Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2159.8 1124 100.0
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 1797.7 1135 84.9
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1772.7 1134 83.8
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 1611.3 1140 76.0
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 1584.3 1147 75.0
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 1567.7 1143 74.2
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 1529.2 1138 72.0
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1527.7 1131 71.4
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 1523.1 1144 72.0
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 1509.2 1116 73.0
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 1504.2 1139 71.6
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 1496.5 1140 70.4
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 1486.9 1123 70.8
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 1483.4 1141 69.9
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 1482.6 1119 71.0
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1481.5 1131 69.6
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 1480.3 1132 69.8
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1476.8 1131 69.2
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 1475.7 1131 69.2
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1474.9 1140 70.3
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1472.6 1131 69.0
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 1465.7 1118 70.1
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1463.7 1130 69.0
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1458.4 1144 69.0
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 1457.2 1127 68.9
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 1456.8 1145 68.7
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 1456.0 1151 68.3
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 1445.6 1116 69.1
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 1441.0 1300 64.2
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 1439.9 1200 65.3
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 1433.3 1116 69.1
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 1420.2 1142 68.3
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 1417.9 1147 67.9
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 1417.5 1142 67.2
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 1411.7 1144 67.6
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 1411.0 1141 67.7
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 1407.9 1137 66.5
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 1393.3 1139 65.4
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 1390.6 1097 66.7
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 1389.8 1144 64.7
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 1386.3 1168 64.6
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 1385.5 1105 67.7
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 1375.9 1140 65.7
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 1374.8 1130 66.0
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 1374.4 1107 66.9
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 1374.4 1125 66.2
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 1373.6 1141 64.3
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 1370.1 1116 66.5
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1364.4 1133 65.8
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 1362.8 1165 62.8
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 1362.4 1110 66.1
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 1359.7 1098 66.7
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 1358.6 1131 65.0
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 1358.6 1145 64.2
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 1358.6 1141 63.5
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1354.3 1153 65.7
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1344.7 1219 61.4
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1340.9 1100 66.9
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 1336.2 1133 64.9
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 1329.7 1144 64.8
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 1328.5 1132 64.1
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 1328.2 1159 62.9
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 1325.5 1138 64.9
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 1325.1 1131 65.1
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 1321.6 1131 64.6
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 1321.6 1138 64.4
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 1319.3 1120 64.4
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 1315.1 1126 64.4
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 1314.7 1224 61.8
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 1307.7 1129 64.3
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 1307.7 1133 63.7
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1307.7 1158 62.3
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 1307.0 1106 63.3
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1303.9 1195 62.3
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 1298.5 1124 63.9
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 1297.3 1132 64.7
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 1292.7 1104 63.2
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 1291.6 1119 63.0
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 1290.8 1173 61.2
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1288.1 1141 62.0
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 1285.0 1102 62.5
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1278.5 1123 63.5
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1274.2 1127 63.0
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 1273.1 1115 60.2
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 1250.3 834 75.4
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1234.9 1143 59.5
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 1226.8 1106 60.6
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1214.5 862 72.5
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 1165.6 1146 57.1
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1152.1 932 68.5
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 1139.4 1116 56.5
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1139.4 1143 55.6
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 1106.3 716 73.9
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1101.3 1085 56.5
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1099.3 712 73.7
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1084.7 1105 56.3
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 2.1e-283 979.5 1076 51.9
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 2.6e-278 962.6 1127 50.6
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 3.4e-278 962.2 579 80.0
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 1.3e-277 960.3 1127 48.1
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 4.5e-270 935.3 1146 48.2
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 7.7e-270 934.5 1150 52.1
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 7.2e-260 901.4 1062 48.9
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.2e-243 847.4 824 59.0
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 6.0e-206 722.2 465 75.3
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 1.4e-199 701.0 850 41.8
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 4.3e-196 689.5 502 65.3
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 3.1e-154 550.4 540 61.7
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 7.0e-154 549.3 356 74.2
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 8.0e-126 456.1 630 52.1
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 4.1e-106 390.6 244 79.1
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 1.2e-102 379.0 1092 31.6
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 7.6e-100 369.8 512 51.8
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.1e-93 349.4 214 73.4
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 7.6e-84 316.6 200 71.5
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 7.6e-84 316.6 198 73.2
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 3.0e-80 304.7 346 46.8
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 3.9e-80 304.3 344 57.8
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 1.1e-79 302.8 584 35.8
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.8e-78 298.1 192 79.7
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 5.6e-71 273.9 204 61.8
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 5.3e-61 240.7 152 73.7
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.0e-56 226.5 142 72.5
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 2.3e-56 225.3 157 64.3
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 1.4e-45 189.5 406 39.4
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 6.9e-45 187.2 134 62.7
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 1.6e-33 149.4 231 50.6
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 7.0e-29 134.0 447 26.6
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 4.2e-26 124.8 69 82.6
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 1.4e-24 119.8 266 42.5
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 3.4e-23 115.2 63 87.3
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 1.1e-21 110.2 339 27.1
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 1.1e-21 110.2 96 63.5
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 3.1e-21 108.6 61 83.6
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 1.2e-20 106.7 99 54.5
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 1.3e-19 103.2 284 40.1
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 1.0e-16 93.6 244 28.7
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 9.8e-15 87.0 94 52.1
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 1.3e-14 86.7 206 27.2
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 1.7e-14 86.3 51 74.5
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 2.8e-14 85.5 71 53.5
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 9.1e-13 80.5 44 79.5
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 2.0e-12 79.3 101 40.6
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 2.7e-12 79.0 177 32.2
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 4.5e-12 78.2 177 29.9
Actinidia36003 Actinidia chinensis HOM05D004072 ORTHO05D021063 6.6e-11 74.3 89 57.3
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 6.6e-11 74.3 58 55.2
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 1.5e-10 73.2 143 32.2
CSS0034048 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 2.5e-10 72.4 263 34.6
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 3.3e-10 72.0 162 29.0
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 1.0e-08 67.0 35 82.9
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 3.0e-08 65.5 44 72.7
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 2.6e-07 62.4 121 38.0
Oeu025478.1 Olea europaea HOM05D002278 ORTHO05D007219 5.7e-07 61.2 126 31.7
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 7.5e-07 60.8 42 61.9
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 7.5e-07 60.8 68 45.6
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 1.3e-06 60.1 164 30.5
HanXRQChr13g0412901 Helianthus annuus HOM05D000041 ORTHO05D000452 1.7e-06 59.7 206 25.2
Actinidia04622 Actinidia chinensis HOM05D004072 ORTHO05D019491 8.3e-06 57.4 44 59.1


User provided reference genes

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