Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G085501 Populus trichocarpa HOM05D007550 ORTHO05D009474 5.2e-145 517.7 260 100.0
Potri.011G085700 Populus trichocarpa HOM05D007550 ORTHO05D009474 2.8e-66 256.1 132 100.0
Sabra02G0058600 Salix brachista HOM05D007550 ORTHO05D009474 1.0e-60 237.7 141 85.8
PGR031G0516 Punica granatum HOM05D007550 ORTHO05D009474 9.5e-30 134.8 122 59.8
Manes.15G063300 Manihot esculenta HOM05D007550 ORTHO05D009474 2.8e-29 133.3 143 55.9
ClCG10G004590 Citrullus lanatus HOM05D007550 ORTHO05D009474 1.5e-27 127.5 107 64.5
Thecc.07G022400 Theobroma cacao HOM05D007550 ORTHO05D009474 1.5e-27 127.5 102 61.8
QL08p005510 Quercus lobata HOM05D007550 ORTHO05D009474 3.4e-27 126.3 85 75.3
GSVIVG01037778001 Vitis vinifera HOM05D007550 ORTHO05D009474 3.4e-27 126.3 75 78.7
TAR626G1551 Trochodendron aralioides HOM05D007550 ORTHO05D009474 4.4e-27 125.9 99 66.7
Nn1g07439 Nelumbo nucifera HOM05D007550 ORTHO05D009474 1.7e-26 124.0 120 59.2
Cfa020230 Carpinus fangiana HOM05D007550 ORTHO05D009474 2.2e-26 123.6 143 51.0
TWI38G1227 Tripterygium wilfordii HOM05D007550 ORTHO05D009474 1.1e-25 121.3 117 57.3
VMungo0647G1572 Vigna mungo HOM05D007550 ORTHO05D009474 1.1e-25 121.3 84 70.2
Dinv10312 Davidia involucrata HOM05D007550 ORTHO05D009474 1.4e-25 120.9 115 57.4
CiPaw.12G135900 Carya illinoinensis HOM05D007550 ORTHO05D009474 3.1e-25 119.8 86 70.9
Ciclev10009869m.g Citrus clementina HOM05D007550 ORTHO05D009474 7.0e-25 118.6 78 74.4
A10p12800 Brassica napus HOM05D007550 ORTHO05D009474 9.2e-25 118.2 105 58.1
BraA10t43373Z Brassica rapa HOM05D007550 ORTHO05D009474 9.2e-25 118.2 105 58.1
Actinidia39070 Actinidia chinensis HOM05D007550 ORTHO05D009474 1.2e-24 117.9 83 68.7
MELO3C014132.2 Cucumis melo HOM05D007550 ORTHO05D009474 1.2e-24 117.9 90 66.7
Duzib213G0332 Durio zibethinus HOM05D007550 ORTHO05D009474 1.6e-24 117.5 111 55.9
Phvul.008G275600 Phaseolus vulgaris HOM05D007550 ORTHO05D009474 1.6e-24 117.5 83 69.9
Atru.chr2.3607 Acer truncatum HOM05D007550 ORTHO05D009474 2.0e-24 117.1 74 75.7
Medtr5g094600 Medicago truncatula HOM05D007550 ORTHO05D009474 3.5e-24 116.3 79 65.8
Psat2g008720 Pisum sativum HOM05D007550 ORTHO05D009474 5.9e-24 115.5 118 52.5
Gorai.002G096500 Gossypium raimondii HOM05D007550 ORTHO05D009474 1.0e-23 114.8 112 53.6
BolC9t57498H Brassica oleracea HOM05D007550 ORTHO05D009474 1.3e-23 114.4 105 57.1
Sc18g0004240 Simmondsia chinensis HOM05D007550 ORTHO05D009474 1.3e-23 114.4 86 66.3
Aqoxy4G02213 Aquilegia oxysepala HOM05D007550 ORTHO05D009474 2.3e-23 113.6 133 53.4
C09p46340 Brassica napus HOM05D007550 ORTHO05D009474 2.3e-23 113.6 105 57.1
CARHR268880 Cardamine hirsuta HOM05D007550 ORTHO05D009474 2.9e-23 113.2 118 48.3
FAN25G3253 Fragaria x ananassa HOM05D007550 ORTHO05D009474 2.9e-23 113.2 97 58.8
Gohir.D01G073600 Gossypium hirsutum HOM05D007550 ORTHO05D009474 2.9e-23 113.2 112 53.6
Glyma.14G015900 Glycine max HOM05D007550 ORTHO05D009474 5.0e-23 112.5 142 48.6
Sed0001315 Sechium edule HOM05D007550 ORTHO05D009474 5.0e-23 112.5 92 63.0
AT5G55570 Arabidopsis thaliana HOM05D007550 ORTHO05D009474 1.1e-22 111.3 86 61.6
CDE06G2160 Ceratophyllum demersum HOM05D007550 ORTHO05D009474 1.1e-22 111.3 74 70.3
LjContig00272g0022958 Lotus japonicus HOM05D007550 ORTHO05D009474 1.1e-22 111.3 84 65.5
FAN25G1734 Fragaria x ananassa HOM05D007550 ORTHO05D009474 1.5e-22 110.9 95 57.9
THA.LOC104817699 Tarenaya hassleriana HOM05D007550 ORTHO05D009474 1.5e-22 110.9 99 56.6
Aa31LG3G11520 Aethionema arabicum HOM05D007550 ORTHO05D009474 1.9e-22 110.5 107 51.4
Thhalv10014968m.g Eutrema salsugineum HOM05D007550 ORTHO05D009474 1.9e-22 110.5 110 51.8
Oeu005969.1 Olea europaea HOM05D007550 ORTHO05D009474 1.9e-22 110.5 151 45.7
CsaV3_3G004390 Cucumis sativus L. HOM05D007550 ORTHO05D009474 2.5e-22 110.2 102 58.8
FAN16G0277 Fragaria x ananassa HOM05D007550 ORTHO05D009474 4.3e-22 109.4 82 62.2
ATR1149G080 Amborella trichopoda HOM05D007550 ORTHO05D009474 5.6e-22 109.0 69 72.5
Hma1.2p1_0036F.1_g022720 Hydrangea macrophylla HOM05D007550 ORTHO05D009474 5.6e-22 109.0 151 45.7
RcHm_v2.0_Chr5g0042631 Rosa chinensis HOM05D007550 ORTHO05D009474 5.6e-22 109.0 86 64.0
FvH4_3g24050 Fragaria vesca HOM05D007550 ORTHO05D009474 7.3e-22 108.6 82 64.6
Gohir.A01G087300 Gossypium hirsutum HOM05D007550 ORTHO05D009474 7.3e-22 108.6 110 52.7
Carub.0008s1594 Capsella rubella HOM05D007550 ORTHO05D009474 9.5e-22 108.2 112 50.9
FAN11G2859 Fragaria x ananassa HOM05D007550 ORTHO05D009474 1.2e-21 107.8 86 62.8
FAN21G0016 Fragaria x ananassa HOM05D007550 ORTHO05D009474 1.2e-21 107.8 86 62.8
MD11G1204800 Malus domestica HOM05D007550 ORTHO05D009474 1.6e-21 107.5 76 67.1
Hma1.2p1_0036F.1_g022730 Hydrangea macrophylla HOM05D007550 ORTHO05D009474 2.8e-21 106.7 80 70.0
Migut.M01677 Erythranthe guttata HOM05D007550 ORTHO05D009474 3.6e-21 106.3 106 54.7
AL8G31140 Arabidopsis lyrata HOM05D007550 ORTHO05D009474 6.1e-21 105.5 109 51.4
Lj1A885G31 Lonicera japonica HOM05D007550 ORTHO05D009474 8.0e-21 105.1 111 51.4
Lalb_Chr17g0348791 Lupinus albus HOM05D007550 ORTHO05D009474 8.0e-21 105.1 76 69.7
Peaxi162Scf00955g00219 Petunia axillaris HOM05D007550 ORTHO05D009474 1.0e-20 104.8 77 63.6
CAN.G410.43 Capsicum annuum HOM05D007550 ORTHO05D009474 1.4e-20 104.4 82 57.3
Solyc12g015630.2 Solanum lycopersicum HOM05D007550 ORTHO05D009474 3.0e-20 103.2 62 71.0
PGSC0003DMG400029800 Solanum tuberosum HOM05D007550 ORTHO05D009474 3.0e-20 103.2 62 71.0
COL.COLO4_09786 Corchorus olitorius HOM05D007550 ORTHO05D009474 2.0e-19 100.5 121 48.8
PSO541G5298 Papaver somniferum HOM05D007550 ORTHO05D009474 2.0e-19 100.5 92 56.5
PSO675G9283 Papaver somniferum HOM05D007550 ORTHO05D009474 2.0e-19 100.5 92 56.5
MSTRG.6984 Avicennia marina HOM05D007550 ORTHO05D009474 2.6e-19 100.1 94 55.3
ECA240G1453 Erigeron canadensis HOM05D007550 ORTHO05D009474 4.4e-19 99.4 148 37.8
unitig_899.g15275 Utricularia gibba HOM05D007550 ORTHO05D009474 5.8e-19 99.0 72 65.3
Os01g0762300 Oryza sativa ssp. japonica HOM05D007550 ORTHO05D009474 9.8e-19 98.2 107 45.8
Cc05_g14670 Coffea canephora HOM05D007550 ORTHO05D009474 1.3e-18 97.8 118 49.2
Zm00001eb370450 Zea mays HOM05D007550 ORTHO05D009474 1.3e-18 97.8 89 57.3
Nitab4.5_0001750g0040 Nicotiana tabacum HOM05D007550 ORTHO05D009474 1.7e-18 97.4 85 57.6
DCAR_022604 Daucus carota HOM05D007550 ORTHO05D009474 2.2e-18 97.1 108 50.9
Sopen12g007530 Solanum pennellii HOM05D007550 ORTHO05D009474 2.2e-18 97.1 62 69.4
HPP92_028367 Vanilla planifolia HOM05D007550 ORTHO05D009474 3.7e-18 96.3 63 66.7
HanXRQChr13g0408011 Helianthus annuus HOM05D007550 ORTHO05D009474 8.3e-18 95.1 56 71.4
Nitab4.5_0000163g0330 Nicotiana tabacum HOM05D007550 ORTHO05D009474 1.4e-17 94.4 57 73.7
CANSAT56G0742 Cannabis sativa HOM05D007550 ORTHO05D009474 1.8e-17 94.0 68 69.1
arahy.Tifrunner.gnm1.ann1.S0MYI4 Arachis hypogaea HOM05D007550 ORTHO05D009474 1.6e-16 90.9 79 57.0
Mapoly0128s0022 Marchantia polymorpha HOM05D007550 ORTHO05D009474 2.0e-16 90.5 85 57.6
Pp3c18_5680 Physcomitrium patens HOM05D007550 ORTHO05D009474 2.0e-16 90.5 81 53.1
arahy.Tifrunner.gnm1.ann1.R7ZLS4 Arachis hypogaea HOM05D007550 ORTHO05D009474 2.7e-16 90.1 79 57.0
AagrBONN_evm.TU.Sc2ySwM_344.2781 Anthoceros agrestis HOM05D007550 ORTHO05D009474 2.3e-15 87.0 66 59.1
BcaB08g35917 Brassica carinata HOM05D007550 ORTHO05D009474 2.3e-15 87.0 105 45.7
SGA_v2.0_scaffold168G38530 Striga asiatica HOM05D007550 ORTHO05D009474 3.0e-15 86.7 75 56.0
CBR_g30607 Chara braunii HOM05D007550 ORTHO05D009474 3.3e-14 83.2 56 62.5
vmacro09669 Vaccinium macrocarpon HOM05D007550 ORTHO05D009474 4.0e-12 76.3 63 63.5
EL10Ac4g07615 Beta vulgaris HOM05D007550 ORTHO05D009474 1.5e-11 74.3 111 39.6
Sp6g17490 Schrenkiella parvula HOM05D007550 ORTHO05D009474 4.1e-09 66.2 82 46.3
Cre03.g145567 Chlamydomonas reinhardtii HOM05D007550 ORTHO05D009474 5.4e-09 65.9 65 50.8
MBI16_g11563_MAGBIO Magnolia biondii HOM05D007550 ORTHO05D009474 1.0e-07 61.6 32 78.1
MBI16_g11565_MAGBIO Magnolia biondii HOM05D007550 ORTHO05D009474 2.3e-07 60.5 45 71.1
PRCOL_00004706 Prasinoderma coloniale HOM05D007550 ORTHO05D009474 5.0e-07 59.3 111 37.8
Ah.06g181190 Amaranthus hybridus HOM05D000063 ORTHO05D000906 1.5e-06 57.8 64 50.0
Prupe.4G233900 Prunus persica HOM05D007550 ORTHO05D009474 2.5e-06 57.0 48 60.4
Hund01919 Selenicereus undatus HOM05D007550 ORTHO05D009474 2.5e-06 57.0 62 54.8


User provided reference genes

Program Settings