Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 8.7e-222 773.5 430 100.0
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 1.8e-198 696.0 430 90.2
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 7.2e-192 674.1 433 87.5
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 2.0e-186 656.0 432 80.3
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.6e-186 655.6 432 84.3
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 3.4e-186 655.2 435 78.9
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 7.7e-186 654.1 435 80.2
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 5.0e-185 651.4 437 79.4
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 2.5e-184 649.0 436 83.7
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 1.2e-183 646.7 429 81.8
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 7.9e-183 644.0 431 78.9
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 2.3e-182 642.5 435 80.9
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 1.1e-181 640.2 436 78.2
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.0e-181 639.4 432 82.9
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 2.0e-181 639.4 432 81.9
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 6.3e-180 634.4 430 79.1
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 1.8e-179 632.9 437 77.8
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 4.1e-179 631.7 434 77.4
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 4.2e-176 621.7 451 76.9
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 5.5e-176 621.3 432 82.2
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 1.6e-175 619.8 438 77.2
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 3.6e-175 618.6 467 76.2
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 3.6e-175 618.6 437 77.1
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 8.8e-174 614.0 434 81.1
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 8.8e-174 614.0 431 77.0
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.6e-173 612.5 438 79.2
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 5.7e-173 611.3 437 78.3
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 5.7e-173 611.3 431 76.8
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 5.7e-173 611.3 430 76.7
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 1.3e-172 610.1 436 78.7
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 3.7e-172 608.6 430 76.5
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 4.8e-172 608.2 424 75.5
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 1.1e-171 607.1 420 74.8
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 1.8e-171 606.3 429 74.1
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.4e-171 605.9 437 78.3
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 7.0e-171 604.4 430 79.5
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 4.5e-170 601.7 433 76.4
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 7.7e-170 600.9 434 73.5
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 1.3e-169 600.1 434 77.6
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 1.1e-168 597.0 438 79.2
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 2.5e-168 595.9 430 78.1
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 4.2e-168 595.1 432 78.5
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 1.2e-167 593.6 426 78.6
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 2.7e-167 592.4 428 73.8
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 2.7e-167 592.4 438 73.5
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 4.7e-167 591.7 426 75.4
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 4.7e-167 591.7 426 75.4
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 4.7e-167 591.7 438 71.7
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 8.0e-167 590.9 426 75.1
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 8.0e-167 590.9 426 75.1
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 8.0e-167 590.9 426 75.1
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 8.0e-167 590.9 425 75.3
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 3.0e-166 589.0 423 73.5
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 3.0e-166 589.0 434 73.5
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 1.2e-165 587.0 430 72.3
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 4.4e-165 585.1 434 73.3
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 5.7e-165 584.7 433 74.1
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 7.5e-165 584.3 426 74.4
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 2.2e-164 582.8 426 74.2
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 2.2e-164 582.8 426 74.2
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 1.1e-163 580.5 435 70.8
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 1.4e-163 580.1 426 73.9
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 1.4e-163 580.1 434 73.0
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 1.4e-163 580.1 426 73.0
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 1.4e-163 580.1 429 72.3
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 2.0e-162 576.2 438 70.3
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 2.0e-162 576.2 429 71.8
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 2.7e-162 575.9 411 75.9
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 3.5e-162 575.5 435 70.8
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 3.5e-162 575.5 442 71.3
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 4.5e-162 575.1 431 72.6
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 4.5e-162 575.1 426 73.9
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 7.7e-162 574.3 429 74.4
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 1.0e-161 573.9 417 74.8
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 2.9e-161 572.4 426 73.0
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 2.9e-161 572.4 475 68.4
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 3.8e-161 572.0 430 76.7
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 6.5e-161 571.2 451 71.6
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 6.5e-161 571.2 426 73.7
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 2.5e-160 569.3 407 74.4
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 3.2e-160 568.9 425 71.3
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 4.2e-160 568.5 430 70.0
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 2.1e-159 566.2 430 71.6
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 3.6e-159 565.5 433 70.4
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 6.1e-159 564.7 429 70.2
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 1.4e-158 563.5 386 76.9
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 2.0e-157 559.7 425 69.2
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 3.4e-157 558.9 431 69.6
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 9.8e-157 557.4 429 72.5
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.8e-156 555.8 437 69.8
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 4.8e-156 555.1 433 67.7
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 3.1e-155 552.4 442 70.4
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 4.1e-155 552.0 469 68.7
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 5.4e-155 551.6 451 69.2
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 7.0e-155 551.2 422 77.0
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 9.1e-155 550.8 431 69.1
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 2.3e-153 546.2 427 74.7
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 7.2e-152 541.2 472 66.3
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 4.0e-150 535.4 424 68.2
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 1.5e-149 533.5 517 63.2
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 1.3e-148 530.4 422 66.8
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 2.2e-148 529.6 380 78.2
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 2.8e-148 529.3 486 67.7
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 2.3e-145 519.6 383 78.9
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 8.6e-145 517.7 440 67.7
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 1.9e-144 516.5 389 73.0
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 2.8e-143 512.7 515 58.1
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 1.7e-140 503.4 436 63.8
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 2.2e-140 503.1 427 66.3
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 1.1e-139 500.7 416 64.2
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 2.7e-138 496.1 434 65.4
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 3.6e-135 485.7 384 75.3
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 2.3e-134 483.0 413 63.9
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.6e-133 479.6 426 64.1
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 1.2e-130 470.7 368 69.3
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 1.0e-129 467.6 414 65.5
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 2.3e-129 466.5 326 80.7
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 1.7e-124 450.3 418 57.7
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 2.1e-122 443.4 446 54.5
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.0e-121 441.0 394 61.9
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 6.6e-121 438.3 397 64.5
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 3.6e-119 432.6 423 56.3
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 2.2e-116 423.3 427 55.5
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 1.2e-109 401.0 346 64.2
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 2.2e-108 396.7 432 57.4
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.2e-106 391.0 433 51.5
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.8e-103 379.8 350 60.6
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 9.1e-62 241.9 383 38.4
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 4.2e-59 233.0 223 58.3
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 1.7e-55 221.1 424 36.1
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 8.5e-44 182.2 198 66.2
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 2.4e-30 137.5 84 82.1
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 1.2e-18 98.6 55 85.5
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 2.8e-18 97.4 46 97.8
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 2.8e-18 97.4 46 97.8
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 8.1e-10 69.3 50 72.0


User provided reference genes

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