Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.3e-57 225.3 112 100.0
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.6e-37 158.7 112 79.5
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 6.7e-33 144.1 92 83.7
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 2.4e-30 135.6 86 80.2
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 5.2e-25 117.9 100 73.0
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 1.1e-24 116.7 96 72.9
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 2.0e-24 115.9 106 69.8
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 4.4e-24 114.8 112 62.5
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 9.7e-24 113.6 102 64.7
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 4.8e-23 111.3 82 74.4
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 4.1e-22 108.2 96 64.6
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 3.5e-21 105.1 103 59.2
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 2.2e-20 102.4 87 63.2
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 8.5e-20 100.5 105 62.9
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.1e-19 100.1 105 62.9
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 3.2e-19 98.6 105 61.0
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.1e-18 95.9 105 61.0
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 3.6e-18 95.1 96 54.2
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 1.0e-17 93.6 106 59.4
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.0e-17 93.6 86 59.3
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 1.4e-17 93.2 100 53.0
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 1.4e-17 93.2 99 54.5
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 1.4e-17 93.2 99 54.5
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 1.4e-17 93.2 86 54.7
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 2.3e-17 92.4 97 57.7
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 8.8e-17 90.5 98 58.2
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 3.3e-16 88.6 112 54.5
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 4.4e-16 88.2 83 57.8
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 5.7e-16 87.8 87 56.3
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 1.3e-15 86.7 104 51.0
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 8.2e-15 84.0 102 55.9
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 1.4e-14 83.2 93 55.9
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 2.4e-14 82.4 101 54.5
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 2.4e-14 82.4 98 58.2
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 2.4e-14 82.4 117 50.4
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 2.0e-13 79.3 92 54.3
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 5.9e-13 77.8 78 57.7
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 6.5e-12 74.3 75 50.7
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 8.5e-12 73.9 89 44.9
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 8.5e-12 73.9 101 46.5
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 1.9e-11 72.8 95 48.4
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 1.9e-11 72.8 100 49.0
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.5e-11 72.4 48 75.0
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 4.2e-11 71.6 77 50.6
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 7.2e-11 70.9 104 48.1
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 7.2e-11 70.9 79 49.4
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 1.2e-10 70.1 78 53.8
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 1.6e-10 69.7 105 43.8
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 1.6e-10 69.7 104 44.2
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 2.1e-10 69.3 68 52.9
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 2.7e-10 68.9 85 47.1
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 3.6e-10 68.6 78 47.4
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 3.6e-10 68.6 89 43.8
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 3.6e-10 68.6 90 48.9
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 4.7e-10 68.2 96 46.9
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 4.7e-10 68.2 99 47.5
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 6.1e-10 67.8 94 44.7
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 6.1e-10 67.8 108 43.5
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 6.1e-10 67.8 101 41.6
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 8.0e-10 67.4 108 43.5
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.0e-09 67.0 104 42.3
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 1.0e-09 67.0 89 47.2
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 1.8e-09 66.2 96 43.8
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.8e-09 66.2 99 47.5
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 3.0e-09 65.5 102 42.2
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 4.0e-09 65.1 78 47.4
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 4.0e-09 65.1 86 47.7
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 5.2e-09 64.7 103 46.6
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 5.2e-09 64.7 93 44.1
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 5.2e-09 64.7 90 43.3
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 5.2e-09 64.7 75 50.7
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 5.2e-09 64.7 75 50.7
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 5.2e-09 64.7 97 43.3
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 5.2e-09 64.7 97 46.4
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 6.8e-09 64.3 75 50.7
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 6.8e-09 64.3 77 48.1
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 6.8e-09 64.3 101 41.6
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 6.8e-09 64.3 101 41.6
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 8.8e-09 63.9 113 46.9
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 8.8e-09 63.9 79 44.3
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 8.8e-09 63.9 81 40.7
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 8.8e-09 63.9 81 40.7
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 8.8e-09 63.9 77 50.6
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 1.5e-08 63.2 88 46.6
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 1.5e-08 63.2 77 48.1
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 1.5e-08 63.2 94 44.7
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 2.0e-08 62.8 82 46.3
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 2.0e-08 62.8 84 41.7
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 2.6e-08 62.4 87 44.8
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 2.6e-08 62.4 98 43.9
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 3.4e-08 62.0 82 51.2
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 3.4e-08 62.0 79 49.4
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 3.4e-08 62.0 99 42.4
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 3.4e-08 62.0 100 41.0
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 4.4e-08 61.6 87 43.7
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 4.4e-08 61.6 97 40.2
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 4.4e-08 61.6 104 44.2
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 4.4e-08 61.6 83 48.2
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 4.4e-08 61.6 76 47.4
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 4.4e-08 61.6 98 44.9
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 4.4e-08 61.6 110 37.3
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 5.7e-08 61.2 64 48.4
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 7.5e-08 60.8 70 50.0
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 7.5e-08 60.8 75 46.7
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 1.3e-07 60.1 78 44.9
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 1.3e-07 60.1 62 58.1
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.7e-07 59.7 62 48.4
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 1.7e-07 59.7 61 49.2
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 1.7e-07 59.7 104 42.3
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.7e-07 59.7 104 42.3
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 1.7e-07 59.7 79 46.8
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 2.2e-07 59.3 68 48.5
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 2.8e-07 58.9 99 42.4
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 2.8e-07 58.9 85 43.5
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 3.7e-07 58.5 81 39.5
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 4.8e-07 58.2 95 43.2
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 4.8e-07 58.2 73 42.5
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 6.3e-07 57.8 93 48.4
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 6.3e-07 57.8 80 46.2
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 8.3e-07 57.4 85 43.5
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 8.3e-07 57.4 105 35.2
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 1.4e-06 56.6 50 56.0
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.4e-06 56.6 80 46.2
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.8e-06 56.2 96 41.7
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.1e-06 55.5 62 43.5
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 3.1e-06 55.5 85 42.4
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 7.0e-06 54.3 97 45.4


User provided reference genes

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