Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 0.0e+00 1310.4 779 100.0
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 2.9e-300 1035.0 734 81.2
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 8.4e-300 1033.5 735 80.8
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 1.1e-246 857.1 787 67.1
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 2.1e-234 816.2 717 69.0
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 4.2e-206 722.2 803 58.4
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 2.3e-180 636.7 753 54.3
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 1.1e-161 574.7 796 53.3
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 1.4e-161 574.3 794 54.7
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 2.0e-155 553.9 796 53.6
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 4.5e-152 542.7 809 49.9
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 1.7e-151 540.8 793 47.9
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 5.0e-151 539.3 801 52.4
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 1.9e-150 537.3 796 50.5
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 2.1e-149 533.9 792 52.0
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 4.0e-148 529.6 808 47.3
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 6.7e-148 528.9 793 52.1
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 7.7e-144 515.4 837 47.0
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 2.5e-142 510.4 806 48.4
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 3.2e-142 510.0 810 47.9
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 6.8e-140 502.3 806 47.0
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 4.4e-139 499.6 794 45.0
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.2e-136 491.5 793 44.8
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 4.5e-136 489.6 813 45.4
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.3e-135 488.0 813 44.8
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 2.5e-134 483.8 805 48.0
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 3.2e-134 483.4 811 50.1
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 1.2e-133 481.5 826 47.5
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.6e-133 481.1 788 44.5
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.0e-132 476.5 802 46.1
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 1.2e-131 474.9 787 48.3
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 1.2e-131 474.9 800 46.8
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 3.4e-131 473.4 792 45.7
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 3.4e-131 473.4 766 45.3
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 9.8e-131 471.9 824 44.5
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 4.9e-130 469.5 786 43.9
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 3.1e-129 466.8 803 44.8
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 7.0e-129 465.7 778 43.7
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 9.2e-129 465.3 793 45.9
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.9e-126 457.6 792 43.8
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 3.3e-126 456.8 762 49.0
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 5.6e-126 456.1 823 44.1
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 8.0e-125 452.2 820 44.6
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 2.0e-123 447.6 791 45.9
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 2.9e-122 443.7 793 44.6
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 1.6e-120 438.0 797 45.5
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 2.0e-120 437.6 795 44.5
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 3.5e-120 436.8 836 41.5
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 1.5e-118 431.4 765 42.7
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 1.6e-117 427.9 838 40.2
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 1.8e-116 424.5 812 46.1
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 8.9e-116 422.2 837 42.1
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 1.5e-115 421.4 886 43.0
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 7.5e-115 419.1 796 42.7
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.9e-114 416.4 726 43.7
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 5.4e-113 412.9 801 41.2
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 8.6e-111 405.6 708 43.2
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 9.5e-110 402.1 788 40.7
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 9.5e-110 402.1 789 41.7
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 2.1e-109 401.0 795 47.8
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 6.2e-109 399.4 660 45.6
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 2.3e-108 397.5 733 45.0
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 8.9e-108 395.6 808 46.0
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 9.8e-107 392.1 784 39.9
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.1e-105 388.7 791 41.5
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 2.3e-103 380.9 826 47.1
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 3.9e-103 380.2 776 42.0
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 5.1e-103 379.8 752 39.9
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 1.1e-102 378.6 788 40.1
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 3.6e-101 373.6 754 39.8
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 1.8e-100 371.3 801 38.8
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 2.3e-100 370.9 789 40.4
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 4.0e-100 370.2 773 40.4
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 2.0e-99 367.9 813 39.0
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 5.8e-99 366.3 821 42.6
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 7.6e-99 365.9 782 40.0
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 1.3e-98 365.2 808 38.5
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 1.7e-98 364.8 759 39.3
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 2.2e-98 364.4 732 40.7
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 4.9e-98 363.2 797 40.5
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 4.1e-97 360.1 671 43.8
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 1.0e-95 355.5 758 39.3
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 1.0e-95 355.5 818 39.2
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 2.5e-94 350.9 808 39.1
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 3.3e-94 350.5 800 39.6
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 1.6e-93 348.2 805 41.6
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 1.5e-91 341.7 829 38.4
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 2.6e-91 340.9 754 37.0
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 7.1e-89 332.8 798 38.8
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 1.6e-88 331.6 785 36.3
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 2.1e-88 331.3 776 40.1
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 7.8e-88 329.3 826 41.3
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 1.3e-87 328.6 765 36.9
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 3.9e-87 327.0 792 41.9
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 4.3e-86 323.6 741 39.9
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 2.4e-84 317.8 705 41.3
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 6.9e-84 316.2 758 38.7
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 1.5e-83 315.1 799 39.9
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 7.6e-83 312.8 767 41.7
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 8.4e-82 309.3 759 37.2
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.2e-80 305.4 772 35.6
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 1.3e-79 302.0 794 36.5
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.8e-79 301.6 791 35.8
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 2.3e-79 301.2 761 36.3
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 2.5e-78 297.7 759 36.6
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 2.5e-78 297.7 730 37.0
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 5.3e-76 290.0 788 38.7
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 6.9e-76 289.7 746 36.1
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 9.0e-76 289.3 800 37.8
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 7.6e-75 286.2 805 34.8
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 2.2e-74 284.6 756 36.4
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 3.9e-71 273.9 803 36.4
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 4.3e-70 270.4 803 35.4
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.3e-69 268.9 763 34.2
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 2.1e-69 268.1 779 38.8
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 1.3e-66 258.8 746 33.1
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 3.8e-66 257.3 737 33.2
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 5.1e-63 246.9 762 31.9
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 1.3e-58 232.3 787 33.7
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.3e-58 232.3 746 32.7
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 5.0e-58 230.3 844 32.2
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.5e-57 228.0 746 32.8
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 9.3e-57 226.1 652 34.4
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 4.6e-56 223.8 670 32.5
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 7.4e-54 216.5 746 33.1
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 1.8e-52 211.8 801 32.8
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 1.8e-52 211.8 809 31.4
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 1.8e-52 211.8 800 31.5
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 4.1e-52 210.7 802 31.0
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 6.9e-52 209.9 891 31.1
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 5.0e-50 203.8 779 30.3
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 8.5e-50 203.0 884 32.1
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 1.1e-49 202.6 801 31.6
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.4e-49 202.2 527 36.8
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 1.2e-48 199.1 868 31.5
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 6.1e-48 196.8 329 42.9
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 1.8e-47 195.3 156 66.0
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 3.9e-47 194.1 750 31.1
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 8.8e-47 193.0 801 33.0
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 3.3e-46 191.0 742 29.6
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 1.4e-44 185.7 712 31.9
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 2.4e-44 184.9 702 31.8
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 5.3e-44 183.7 794 28.3
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 1.7e-42 178.7 732 31.4
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 3.2e-41 174.5 291 45.0
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 4.2e-41 174.1 625 35.0
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 6.1e-40 170.2 305 40.0
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 1.1e-38 166.0 245 51.0
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 4.4e-38 164.1 231 46.3
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 2.2e-37 161.8 742 29.4
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 8.2e-37 159.8 217 48.4
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 6.5e-34 150.2 498 31.9
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 8.5e-34 149.8 346 36.7
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 6.7e-31 140.2 737 27.1
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 2.2e-29 135.2 135 55.6
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 2.8e-29 134.8 189 45.0
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 4.8e-29 134.0 553 30.9
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 1.1e-28 132.9 754 29.2
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 1.8e-28 132.1 159 52.2
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 3.5e-27 127.9 368 34.2
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 9.4e-25 119.8 123 65.0
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 8.0e-24 116.7 107 69.2
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 9.8e-22 109.8 197 41.1
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 4.1e-20 104.4 204 36.8
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 4.7e-16 90.9 352 27.3
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 1.8e-15 89.0 50 86.0
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 5.2e-15 87.4 731 24.8
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 4.9e-13 80.9 262 29.8
Lsat_1_v5_gn_5_162921 Lactuca sativa HOM05D004118 ORTHO05D004686 1.8e-12 79.0 74 62.2
CDE02G0061 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 2.9e-10 71.6 606 23.1
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 1.6e-08 65.9 312 26.6
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 2.1e-08 65.5 296 34.5
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 4.7e-08 64.3 315 31.7
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 4.0e-07 61.2 314 28.3
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 6.8e-07 60.5 309 28.5
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 6.8e-07 60.5 311 27.3
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 1.5e-06 59.3 310 27.7
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 1.5e-06 59.3 317 27.1
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 5.7e-06 57.4 84 51.2
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 7.5e-06 57.0 311 28.6
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 9.8e-06 56.6 311 28.3


User provided reference genes

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