Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 0.0e+00 1682.2 864 100.0
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 0.0e+00 1649.4 864 97.9
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 0.0e+00 1423.7 833 88.1
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 0.0e+00 1373.2 855 85.0
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 0.0e+00 1103.6 871 67.3
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 0.0e+00 1091.6 870 67.4
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 1.2e-311 1072.8 879 66.0
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 2.9e-309 1065.1 884 64.3
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 3.2e-308 1061.6 879 64.6
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 4.6e-307 1057.7 874 65.2
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 3.1e-303 1045.0 879 64.2
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 3.2e-300 1035.0 880 61.5
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 9.7e-297 1023.5 869 62.8
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 1.6e-296 1022.7 869 63.2
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 1.6e-296 1022.7 879 62.2
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 2.8e-296 1021.9 881 60.6
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.1e-295 1020.0 869 62.9
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 5.9e-294 1014.2 881 61.1
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 7.2e-292 1007.3 880 60.2
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.1e-289 1000.0 880 60.0
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 6.3e-288 994.2 884 62.6
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 4.7e-283 978.0 882 60.8
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.2e-282 974.5 880 59.1
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.1e-281 973.4 874 61.8
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.1e-281 973.4 880 59.1
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 8.2e-280 967.2 881 61.1
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 1.6e-278 963.0 745 68.5
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 2.0e-278 962.6 735 68.8
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.3e-277 959.9 886 59.4
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 1.2e-275 953.4 886 59.4
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 7.5e-273 944.1 919 56.8
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 6.3e-272 941.0 886 56.8
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 8.2e-272 940.6 882 59.0
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 1.8e-271 939.5 833 58.7
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 1.8e-271 939.5 889 56.5
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 2.0e-270 936.0 917 57.1
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 1.6e-267 926.4 884 57.1
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 2.0e-265 919.5 935 54.5
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 9.1e-263 910.6 884 56.4
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 1.6e-262 909.8 884 56.3
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.3e-261 906.7 897 55.7
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 2.2e-261 906.0 935 56.5
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 6.5e-261 904.4 860 56.6
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.5e-260 903.3 871 54.6
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 6.1e-259 897.9 887 55.2
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 1.8e-258 896.3 880 55.7
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 2.3e-258 896.0 880 54.5
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.2e-254 883.6 851 58.9
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 2.9e-253 879.0 880 55.3
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 2.9e-253 879.0 881 54.8
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 3.3e-252 875.5 881 54.5
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 3.3e-252 875.5 881 54.8
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 2.6e-249 865.9 877 54.6
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 9.8e-249 864.0 724 63.8
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 1.4e-247 860.1 865 53.8
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 1.5e-244 850.1 855 54.2
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 1.9e-244 849.7 884 53.7
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 2.8e-243 845.9 877 53.1
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 8.0e-243 844.3 878 53.3
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 2.3e-242 842.8 871 53.0
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 2.2e-240 836.3 884 52.0
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 1.6e-235 820.1 888 51.7
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 3.4e-233 812.4 877 49.7
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 1.9e-231 806.6 879 50.7
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 5.4e-231 805.1 949 50.4
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 1.2e-230 803.9 882 49.3
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 3.3e-228 795.8 898 50.1
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 9.5e-228 794.3 886 50.5
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 1.2e-227 793.9 907 49.9
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 1.8e-226 790.0 692 60.0
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 2.7e-222 776.2 887 49.5
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 1.3e-221 773.9 881 48.7
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 1.9e-220 770.0 725 56.6
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 2.5e-220 769.6 646 64.1
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 7.3e-220 768.1 877 48.7
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 2.1e-219 766.5 882 49.8
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 1.1e-218 764.2 892 50.0
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 4.4e-217 758.8 904 48.3
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.3e-216 757.3 877 49.9
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 4.2e-215 752.3 827 52.0
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 5.4e-215 751.9 693 58.0
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 7.8e-214 748.0 876 47.3
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 1.3e-211 740.7 881 46.8
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 4.0e-210 735.7 881 46.7
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 6.9e-210 734.9 926 46.5
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 1.2e-209 734.2 884 46.7
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 2.0e-209 733.4 884 46.6
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 3.4e-209 732.6 882 47.3
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 9.9e-209 731.1 884 46.4
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 8.4e-208 728.0 885 47.3
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 1.4e-207 727.2 887 46.8
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 6.0e-206 721.8 876 47.5
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.3e-203 714.1 878 46.9
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 2.8e-203 713.0 882 47.8
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 1.5e-201 707.2 703 56.2
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 1.3e-200 704.1 663 56.0
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 6.4e-200 701.8 851 48.3
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 5.6e-196 688.7 790 48.7
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 9.6e-196 688.0 623 58.9
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.3e-189 667.5 881 44.6
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 8.7e-189 664.8 872 45.4
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 5.7e-188 662.1 694 53.9
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 3.4e-169 599.7 695 48.6
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.3e-168 597.8 685 50.8
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 1.9e-167 594.0 877 42.3
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 7.7e-161 572.0 547 56.5
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 1.9e-151 540.8 786 42.1
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 1.4e-149 534.6 747 43.1
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 2.0e-148 530.8 633 47.7
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 4.0e-141 506.5 902 38.9
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 1.5e-140 504.6 868 36.9
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 5.0e-128 463.0 696 40.7
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.5e-124 451.4 542 44.6
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 1.3e-115 421.8 757 38.2
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 4.6e-105 386.7 256 77.0
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 5.8e-100 369.8 603 37.6
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 3.2e-98 364.0 241 79.3
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 2.3e-96 357.8 810 33.5
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 6.6e-96 356.3 282 68.4
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 1.3e-88 332.0 721 32.7
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.4e-85 321.2 228 71.1
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 9.0e-85 319.3 542 39.1
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 5.8e-84 316.6 992 28.3
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 5.8e-84 316.6 992 28.3
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 2.5e-79 301.2 192 80.2
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 2.1e-78 298.1 815 29.3
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 3.7e-78 297.4 527 36.4
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 2.0e-76 291.6 193 77.2
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 9.3e-74 282.7 199 70.4
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 6.7e-72 276.6 193 71.5
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 4.6e-65 253.8 345 41.4
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 8.8e-64 249.6 359 42.6
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 1.2e-57 229.2 752 28.5
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.0e-56 226.1 275 48.7
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 1.0e-56 226.1 189 59.3
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.7e-54 218.8 214 50.9
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 1.1e-50 206.1 272 47.4
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 5.5e-50 203.8 138 77.5
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.4e-48 199.1 213 49.3
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 5.7e-47 193.7 231 48.1
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.3e-46 192.6 102 93.1
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 7.7e-44 183.3 143 68.5
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 2.2e-43 181.8 202 48.5
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 2.7e-41 174.9 220 45.9
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 8.0e-41 173.3 192 47.4
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 2.6e-39 168.3 164 53.0
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.6e-39 168.3 235 45.5
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 1.3e-38 166.0 108 73.1
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 1.6e-33 149.1 178 44.4
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 1.1e-29 136.3 84 83.3
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 8.6e-27 126.7 108 63.9
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 2.5e-26 125.2 107 63.6
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 9.5e-26 123.2 101 66.3
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 4.9e-22 110.9 110 56.4
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 2.4e-21 108.6 334 29.0
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 3.1e-21 108.2 186 38.2
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 5.9e-20 104.0 203 34.0
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 1.0e-19 103.2 171 36.8
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 1.9e-18 99.0 172 38.4
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 2.2e-14 85.5 113 38.1
Potri.006G203601 Populus trichocarpa HOM05D004248 ORTHO05D004978 5.4e-13 80.9 55 81.8
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 1.3e-11 76.3 50 72.0
SHI10296 Sapria himalayana HOM05D000002 ORTHO05D000001 8.0e-09 67.0 73 50.7
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 1.4e-08 66.2 63 58.7
SEGI_15424 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 2.9e-06 58.5 88 38.6


User provided reference genes

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