Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G084150 Populus trichocarpa HOM05D001750 ORTHO05D001825 9.1e-122 440.3 226 100.0
Potri.001G342933 Populus trichocarpa HOM05D001750 ORTHO05D001825 5.4e-114 414.5 244 89.3
PGR111G0046 Punica granatum HOM05D001750 ORTHO05D001825 6.6e-96 354.4 244 75.4
Gohir.A02G134105 Gossypium hirsutum HOM05D001750 ORTHO05D001825 3.1e-93 345.5 244 74.2
Gohir.A04G039195 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.2e-92 343.6 244 73.8
Gohir.1Z049581 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.0e-92 342.8 244 73.8
FvH4_c3g00021 Fragaria vesca HOM05D001750 ORTHO05D001825 3.4e-92 342.0 244 72.5
Sed0000095 Sechium edule HOM05D001750 ORTHO05D001825 4.4e-92 341.7 244 72.5
EL10As15g24136 Beta vulgaris HOM05D001750 ORTHO05D001825 5.8e-92 341.3 238 74.8
CAN.G1045.16 Capsicum annuum HOM05D001750 ORTHO05D001825 9.9e-92 340.5 244 73.0
Nn064s42216 Nelumbo nucifera HOM05D001750 ORTHO05D001825 9.9e-92 340.5 244 74.2
RcHm_v2.0_CPg0502851 Rosa chinensis HOM05D001750 ORTHO05D001825 9.9e-92 340.5 244 73.0
CAN.G134.7 Capsicum annuum HOM05D001750 ORTHO05D001825 1.3e-91 340.1 244 73.4
CAN.G413.7 Capsicum annuum HOM05D001750 ORTHO05D001825 1.3e-91 340.1 244 73.4
CAN.G1431.3 Capsicum annuum HOM05D001750 ORTHO05D001825 2.2e-91 339.3 244 73.0
HanXRQChr02g0059681 Helianthus annuus HOM05D001750 ORTHO05D001825 2.9e-91 339.0 244 73.4
HanXRQChr05g0152401 Helianthus annuus HOM05D001750 ORTHO05D001825 2.9e-91 339.0 244 73.4
HanXRQChr06g0182971 Helianthus annuus HOM05D001750 ORTHO05D001825 2.9e-91 339.0 244 73.4
HanXRQChr09g0258551 Helianthus annuus HOM05D001750 ORTHO05D001825 2.9e-91 339.0 244 73.4
HanXRQChr11g0323711 Helianthus annuus HOM05D001750 ORTHO05D001825 2.9e-91 339.0 244 73.4
HanXRQCPg0580391 Helianthus annuus HOM05D001750 ORTHO05D001825 2.9e-91 339.0 244 73.4
Lj2P1238T72 Lonicera japonica HOM05D001750 ORTHO05D001825 3.7e-91 338.6 244 72.1
DCAR_032533 Daucus carota HOM05D001750 ORTHO05D001825 3.2e-90 335.5 244 73.0
SalBow1G5472 Salvia bowleyana HOM05D001750 ORTHO05D001825 3.2e-90 335.5 244 72.1
CAN.G1526.5 Capsicum annuum HOM05D001750 ORTHO05D001825 5.4e-90 334.7 244 72.5
Medtr4g006150 Medicago truncatula HOM05D001750 ORTHO05D001825 9.2e-90 334.0 244 71.3
Medtr4g051300 Medicago truncatula HOM05D001750 ORTHO05D001825 9.2e-90 334.0 244 71.3
Medtr7g021740 Medicago truncatula HOM05D001750 ORTHO05D001825 9.2e-90 334.0 244 71.3
ATCG01010 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 4.3e-87 325.1 244 70.9
BraSC103t45424Z Brassica rapa HOM05D001750 ORTHO05D001825 1.6e-86 323.2 244 69.7
BraSC138t45539Z Brassica rapa HOM05D001750 ORTHO05D001825 1.6e-86 323.2 244 69.7
BraSC143t45665Z Brassica rapa HOM05D001750 ORTHO05D001825 1.6e-86 323.2 244 69.7
BraSC25t45905Z Brassica rapa HOM05D001750 ORTHO05D001825 1.6e-86 323.2 244 69.7
BraSC59t46546Z Brassica rapa HOM05D001750 ORTHO05D001825 1.6e-86 323.2 244 69.7
LjContig00318g0010147 Lotus japonicus HOM05D001750 ORTHO05D001825 6.2e-86 321.2 244 68.9
LjContig00319g0009462 Lotus japonicus HOM05D001750 ORTHO05D001825 6.2e-86 321.2 244 68.9
Lalb_Chr03g0039401 Lupinus albus HOM05D001750 ORTHO05D001825 8.1e-86 320.9 244 69.3
BolSC29t60501H Brassica oleracea HOM05D001750 ORTHO05D001825 1.8e-85 319.7 244 69.3
BolSC37t60789H Brassica oleracea HOM05D001750 ORTHO05D001825 1.8e-85 319.7 244 69.3
BolSC44t60818H Brassica oleracea HOM05D001750 ORTHO05D001825 1.8e-85 319.7 244 69.3
BolSC45t60914H Brassica oleracea HOM05D001750 ORTHO05D001825 1.8e-85 319.7 244 69.3
BolSC46t60963H Brassica oleracea HOM05D001750 ORTHO05D001825 1.8e-85 319.7 244 69.3
arahy.Tifrunner.gnm1.ann1.B6WU7N Arachis hypogaea HOM05D001750 ORTHO05D001825 2.6e-84 315.8 243 70.4
PSO548G0117 Papaver somniferum HOM05D001750 ORTHO05D001825 4.4e-84 315.1 244 70.5
arahy.Tifrunner.gnm1.ann1.5P7K6N Arachis hypogaea HOM05D001750 ORTHO05D001825 1.1e-82 310.5 243 69.5
MELO3C027417.2 Cucumis melo HOM05D001750 ORTHO05D001825 4.2e-82 308.5 232 68.5
AL7G50350 Arabidopsis lyrata HOM05D001750 ORTHO05D001825 6.2e-78 294.7 216 70.8
HanXRQChr08g0212841 Helianthus annuus HOM05D001750 ORTHO05D001825 2.4e-77 292.7 244 66.0
Gohir.1Z049579 Gossypium hirsutum HOM05D001750 ORTHO05D001825 7.6e-76 287.7 182 77.5
Solyc01g017090.2 Solanum lycopersicum HOM05D001750 ORTHO05D001825 7.3e-71 271.2 182 73.1
HanXRQChr00c0289g0573101 Helianthus annuus HOM05D001750 ORTHO05D001825 4.8e-70 268.5 244 61.9
Gorai.013G022800 Gossypium raimondii HOM05D001750 ORTHO05D001825 4.5e-68 261.9 184 72.3
HanXRQChr01g0020101 Helianthus annuus HOM05D001750 ORTHO05D001825 1.2e-57 227.3 206 62.6
Solyc03g013620.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 4.3e-55 218.8 150 74.7
EL10As28g24255 Beta vulgaris HOM05D001750 ORTHO05D001825 8.2e-54 214.5 216 58.3
BolC6t36206H Brassica oleracea HOM05D001750 ORTHO05D001825 7.6e-52 208.0 156 70.5
Gohir.A04G039180 Gossypium hirsutum HOM05D001750 ORTHO05D001825 8.4e-51 204.5 147 74.1
Gohir.A12G229700 Gossypium hirsutum HOM05D001750 ORTHO05D001825 8.4e-51 204.5 147 74.1
Nitab4.5_0007400g0030 Nicotiana tabacum HOM05D001750 ORTHO05D001825 8.4e-51 204.5 225 56.9
PGSC0003DMG400020529 Solanum tuberosum HOM05D000729 ORTHO05D001063 6.1e-49 198.4 164 67.7
Lalb_Chr16g0388561 Lupinus albus HOM05D001750 ORTHO05D001825 4.8e-46 188.7 193 57.5
Hma1.2p1_0472F.1_g159730 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 1.4e-45 187.2 142 68.3
BolSC49t61138H Brassica oleracea HOM05D001750 ORTHO05D001825 1.3e-43 180.6 130 71.5
Gorai.006G035300 Gossypium raimondii HOM05D001750 ORTHO05D001825 1.3e-43 180.6 128 72.7
Hma1.2p1_0066F.1_g036370 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 8.5e-43 177.9 134 68.7
Lalb_Chr07g0191711 Lupinus albus HOM05D001750 ORTHO05D001825 1.9e-42 176.8 124 71.8
Eucgr.B00850 Eucalyptus grandis HOM05D001750 ORTHO05D001825 7.2e-42 174.9 182 54.4
Gohir.D13G020450 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.1e-41 173.3 119 73.1
Gorai.005G127100 Gossypium raimondii HOM05D001750 ORTHO05D001825 4.6e-41 172.2 130 72.3
Solyc11g021190.2 Solanum lycopersicum HOM05D001750 ORTHO05D001825 4.6e-41 172.2 111 77.5
Thhalv10024000m.g Eutrema salsugineum HOM05D001750 ORTHO05D001825 2.3e-40 169.9 177 55.4
Medtr0002s0200 Medicago truncatula HOM05D001750 ORTHO05D001825 7.4e-39 164.9 112 75.0
Gohir.1Z049402 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.7e-33 146.4 110 70.0
PGSC0003DMG400029008 Solanum tuberosum HOM05D001750 ORTHO05D001825 4.7e-33 145.6 110 70.0
HanXRQChr17g0557801 Helianthus annuus HOM05D001750 ORTHO05D001825 2.3e-32 143.3 205 46.3
Manes.18G138200 Manihot esculenta HOM05D001750 ORTHO05D001825 1.7e-30 137.1 182 48.4
Psat0s3763g0040 Pisum sativum HOM05D001750 ORTHO05D001825 1.6e-28 130.6 68 86.8
Oeu010691.1 Olea europaea HOM05D001750 ORTHO05D001825 5.9e-28 128.6 109 65.1
SMO086G0048 Selaginella moellendorffii HOM05D001750 ORTHO05D001825 2.9e-27 126.3 240 37.9
Gohir.D02G112150 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.7e-25 119.8 174 44.8
Solyc02g032320.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.8e-24 117.1 69 81.2
Solyc11g021195.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 3.0e-24 116.3 104 61.5
HanXRQChr00c0718g0577001 Helianthus annuus HOM05D001750 ORTHO05D001825 1.5e-23 114.0 107 59.8
Gohir.D02G151844 Gossypium hirsutum HOM05D001750 ORTHO05D001825 4.4e-23 112.5 243 34.2
Gorai.005G170400 Gossypium raimondii HOM05D001750 ORTHO05D001825 2.8e-22 109.8 243 33.7
Gorai.008G266700 Gossypium raimondii HOM05D001750 ORTHO05D001825 3.7e-22 109.4 91 67.0
Lalb_Chr07g0191701 Lupinus albus HOM05D001750 ORTHO05D001825 5.3e-21 105.5 87 63.2
Eucgr.G01321 Eucalyptus grandis HOM05D000445 ORTHO05D000314 1.2e-20 104.4 72 72.2
BolC6t36205H Brassica oleracea HOM05D001750 ORTHO05D001825 2.7e-20 103.2 89 64.0
Ciclev10013962m.g Citrus clementina HOM05D001750 ORTHO05D001825 1.7e-19 100.5 89 60.7
Ciclev10013986m.g Citrus clementina HOM05D001750 ORTHO05D001825 1.7e-19 100.5 89 60.7
Ciclev10014000m.g Citrus clementina HOM05D001750 ORTHO05D001825 1.7e-19 100.5 89 60.7
Ciclev10018422m.g Citrus clementina HOM05D001750 ORTHO05D001825 1.7e-19 100.5 89 60.7
Ciclev10027639m.g Citrus clementina HOM05D001750 ORTHO05D001825 1.7e-19 100.5 89 60.7
Ciclev10030454m.g Citrus clementina HOM05D001750 ORTHO05D001825 1.7e-19 100.5 89 60.7
Psat5g142840 Pisum sativum HOM05D001750 ORTHO05D001825 2.9e-19 99.8 89 60.7
Hund04278 Selenicereus undatus HOM05D001750 ORTHO05D001825 2.9e-19 99.8 127 48.0
Nitab4.5_0007104g0110 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.1e-18 97.8 100 53.0
TPR.G28398 Trifolium pratense HOM05D001750 ORTHO05D001825 2.7e-17 93.2 89 58.4
Solyc02g011720.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.2e-15 87.8 182 36.3
CAN.G8.25 Capsicum annuum HOM05D001750 ORTHO05D001825 5.7e-15 85.5 60 73.3
Gorai.002G182500 Gossypium raimondii HOM05D001750 ORTHO05D001825 1.3e-14 84.3 83 56.6
SHI48909 Sapria himalayana HOM05D001750 ORTHO05D001825 6.3e-14 82.0 170 37.1
Zm00001eb384430 Zea mays HOM05D001750 ORTHO05D001825 3.1e-13 79.7 153 38.6
Zm00001eb384490 Zea mays HOM05D001750 ORTHO05D001825 3.1e-13 79.7 153 38.6
Zm00001eb384540 Zea mays HOM05D001750 ORTHO05D001825 3.1e-13 79.7 153 38.6
Zm00001eb437920 Zea mays HOM05D001750 ORTHO05D001825 3.1e-13 79.7 153 38.6
Zm00001eb438010 Zea mays HOM05D001750 ORTHO05D001825 3.1e-13 79.7 153 38.6
Zm00001eb439010 Zea mays HOM05D001750 ORTHO05D001825 3.1e-13 79.7 153 38.6
Zm00001eb440820 Zea mays HOM05D001750 ORTHO05D001825 3.1e-13 79.7 153 38.6
Zm00001eb442540 Zea mays HOM05D001750 ORTHO05D001825 3.1e-13 79.7 153 38.6
Thhalv10023164m.g Eutrema salsugineum HOM05D001750 ORTHO05D001825 5.4e-13 79.0 75 57.3
ATMG00513 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 2.7e-12 76.6 181 30.9
Ciclev10027648m.g Citrus clementina HOM05D001750 ORTHO05D001825 3.5e-12 76.3 74 56.8
PSO017G5352 Papaver somniferum HOM05D001750 ORTHO05D001825 7.7e-12 75.1 135 37.0
FvH4_c1g00470 Fragaria vesca HOM05D001750 ORTHO05D001825 1.0e-11 74.7 161 35.4
BolSC49t61137H Brassica oleracea HOM05D001750 ORTHO05D001825 1.3e-11 74.3 114 44.7
Cpa.g.sc900.3 Carica papaya HOM05D001750 ORTHO05D001825 1.3e-11 74.3 104 41.3
Gohir.A07G167090 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.7e-11 73.9 46 82.6
GSVIVG01004972001 Vitis vinifera HOM05D001750 ORTHO05D001825 2.2e-11 73.6 77 53.2
Sp3g25940 Schrenkiella parvula HOM05D001750 ORTHO05D001825 5.0e-11 72.4 153 36.6
Aa31sc483G10 Aethionema arabicum HOM05D001750 ORTHO05D001825 1.5e-10 70.9 90 44.4
BolSC28t60420H Brassica oleracea HOM05D001750 ORTHO05D001825 1.5e-10 70.9 90 44.4
BraSC48t46283Z Brassica rapa HOM05D001750 ORTHO05D001825 1.5e-10 70.9 90 44.4
BraSC77t46633Z Brassica rapa HOM05D001750 ORTHO05D001825 1.5e-10 70.9 90 44.4
FvH4_6g34420 Fragaria vesca HOM05D001750 ORTHO05D001825 2.5e-10 70.1 86 46.5
TPR.G28320 Trifolium pratense HOM05D001750 ORTHO05D001825 2.5e-10 70.1 86 46.5
Nn117s43413 Nelumbo nucifera HOM05D001750 ORTHO05D001825 3.2e-10 69.7 89 46.1
Lalb_Chr17g0337371 Lupinus albus HOM05D001750 ORTHO05D001825 5.5e-10 68.9 87 44.8
Solyc00g500169.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 5.5e-10 68.9 150 35.3
Migut.D01382 Erythranthe guttata HOM05D001750 ORTHO05D001825 9.4e-10 68.2 124 37.1
VMungo0329G0001 Vigna mungo HOM05D001750 ORTHO05D001825 9.4e-10 68.2 83 47.0
Gohir.D09G044501 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.2e-09 67.8 47 76.6
Phvul.005G088400 Phaseolus vulgaris HOM05D001750 ORTHO05D001825 1.2e-09 67.8 83 47.0
SEGI_04456 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 2.1e-09 67.0 90 47.8
MBI06_g25391_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 2.7e-09 66.6 83 47.0
Nn117s43418 Nelumbo nucifera HOM05D001750 ORTHO05D001825 2.7e-09 66.6 83 47.0
Nn1g10108 Nelumbo nucifera HOM05D001750 ORTHO05D001825 2.7e-09 66.6 83 47.0
Nn1g10189 Nelumbo nucifera HOM05D001750 ORTHO05D001825 2.7e-09 66.6 83 47.0
Nn1g10194 Nelumbo nucifera HOM05D001750 ORTHO05D001825 2.7e-09 66.6 83 47.0
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 3.6e-09 66.2 184 32.6
Medtr8g059760 Medicago truncatula HOM05D001750 ORTHO05D011738 5.2e-08 62.4 47 68.1
SEGI_05810 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 1.2e-07 61.2 107 39.3
Migut.C00050 Erythranthe guttata HOM05D001750 ORTHO05D001825 4.4e-07 59.3 54 59.3
Nitab4.5_0001788g0200 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.3e-06 57.8 77 45.5
arahy.Tifrunner.gnm1.ann1.GEK8SS Arachis hypogaea HOM05D001750 ORTHO05D001825 2.8e-06 56.6 40 65.0
EL10As4g23402 Beta vulgaris HOM05D001750 ORTHO05D001825 2.8e-06 56.6 27 85.2
Nitab4.5_0007979g0040 Nicotiana tabacum HOM05D000729 ORTHO05D002596 2.8e-06 56.6 40 62.5


User provided reference genes

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