Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G080600 Populus trichocarpa HOM05D006050 ORTHO05D007457 3.6e-302 1040.8 536 100.0
Sabra11G0069700 Salix brachista HOM05D006050 ORTHO05D007457 1.0e-251 873.2 494 92.9
Sabra11G0067500 Salix brachista HOM05D006050 ORTHO05D007457 6.3e-230 800.8 515 84.7
Manes.17G069500 Manihot esculenta HOM05D006050 ORTHO05D007457 1.6e-188 663.3 502 69.1
Atru.chr10.1253 Acer truncatum HOM05D006050 ORTHO05D007457 6.2e-185 651.4 507 68.8
Thecc.06G151800 Theobroma cacao HOM05D006050 ORTHO05D007457 2.9e-182 642.5 457 71.6
QL05p058532 Quercus lobata HOM05D006050 ORTHO05D007457 1.4e-181 640.2 502 68.1
PGR083G2192 Punica granatum HOM05D006050 ORTHO05D007457 2.3e-179 632.9 456 70.0
FvH4_3g05720 Fragaria vesca HOM05D006050 ORTHO05D007457 1.1e-176 624.0 476 67.4
RcHm_v2.0_Chr5g0013951 Rosa chinensis HOM05D006050 ORTHO05D007457 4.0e-176 622.1 509 64.8
MD05G1284800 Malus domestica HOM05D006050 ORTHO05D007457 5.3e-176 621.7 505 65.9
TWI73G0574 Tripterygium wilfordii HOM05D006050 ORTHO05D007457 6.4e-174 614.8 481 68.0
MD10G1263200 Malus domestica HOM05D006050 ORTHO05D007457 4.2e-173 612.1 505 65.5
GSVIVG01021436001 Vitis vinifera HOM05D006050 ORTHO05D007457 5.4e-173 611.7 422 74.4
CiPaw.09G124900 Carya illinoinensis HOM05D006050 ORTHO05D007457 2.5e-170 602.8 485 67.2
Eucgr.D00300 Eucalyptus grandis HOM05D006050 ORTHO05D007457 5.6e-170 601.7 487 63.9
Gohir.D05G151500 Gossypium hirsutum HOM05D006050 ORTHO05D007457 2.1e-169 599.7 460 68.3
Gorai.009G155500 Gossypium raimondii HOM05D006050 ORTHO05D007457 2.8e-169 599.4 460 68.3
Gohir.A05G149000 Gossypium hirsutum HOM05D006050 ORTHO05D007457 9.0e-168 594.3 460 68.0
Dinv30732 Davidia involucrata HOM05D006050 ORTHO05D007457 1.5e-167 593.6 409 74.8
Haze_05583 Corylus avellana HOM05D006050 ORTHO05D007457 7.6e-167 591.3 530 62.8
TAR627G0203 Trochodendron aralioides HOM05D006050 ORTHO05D007457 3.2e-165 585.9 512 61.9
Cc09_g09460 Coffea canephora HOM05D006050 ORTHO05D007457 7.1e-165 584.7 469 65.0
Sed0022060 Sechium edule HOM05D006050 ORTHO05D007457 7.9e-164 581.3 516 60.5
CsaV3_1G032660 Cucumis sativus L. HOM05D006050 ORTHO05D007457 1.1e-162 577.4 516 61.2
Rhsim13G0194500 Rhododendron simsii HOM05D006050 ORTHO05D007457 5.6e-162 575.1 497 63.2
Aqoxy4G00089 Aquilegia oxysepala HOM05D006050 ORTHO05D007457 1.6e-161 573.5 479 62.8
Actinidia19520 Actinidia chinensis HOM05D006050 ORTHO05D007457 4.8e-161 572.0 481 64.2
CAN.G650.1 Capsicum annuum HOM05D006050 ORTHO05D007457 1.1e-160 570.9 454 66.1
Hma1.2p1_0286F.1_g114100 Hydrangea macrophylla HOM05D006050 ORTHO05D007457 1.8e-160 570.1 418 69.4
Solyc02g070560.3 Solanum lycopersicum HOM05D006050 ORTHO05D007457 1.2e-159 567.4 502 62.4
ClCG03G007090 Citrullus lanatus HOM05D006050 ORTHO05D007457 7.6e-159 564.7 506 59.7
Lj2C306G12 Lonicera japonica HOM05D006050 ORTHO05D007457 3.8e-158 562.4 503 60.6
Nitab4.5_0002275g0100 Nicotiana tabacum HOM05D006050 ORTHO05D007457 8.4e-158 561.2 488 62.7
Peaxi162Scf00170g00718 Petunia axillaris HOM05D006050 ORTHO05D007457 2.5e-157 559.7 446 66.1
FAN25G0090 Fragaria x ananassa HOM05D006050 ORTHO05D007457 5.5e-157 558.5 476 62.6
FAN21G0460 Fragaria x ananassa HOM05D006050 ORTHO05D007457 7.1e-157 558.1 476 62.8
Nitab4.5_0009607g0030 Nicotiana tabacum HOM05D006050 ORTHO05D007457 1.2e-156 557.4 482 62.2
Oeu052380.1 Olea europaea HOM05D006050 ORTHO05D007457 2.1e-156 556.6 445 65.2
HanXRQChr02g0047351 Helianthus annuus HOM05D006050 ORTHO05D007457 3.3e-154 549.3 494 61.1
Nn3g20737 Nelumbo nucifera HOM05D006050 ORTHO05D007457 2.4e-152 543.1 491 62.1
Lj6g0009694 Lotus japonicus HOM05D006050 ORTHO05D007457 1.0e-150 537.7 449 63.5
Duzib192G0778 Durio zibethinus HOM05D006050 ORTHO05D007457 1.3e-150 537.3 520 57.7
Migut.M00918 Erythranthe guttata HOM05D006050 ORTHO05D007457 2.9e-150 536.2 456 60.5
Glyma.15G094900 Glycine max HOM05D006050 ORTHO05D007457 5.5e-149 531.9 510 58.4
Ca_00551_v3 Cicer arietinum L. HOM05D006050 ORTHO05D007457 2.3e-147 526.6 507 59.4
Duzib235G1544 Durio zibethinus HOM05D006050 ORTHO05D007457 3.0e-147 526.2 520 57.7
vmacro04186 Vaccinium macrocarpon HOM05D006050 ORTHO05D007457 6.7e-147 525.0 370 73.8
PSO017G0250 Papaver somniferum HOM05D006050 ORTHO05D007457 3.3e-146 522.7 504 58.7
Psat1g190800 Pisum sativum HOM05D006050 ORTHO05D007457 3.3e-146 522.7 455 62.4
Sc05g0006350 Simmondsia chinensis HOM05D006050 ORTHO05D007457 9.7e-146 521.2 452 61.1
PSO170G3783 Papaver somniferum HOM05D006050 ORTHO05D007457 1.8e-144 516.9 450 61.3
Phvul.006G163900 Phaseolus vulgaris HOM05D006050 ORTHO05D007457 3.1e-144 516.2 509 56.8
Ciclev10017950m.g Citrus clementina HOM05D006050 ORTHO05D007457 4.5e-143 512.3 413 64.6
TPR.G28613 Trifolium pratense HOM05D006050 ORTHO05D007457 5.0e-142 508.8 511 56.6
Sp7g15790 Schrenkiella parvula HOM05D006050 ORTHO05D007457 8.5e-142 508.1 508 57.1
ECA248G2274 Erigeron canadensis HOM05D006050 ORTHO05D007457 2.5e-141 506.5 418 63.4
VMungo0540G2452 Vigna mungo HOM05D006050 ORTHO05D007457 5.5e-141 505.4 450 59.6
MELO3C002716.2 Cucumis melo HOM05D006050 ORTHO05D007457 3.9e-139 499.2 453 60.5
AT4G18270 Arabidopsis thaliana HOM05D006050 ORTHO05D007457 9.7e-138 494.6 495 56.8
Thhalv10025036m.g Eutrema salsugineum HOM05D006050 ORTHO05D007457 2.2e-137 493.4 472 58.3
Gorai.011G043000 Gossypium raimondii HOM05D006050 ORTHO05D007457 2.2e-137 493.4 388 63.4
Medtr2g019630 Medicago truncatula HOM05D006050 ORTHO05D007457 4.1e-136 489.2 511 56.8
AL7G36120 Arabidopsis lyrata HOM05D006050 ORTHO05D007457 1.2e-135 487.6 506 55.1
THA.LOC104812850 Tarenaya hassleriana HOM05D006050 ORTHO05D007457 2.0e-135 486.9 489 55.2
BraA03t14200Z Brassica rapa HOM05D006050 ORTHO05D007457 1.6e-132 477.2 474 56.5
A03p51180 Brassica napus HOM05D006050 ORTHO05D007457 2.1e-132 476.9 474 56.3
BolC7t45462H Brassica oleracea HOM05D006050 ORTHO05D007457 2.3e-131 473.4 476 56.3
C07p49580 Brassica napus HOM05D006050 ORTHO05D007457 3.9e-131 472.6 476 56.3
DCAR_003921 Daucus carota HOM05D006050 ORTHO05D007457 6.7e-131 471.9 424 59.4
SGA_v2.0_scaffold1G00164 Striga asiatica HOM05D006050 ORTHO05D007457 2.8e-129 466.5 435 57.5
Ah.09g232650 Amaranthus hybridus HOM05D006050 ORTHO05D007457 1.1e-128 464.5 499 50.7
arahy.Tifrunner.gnm1.ann1.9VA34X Arachis hypogaea HOM05D006050 ORTHO05D007457 3.1e-128 463.0 485 55.3
EL10Ac8g19724 Beta vulgaris HOM05D006050 ORTHO05D007457 4.1e-128 462.6 456 53.5
SalBow8G2368 Salvia bowleyana HOM05D006050 ORTHO05D007457 3.5e-127 459.5 428 56.8
arahy.Tifrunner.gnm1.ann1.49YCVY Arachis hypogaea HOM05D006050 ORTHO05D007457 5.9e-127 458.8 495 54.1
Lsat_1_v5_gn_1_97741 Lactuca sativa HOM05D006050 ORTHO05D007457 5.0e-126 455.7 426 58.0
Aa31LG6G960 Aethionema arabicum HOM05D006050 ORTHO05D007457 6.5e-126 455.3 474 55.1
Cpa.g.sc166.17 Carica papaya HOM05D006050 ORTHO05D007457 6.1e-124 448.7 304 76.6
AUR62027517 Chenopodium quinoa HOM05D006050 ORTHO05D007457 5.3e-120 435.6 567 45.1
HPP92_021321 Vanilla planifolia HOM05D006050 ORTHO05D007457 1.9e-117 427.2 368 57.9
ATR0044G011 Amborella trichopoda HOM05D006050 ORTHO05D007457 5.7e-114 415.6 398 57.5
HPP92_008747 Vanilla planifolia HOM05D006050 ORTHO05D007457 1.3e-113 414.5 387 56.8
AagrBONN_evm.TU.Sc2ySwM_228.2617 Anthoceros agrestis HOM05D006050 ORTHO05D007457 1.6e-111 407.5 467 49.9
FvH4_3g05710 Fragaria vesca HOM05D006050 ORTHO05D007457 8.8e-107 391.7 321 64.2
SMO239G0146 Selaginella moellendorffii HOM05D006050 ORTHO05D007457 4.4e-106 389.4 326 62.0
SGA_v2.0_scaffold333G48995 Striga asiatica HOM05D001706 ORTHO05D007457 2.4e-96 357.1 422 49.8
Mapoly0001s0010 Marchantia polymorpha HOM05D006050 ORTHO05D007457 1.0e-94 351.7 409 49.9
CBR_g3965 Chara braunii HOM05D006050 ORTHO05D007457 1.5e-93 347.8 364 50.3
Prupe.4G079600 Prunus persica HOM05D006050 ORTHO05D007457 1.3e-86 324.7 305 56.7
COL.COLO4_31087 Corchorus olitorius HOM05D006050 ORTHO05D007457 9.2e-80 302.0 318 52.5
AUR62030211 Chenopodium quinoa HOM05D006050 ORTHO05D007457 1.0e-78 298.5 328 50.9
MBI10_g02216_MAGBIO Magnolia biondii HOM05D006050 ORTHO05D007457 1.9e-77 294.3 213 71.4
Glyma.13G217500 Glycine max HOM05D006050 ORTHO05D007457 4.4e-74 283.1 300 52.0
Carub.0007s2301 Capsella rubella HOM05D006050 ORTHO05D007457 1.1e-72 278.5 194 73.7
Lalb_Chr18g0055521 Lupinus albus HOM05D006050 ORTHO05D007457 1.9e-69 267.7 319 46.1
Lalb_Chr18g0055531 Lupinus albus HOM05D006050 ORTHO05D007457 3.3e-69 266.9 190 71.6
PGSC0003DMG401021159 Solanum tuberosum HOM05D006050 ORTHO05D007457 6.9e-67 259.2 166 79.5
MBI10_g02215_MAGBIO Magnolia biondii HOM05D006050 ORTHO05D007457 4.9e-65 253.1 276 51.8
BcaNung05669 Brassica carinata HOM05D006050 ORTHO05D007457 7.6e-58 229.2 166 71.1
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 2.9e-57 227.3 293 45.4
Carub.0007s2300 Capsella rubella HOM05D006050 ORTHO05D007457 2.7e-55 220.7 309 44.7
PRCOL_00000982 Prasinoderma coloniale HOM05D006050 ORTHO05D007457 7.4e-53 212.6 323 42.7
PGSC0003DMG402021159 Solanum tuberosum HOM05D006050 ORTHO05D007457 8.1e-52 209.1 182 59.9
Zm00001eb120180 Zea mays HOM05D006050 ORTHO05D007457 2.2e-49 201.1 298 42.3
Gohir.A10G040000 Gossypium hirsutum HOM05D006050 ORTHO05D007457 1.1e-48 198.7 191 50.8
Gohir.D10G040800 Gossypium hirsutum HOM05D006050 ORTHO05D007457 3.5e-47 193.7 191 50.3
CARHR225070 Cardamine hirsuta HOM05D006050 ORTHO05D007457 5.1e-46 189.9 273 44.7
SEGI_20862 Sequoiadendron giganteum HOM05D006050 ORTHO05D007457 6.7e-46 189.5 123 75.6
FAN11G0378 Fragaria x ananassa HOM05D006050 ORTHO05D007457 1.3e-44 185.3 143 65.7
DCAR_029765 Daucus carota HOM05D006050 ORTHO05D007457 2.8e-44 184.1 174 56.9
Cpa.g.sc166.18 Carica papaya HOM05D006050 ORTHO05D007457 3.1e-43 180.6 106 87.7
SEGI_21633 Sequoiadendron giganteum HOM05D006050 ORTHO05D007457 1.7e-41 174.9 153 56.9
MCO07G478 Micromonas commoda HOM05D006050 ORTHO05D007457 9.3e-40 169.1 366 36.3
Sopen02g019650 Solanum pennellii HOM05D006050 ORTHO05D007457 7.9e-39 166.0 307 38.1
unitig_32.g11518 Utricularia gibba HOM05D006050 ORTHO05D007457 1.9e-37 161.4 235 40.4
Pp3c6_19460 Physcomitrium patens HOM05D006050 ORTHO05D007457 7.4e-37 159.5 185 45.9
AUR62030212 Chenopodium quinoa HOM05D006050 ORTHO05D007457 3.2e-32 144.1 144 53.5
PSO063G2775 Papaver somniferum HOM05D006050 ORTHO05D007457 1.7e-28 131.7 105 66.7
CSS0017405 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 3.8e-25 120.6 71 88.7
Mapoly0042s0029 Marchantia polymorpha HOM05D006050 ORTHO05D007457 3.0e-22 110.9 154 42.2
CSS0043541 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 9.7e-21 105.9 76 72.4
DCAR_011844 Daucus carota HOM05D006050 ORTHO05D007457 3.1e-19 100.9 89 58.4
Cpa.g.sc166.16 Carica papaya HOM05D006050 ORTHO05D007457 1.5e-18 98.6 134 45.5
COL.COLO4_31088 Corchorus olitorius HOM05D006050 ORTHO05D007457 5.9e-18 96.7 61 78.7
CSS0038270 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 1.4e-14 85.5 74 60.8
vmacro04187 Vaccinium macrocarpon HOM05D006050 ORTHO05D030710 1.1e-13 82.4 111 42.3
CSS0030855 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 5.3e-11 73.6 45 75.6
CSS0036908 Camellia sinensis var. sinensis HOM05D006050 ORTHO05D007457 5.3e-11 73.6 45 75.6
FAN16G0730 Fragaria x ananassa HOM05D006050 ORTHO05D007457 1.9e-08 65.1 64 50.0
unitig_32.g11513 Utricularia gibba HOM05D057528 ORTHO05D030710 2.5e-08 64.7 69 43.5


User provided reference genes

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