Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 2.3e-163 578.9 312 100.0
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 2.6e-143 512.3 307 89.9
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 6.3e-97 358.2 317 66.9
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 8.8e-91 337.8 315 62.2
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 5.7e-90 335.1 315 62.5
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 1.2e-87 327.4 314 61.5
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 3.5e-87 325.9 313 61.7
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 1.0e-86 324.3 323 61.9
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 5.0e-86 322.0 308 60.4
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 3.2e-85 319.3 320 60.0
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 5.5e-85 318.5 295 61.4
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.2e-82 310.8 315 58.4
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 1.2e-82 310.8 296 60.1
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 2.0e-82 310.1 294 62.6
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 2.6e-82 309.7 303 61.4
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 5.7e-82 308.5 304 60.5
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 3.7e-81 305.8 304 60.2
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 4.9e-81 305.4 315 56.2
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 5.4e-80 302.0 310 57.7
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 2.7e-79 299.7 310 58.4
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 5.9e-79 298.5 319 57.1
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 5.9e-79 298.5 317 56.5
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 7.8e-79 298.1 310 58.4
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.3e-78 296.6 323 57.3
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 2.9e-78 296.2 310 58.4
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 3.8e-78 295.8 310 57.7
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 3.3e-77 292.7 321 56.7
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 7.3e-77 291.6 310 57.7
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 2.1e-76 290.0 319 55.5
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 3.6e-76 289.3 295 56.9
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 2.3e-75 286.6 304 57.9
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 6.8e-75 285.0 318 56.3
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 1.3e-73 280.8 316 53.5
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 2.2e-73 280.0 293 54.6
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 1.1e-72 277.7 316 53.8
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 1.1e-72 277.7 316 53.8
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 1.8e-72 276.9 316 57.0
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 2.4e-72 276.6 316 53.5
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 1.2e-71 274.2 328 53.4
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 2.0e-71 273.5 293 59.0
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 4.6e-71 272.3 295 53.2
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 6.6e-70 268.5 299 56.9
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 9.5e-69 264.6 292 53.1
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 4.7e-68 262.3 291 53.6
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 6.2e-68 261.9 299 52.8
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 1.0e-67 261.2 299 51.8
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 1.0e-67 261.2 298 54.7
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 6.8e-67 258.5 334 50.9
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 6.8e-67 258.5 318 54.4
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 1.5e-66 257.3 292 53.4
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 2.0e-66 256.9 292 52.4
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 2.0e-66 256.9 284 53.5
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 2.6e-66 256.5 288 51.7
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 1.3e-65 254.2 319 50.8
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 6.4e-65 251.9 304 50.3
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.4e-64 250.8 334 48.5
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.4e-64 250.8 334 48.5
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 1.2e-63 247.7 305 50.8
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 2.0e-63 246.9 311 49.2
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 2.0e-63 246.9 247 57.9
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 2.7e-63 246.5 309 50.8
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 2.7e-63 246.5 306 49.3
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 4.6e-63 245.7 319 51.7
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 6.0e-63 245.4 309 50.8
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 7.8e-63 245.0 304 49.7
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 1.0e-62 244.6 303 52.8
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 1.7e-62 243.8 302 53.0
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 2.3e-62 243.4 311 48.9
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 3.0e-62 243.0 285 53.7
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 3.0e-62 243.0 314 51.3
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 3.0e-62 243.0 306 49.7
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 3.0e-62 243.0 288 52.8
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 3.9e-62 242.7 307 48.5
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 3.9e-62 242.7 292 50.7
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 5.0e-62 242.3 306 50.0
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 6.6e-62 241.9 281 54.8
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 2.5e-61 240.0 335 48.4
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 3.3e-61 239.6 311 49.8
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 7.3e-61 238.4 310 50.0
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 1.2e-60 237.7 307 48.2
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 2.1e-60 236.9 310 50.0
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 8.1e-60 235.0 293 49.1
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 1.1e-59 234.6 303 50.2
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 1.4e-59 234.2 296 48.0
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 2.3e-59 233.4 310 49.4
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 2.3e-59 233.4 310 49.4
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 5.2e-59 232.3 293 50.5
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 5.2e-59 232.3 293 50.5
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 5.2e-59 232.3 311 50.2
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 9.8e-58 228.0 295 52.5
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 2.9e-57 226.5 336 45.2
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 6.4e-57 225.3 293 50.9
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 1.4e-56 224.2 311 49.2
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 2.4e-56 223.4 290 47.9
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 4.1e-56 222.6 301 48.2
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 7.1e-56 221.9 302 48.3
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 9.2e-56 221.5 280 48.6
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 9.2e-56 221.5 316 48.4
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 2.7e-55 219.9 301 48.2
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 6.0e-55 218.8 283 51.2
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 1.0e-54 218.0 300 50.0
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 3.0e-54 216.5 304 48.4
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 5.1e-54 215.7 299 48.2
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 7.3e-53 211.8 189 63.5
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 3.6e-52 209.5 289 47.8
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 1.1e-51 208.0 316 46.5
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 4.0e-51 206.1 263 51.0
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 8.9e-51 204.9 293 47.1
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 1.5e-50 204.1 289 47.1
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 4.4e-50 202.6 293 46.8
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 7.6e-50 201.8 304 44.7
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 1.7e-49 200.7 291 45.7
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 4.1e-48 196.1 284 44.7
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 1.3e-46 191.0 259 50.6
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 2.3e-46 190.3 292 43.8
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 6.6e-46 188.7 279 43.4
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 8.6e-46 188.3 279 43.0
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 8.6e-46 188.3 330 43.3
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 8.1e-44 181.8 292 44.5
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 5.1e-30 136.0 158 53.2
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 4.3e-29 132.9 283 36.7
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 9.6e-29 131.7 247 39.7
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 2.4e-27 127.1 136 55.9
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 7.6e-18 95.5 173 39.9
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 8.4e-17 92.0 119 47.9
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 1.2e-15 88.2 106 51.9
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 3.3e-13 80.1 193 35.8
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.4e-11 74.7 161 39.8
SGA_v2.0_scaffold106G30660 Striga asiatica HOM05D006030 ORTHO05D007475 2.2e-09 67.4 95 45.3


User provided reference genes

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