Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 3.1e-122 441.8 222 100.0
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 1.2e-110 403.3 222 91.0
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 1.2e-110 403.3 222 91.0
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 1.1e-92 343.6 225 76.9
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 9.7e-92 340.5 222 77.9
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 2.2e-91 339.3 223 75.8
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 2.8e-91 339.0 225 75.6
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 3.7e-91 338.6 223 76.7
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 3.7e-91 338.6 222 75.2
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 6.9e-90 334.3 223 74.9
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 2.6e-89 332.4 223 73.1
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 2.6e-89 332.4 224 74.1
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 3.4e-89 332.0 220 74.5
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 7.7e-89 330.9 222 73.4
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 5.0e-88 328.2 220 74.1
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 5.0e-88 328.2 226 73.9
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 6.5e-88 327.8 220 74.1
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 6.5e-88 327.8 223 73.5
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 1.4e-87 326.6 222 73.9
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 1.9e-87 326.2 222 72.1
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 4.2e-87 325.1 222 71.2
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 7.2e-87 324.3 251 67.7
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 7.2e-87 324.3 221 72.4
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 9.4e-87 323.9 223 74.9
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.1e-86 322.8 220 72.3
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 2.7e-86 322.4 220 71.8
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 6.1e-86 321.2 223 69.5
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 6.1e-86 321.2 220 71.8
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 6.1e-86 321.2 222 71.2
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 6.1e-86 321.2 226 72.1
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 6.1e-86 321.2 220 72.7
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 7.9e-86 320.9 217 72.8
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 7.9e-86 320.9 222 72.1
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 1.4e-85 320.1 217 74.2
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 1.8e-85 319.7 226 69.5
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 1.8e-85 319.7 222 73.0
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 2.3e-85 319.3 222 69.8
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 3.0e-85 318.9 221 70.1
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 6.7e-85 317.8 220 71.4
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 8.8e-85 317.4 224 73.2
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 1.1e-84 317.0 222 69.8
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 1.1e-84 317.0 222 71.6
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 3.3e-84 315.5 225 69.8
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 4.4e-84 315.1 222 68.9
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 4.4e-84 315.1 209 75.6
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 5.7e-84 314.7 222 68.9
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 5.7e-84 314.7 219 69.9
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 9.7e-84 313.9 221 70.6
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 9.7e-84 313.9 220 70.0
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 1.3e-83 313.5 222 68.9
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 1.7e-83 313.2 226 70.8
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 1.7e-83 313.2 222 68.5
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 1.7e-83 313.2 222 69.4
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 2.2e-83 312.8 222 69.4
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 2.8e-83 312.4 221 67.4
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 2.8e-83 312.4 219 70.3
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 2.8e-83 312.4 223 70.4
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 3.7e-83 312.0 229 69.4
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 3.7e-83 312.0 217 70.5
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 4.8e-83 311.6 222 68.0
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 4.8e-83 311.6 227 68.7
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 4.8e-83 311.6 219 68.5
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 6.3e-83 311.2 221 67.4
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 6.3e-83 311.2 221 68.3
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 8.2e-83 310.8 220 70.9
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 8.2e-83 310.8 222 71.2
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 1.1e-82 310.5 219 67.6
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 1.8e-82 309.7 222 72.1
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 3.1e-82 308.9 219 68.9
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 7.0e-82 307.8 219 68.0
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 1.6e-81 306.6 221 67.0
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 1.6e-81 306.6 220 68.2
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 1.6e-81 306.6 223 68.2
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 3.5e-81 305.4 222 69.4
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 3.5e-81 305.4 235 65.5
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 3.5e-81 305.4 220 67.3
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 4.5e-81 305.1 221 68.8
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 4.5e-81 305.1 221 66.1
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 5.9e-81 304.7 218 69.3
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 7.7e-81 304.3 220 66.8
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 7.7e-81 304.3 220 66.8
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 1.0e-80 303.9 221 65.6
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 1.7e-80 303.1 221 66.5
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 1.7e-80 303.1 221 66.5
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 6.5e-80 301.2 221 66.5
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 1.1e-79 300.4 220 66.4
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 1.5e-79 300.1 231 63.6
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 1.5e-79 300.1 221 67.4
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 3.2e-79 298.9 219 67.6
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 1.2e-78 297.0 248 62.9
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 1.6e-78 296.6 219 63.5
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 2.1e-78 296.2 221 64.3
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 2.3e-77 292.7 227 64.3
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 3.0e-77 292.4 264 61.0
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 8.8e-77 290.8 265 57.4
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 8.8e-77 290.8 225 66.2
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 6.3e-75 284.6 225 64.4
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 1.4e-74 283.5 225 64.9
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 2.4e-74 282.7 225 64.4
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 3.1e-74 282.3 221 63.3
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 1.6e-73 280.0 164 78.7
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 2.7e-73 279.3 161 80.7
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 1.3e-72 276.9 190 70.0
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 5.0e-72 275.0 212 67.5
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 3.2e-71 272.3 224 59.4
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 4.2e-71 271.9 161 80.1
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 5.5e-71 271.6 254 56.7
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 5.5e-71 271.6 222 58.6
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 4.7e-70 268.5 217 64.1
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 3.0e-69 265.8 220 59.5
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 1.5e-68 263.5 222 60.8
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 2.8e-67 259.2 188 68.6
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 9.1e-66 254.2 212 63.2
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 3.6e-62 242.3 191 67.0
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 4.9e-59 231.9 225 55.6
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 4.9e-59 231.9 233 51.1
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 3.1e-58 229.2 217 51.6
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 3.3e-55 219.2 132 72.0
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 7.3e-55 218.0 123 80.5
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 1.2e-52 210.7 225 55.6
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 2.6e-52 209.5 116 82.8
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 4.4e-52 208.8 246 48.0
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 2.9e-51 206.1 211 50.7
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 3.6e-46 189.1 237 46.4
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 3.0e-40 169.5 251 39.4
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 3.6e-38 162.5 176 51.1
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 1.4e-37 160.6 100 74.0
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 2.4e-34 149.8 182 47.3
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 4.4e-28 129.0 251 37.5
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 6.2e-14 82.0 43 86.0
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 9.9e-12 74.7 88 51.1
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 1.2e-09 67.8 38 78.9
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 1.2e-09 67.8 38 76.3
SMO364G0864 Selaginella moellendorffii HOM05D005618 ORTHO05D374196 3.5e-09 66.2 209 28.2
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.0e-08 64.7 40 70.0
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.1e-06 57.0 28 89.3
Cpa.g.sc246.8 Carica papaya HOM05D005618 ORTHO05D118306 2.8e-06 56.6 46 65.2


User provided reference genes

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