7.6e-12 76.6 227 30.8
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 2.2e-11 75.1 76 50.0
Eucgr.F03268 Eucalyptus grandis HOM05D006067 ORTHO05D007327 2.9e-11 74.7 64 51.6
Nitab4.5_0000383g0160 Nicotiana tabacum HOM05D006067 ORTHO05D007327 2.7e-09 68.2 51 54.9
Mapoly1798s0001 Marchantia polymorpha HOM05D006067 ORTHO05D007327 3.9e-08 64.3 62 43.5
Actinidia09807 Actinidia chinensis HOM05D006067 ORTHO05D007327 1.5e-07 62.4 171 29.8
Lj1P829T26 Lonicera japonica HOM05D006067 ORTHO05D007327 1.9e-07 62.0 139 33.8
FAN21G2926 Fragaria x ananassa HOM05D006067 ORTHO05D007327 2.8e-06 58.2 131 30.5


User provided reference genes

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