Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G085700 Populus trichocarpa HOM05D007550 ORTHO05D009474 3.5e-80 301.6 157 100.0
Potri.011G085501 Populus trichocarpa HOM05D007550 ORTHO05D009474 2.2e-66 255.8 132 100.0
Sabra02G0058600 Salix brachista HOM05D007550 ORTHO05D009474 2.4e-44 182.6 113 85.0
Manes.15G063300 Manihot esculenta HOM05D007550 ORTHO05D009474 2.4e-12 76.3 115 48.7
vmacro09669 Vaccinium macrocarpon HOM05D007550 ORTHO05D009474 2.0e-11 73.2 62 62.9
Thecc.07G022400 Theobroma cacao HOM05D007550 ORTHO05D009474 4.5e-11 72.0 74 54.1
GSVIVG01037778001 Vitis vinifera HOM05D007550 ORTHO05D009474 1.0e-10 70.9 47 74.5
TWI38G1227 Tripterygium wilfordii HOM05D007550 ORTHO05D009474 1.3e-10 70.5 88 48.9
TAR626G1551 Trochodendron aralioides HOM05D007550 ORTHO05D009474 1.3e-10 70.5 71 59.2
Gorai.002G096500 Gossypium raimondii HOM05D007550 ORTHO05D009474 1.7e-10 70.1 84 47.6
QL08p005510 Quercus lobata HOM05D007550 ORTHO05D009474 2.3e-10 69.7 57 70.2
Cfa020230 Carpinus fangiana HOM05D007550 ORTHO05D009474 2.9e-10 69.3 113 44.2
VMungo0647G1572 Vigna mungo HOM05D007550 ORTHO05D009474 3.8e-10 68.9 56 66.1
ClCG10G004590 Citrullus lanatus HOM05D007550 ORTHO05D009474 5.0e-10 68.6 74 59.5
Gohir.D01G073600 Gossypium hirsutum HOM05D007550 ORTHO05D009474 5.0e-10 68.6 84 47.6
CiPaw.12G135900 Carya illinoinensis HOM05D007550 ORTHO05D009474 8.6e-10 67.8 57 64.9
Gohir.A01G087300 Gossypium hirsutum HOM05D007550 ORTHO05D009474 1.1e-09 67.4 82 47.6
Phvul.008G275600 Phaseolus vulgaris HOM05D007550 ORTHO05D009474 1.1e-09 67.4 56 66.1
Duzib213G0332 Durio zibethinus HOM05D007550 ORTHO05D009474 1.5e-09 67.0 83 49.4
A10p12800 Brassica napus HOM05D007550 ORTHO05D009474 1.9e-09 66.6 77 51.9
BraA10t43373Z Brassica rapa HOM05D007550 ORTHO05D009474 1.9e-09 66.6 77 51.9
Nn1g07439 Nelumbo nucifera HOM05D007550 ORTHO05D009474 1.9e-09 66.6 47 76.6
THA.LOC104817699 Tarenaya hassleriana HOM05D007550 ORTHO05D009474 1.9e-09 66.6 71 52.1
Psat2g008720 Pisum sativum HOM05D007550 ORTHO05D009474 2.5e-09 66.2 90 46.7
BolC9t57498H Brassica oleracea HOM05D007550 ORTHO05D009474 3.3e-09 65.9 77 51.9
CARHR268880 Cardamine hirsuta HOM05D007550 ORTHO05D009474 3.3e-09 65.9 90 41.1
C09p46340 Brassica napus HOM05D007550 ORTHO05D009474 4.3e-09 65.5 77 51.9
MELO3C014132.2 Cucumis melo HOM05D007550 ORTHO05D009474 4.3e-09 65.5 62 61.3
Dinv10312 Davidia involucrata HOM05D007550 ORTHO05D009474 4.3e-09 65.5 87 48.3
Glyma.14G015900 Glycine max HOM05D007550 ORTHO05D009474 4.3e-09 65.5 113 41.6
Sp6g17490 Schrenkiella parvula HOM05D007550 ORTHO05D009474 5.6e-09 65.1 81 46.9
Sed0001315 Sechium edule HOM05D007550 ORTHO05D009474 5.6e-09 65.1 64 59.4
PGR031G0516 Punica granatum HOM05D007550 ORTHO05D009474 7.3e-09 64.7 49 71.4
Atru.chr2.3607 Acer truncatum HOM05D007550 ORTHO05D009474 1.2e-08 63.9 46 76.1
FAN25G3253 Fragaria x ananassa HOM05D007550 ORTHO05D009474 1.6e-08 63.5 54 63.0
Migut.M01677 Erythranthe guttata HOM05D007550 ORTHO05D009474 2.1e-08 63.2 77 49.4
Medtr5g094600 Medicago truncatula HOM05D007550 ORTHO05D009474 2.1e-08 63.2 51 58.8
FAN16G0277 Fragaria x ananassa HOM05D007550 ORTHO05D009474 2.8e-08 62.8 56 57.1
MD11G1204800 Malus domestica HOM05D007550 ORTHO05D009474 2.8e-08 62.8 48 68.8
Aa31LG3G11520 Aethionema arabicum HOM05D007550 ORTHO05D009474 3.6e-08 62.4 79 45.6
Ciclev10009869m.g Citrus clementina HOM05D007550 ORTHO05D009474 3.6e-08 62.4 45 75.6
Sc18g0004240 Simmondsia chinensis HOM05D007550 ORTHO05D009474 3.6e-08 62.4 57 57.9
AT5G55570 Arabidopsis thaliana HOM05D007550 ORTHO05D009474 4.7e-08 62.0 58 55.2
Carub.0008s1594 Capsella rubella HOM05D007550 ORTHO05D009474 4.7e-08 62.0 80 47.5
CAN.G410.43 Capsicum annuum HOM05D007550 ORTHO05D009474 4.7e-08 62.0 54 53.7
CDE06G2160 Ceratophyllum demersum HOM05D007550 ORTHO05D009474 4.7e-08 62.0 48 66.7
FAN25G1734 Fragaria x ananassa HOM05D007550 ORTHO05D009474 4.7e-08 62.0 54 61.1
LjContig00272g0022958 Lotus japonicus HOM05D007550 ORTHO05D009474 4.7e-08 62.0 54 59.3
Aqoxy4G02213 Aquilegia oxysepala HOM05D007550 ORTHO05D009474 6.1e-08 61.6 65 60.0
CsaV3_3G004390 Cucumis sativus L. HOM05D007550 ORTHO05D009474 6.1e-08 61.6 74 52.7
Actinidia39070 Actinidia chinensis HOM05D007550 ORTHO05D009474 1.4e-07 60.5 55 61.8
RcHm_v2.0_Chr5g0042631 Rosa chinensis HOM05D007550 ORTHO05D009474 1.4e-07 60.5 58 60.3
CANSAT56G0742 Cannabis sativa HOM05D007550 ORTHO05D009474 1.8e-07 60.1 47 68.1
FvH4_3g24050 Fragaria vesca HOM05D007550 ORTHO05D009474 1.8e-07 60.1 54 61.1
MBI16_g11565_MAGBIO Magnolia biondii HOM05D007550 ORTHO05D009474 1.8e-07 60.1 45 71.1
FAN11G2859 Fragaria x ananassa HOM05D007550 ORTHO05D009474 3.0e-07 59.3 58 58.6
FAN21G0016 Fragaria x ananassa HOM05D007550 ORTHO05D009474 3.0e-07 59.3 58 58.6
Thhalv10014968m.g Eutrema salsugineum HOM05D007550 ORTHO05D009474 4.0e-07 58.9 82 42.7
Peaxi162Scf00955g00219 Petunia axillaris HOM05D007550 ORTHO05D009474 4.0e-07 58.9 49 61.2
Prupe.4G233900 Prunus persica HOM05D007550 ORTHO05D009474 4.0e-07 58.9 54 57.4
Cc05_g14670 Coffea canephora HOM05D007550 ORTHO05D009474 5.2e-07 58.5 89 43.8
Hma1.2p1_0036F.1_g022720 Hydrangea macrophylla HOM05D007550 ORTHO05D009474 5.2e-07 58.5 122 36.1
Oeu005969.1 Olea europaea HOM05D007550 ORTHO05D009474 5.2e-07 58.5 44 65.9
PSO541G5298 Papaver somniferum HOM05D007550 ORTHO05D009474 5.2e-07 58.5 65 52.3
PSO675G9283 Papaver somniferum HOM05D007550 ORTHO05D009474 5.2e-07 58.5 65 52.3
MSTRG.6984 Avicennia marina HOM05D007550 ORTHO05D009474 1.2e-06 57.4 65 47.7
Lalb_Chr17g0348791 Lupinus albus HOM05D007550 ORTHO05D009474 1.2e-06 57.4 47 66.0
AL8G31140 Arabidopsis lyrata HOM05D007550 ORTHO05D009474 1.5e-06 57.0 81 44.4
Ah.06g181190 Amaranthus hybridus HOM05D000063 ORTHO05D000906 2.0e-06 56.6 54 55.6
Lj1A885G31 Lonicera japonica HOM05D007550 ORTHO05D009474 2.0e-06 56.6 83 44.6
Hund01919 Selenicereus undatus HOM05D007550 ORTHO05D009474 2.0e-06 56.6 62 54.8
Solyc12g015630.2 Solanum lycopersicum HOM05D007550 ORTHO05D009474 2.0e-06 56.6 34 73.5
PGSC0003DMG400029800 Solanum tuberosum HOM05D007550 ORTHO05D009474 2.0e-06 56.6 34 73.5
Hma1.2p1_0036F.1_g022730 Hydrangea macrophylla HOM05D007550 ORTHO05D009474 2.6e-06 56.2 38 71.1
Zm00001eb370450 Zea mays HOM05D007550 ORTHO05D009474 2.6e-06 56.2 61 54.1
Nitab4.5_0001750g0040 Nicotiana tabacum HOM05D007550 ORTHO05D009474 3.4e-06 55.8 56 53.6
HPP92_028367 Vanilla planifolia HOM05D007550 ORTHO05D009474 3.4e-06 55.8 35 71.4
Pp3c18_5680 Physcomitrium patens HOM05D007550 ORTHO05D009474 4.4e-06 55.5 54 51.9
unitig_899.g15275 Utricularia gibba HOM05D007550 ORTHO05D009474 4.4e-06 55.5 44 59.1
SGA_v2.0_scaffold168G38530 Striga asiatica HOM05D007550 ORTHO05D009474 5.8e-06 55.1 53 52.8
ECA240G1453 Erigeron canadensis HOM05D007550 ORTHO05D009474 7.5e-06 54.7 120 31.7
Os01g0762300 Oryza sativa ssp. japonica HOM05D007550 ORTHO05D009474 7.5e-06 54.7 79 40.5
COL.COLO4_09786 Corchorus olitorius HOM05D007550 ORTHO05D009474 9.8e-06 54.3 93 41.9


User provided reference genes

Program Settings