Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G080300 Populus trichocarpa HOM05D006198 ORTHO05D008226 4.8e-135 484.6 258 100.0
Sabra11G0070000 Salix brachista HOM05D006198 ORTHO05D008226 1.1e-97 360.5 206 92.7
Sabra11G0067700 Salix brachista HOM05D006198 ORTHO05D008226 6.8e-97 357.8 206 92.2
COL.COLO4_38286 Corchorus olitorius HOM05D006198 ORTHO05D008226 1.8e-89 333.2 257 72.8
Cpa.g.sc166.25 Carica papaya HOM05D006198 ORTHO05D008226 5.2e-89 331.6 255 71.4
Manes.15G120300 Manihot esculenta HOM05D006198 ORTHO05D008226 5.2e-89 331.6 255 73.7
Thecc.06G152500 Theobroma cacao HOM05D006198 ORTHO05D008226 6.8e-89 331.3 254 72.8
TWI09G1426 Tripterygium wilfordii HOM05D006198 ORTHO05D008226 8.9e-89 330.9 254 70.9
TWI53G0219 Tripterygium wilfordii HOM05D006198 ORTHO05D008226 4.4e-88 328.6 255 71.4
Duzib160G0456 Durio zibethinus HOM05D006198 ORTHO05D008226 1.4e-86 323.6 254 70.9
Dinv30723 Davidia involucrata HOM05D006198 ORTHO05D008226 9.2e-86 320.9 260 71.2
Atru.chr10.1293 Acer truncatum HOM05D006198 ORTHO05D008226 7.8e-85 317.8 255 67.5
Atru.chr10.1313 Acer truncatum HOM05D006198 ORTHO05D008226 1.3e-84 317.0 255 67.8
Eucgr.E02394 Eucalyptus grandis HOM05D006198 ORTHO05D008226 8.6e-84 314.3 252 68.3
TAR629G2249 Trochodendron aralioides HOM05D006198 ORTHO05D008226 8.6e-84 314.3 254 68.5
TAR629G0041 Trochodendron aralioides HOM05D006198 ORTHO05D008226 1.1e-83 313.9 246 70.3
CiPaw.09G125600 Carya illinoinensis HOM05D006198 ORTHO05D008226 4.3e-83 312.0 257 68.1
Gohir.D09G077900 Gossypium hirsutum HOM05D006198 ORTHO05D008226 4.3e-83 312.0 254 68.9
Lalb_Chr12g0208941 Lupinus albus HOM05D006198 ORTHO05D008226 7.3e-83 311.2 250 68.0
Gohir.A09G077700 Gossypium hirsutum HOM05D006198 ORTHO05D008226 9.6e-83 310.8 254 68.9
Gorai.006G093100 Gossypium raimondii HOM05D006198 ORTHO05D008226 1.2e-82 310.5 254 68.9
Nn3g20699 Nelumbo nucifera HOM05D006198 ORTHO05D008226 1.6e-82 310.1 247 70.0
Atru.chr10.1297 Acer truncatum HOM05D006198 ORTHO05D008226 2.1e-82 309.7 255 66.3
Ciclev10016356m.g Citrus clementina HOM05D006198 ORTHO05D008226 8.1e-82 307.8 257 66.5
Nn6g32274 Nelumbo nucifera HOM05D006198 ORTHO05D008226 1.4e-81 307.0 247 68.8
QL05p058855 Quercus lobata HOM05D006198 ORTHO05D008226 2.4e-81 306.2 258 67.4
CsaV3_6G051650 Cucumis sativus L. HOM05D006198 ORTHO05D008226 8.9e-81 304.3 254 66.5
Lj4g0025062 Lotus japonicus HOM05D006198 ORTHO05D003063 1.2e-80 303.9 254 67.3
RcHm_v2.0_Chr5g0013711 Rosa chinensis HOM05D006198 ORTHO05D008226 1.2e-80 303.9 252 67.1
MBI10_g21114_MAGBIO Magnolia biondii HOM05D006198 ORTHO05D008226 5.8e-80 301.6 247 67.6
MELO3C007142.2 Cucumis melo HOM05D006198 ORTHO05D008226 7.6e-80 301.2 254 64.6
FvH4_3g05790 Fragaria vesca HOM05D006198 ORTHO05D008226 4.9e-79 298.5 248 66.9
FAN16G3463 Fragaria x ananassa HOM05D006198 ORTHO05D008226 4.9e-79 298.5 252 66.7
Prupe.4G078700 Prunus persica HOM05D006198 ORTHO05D008226 4.9e-79 298.5 255 66.3
arahy.Tifrunner.gnm1.ann1.ET305C Arachis hypogaea HOM05D006198 ORTHO05D008226 8.4e-79 297.7 248 67.7
Ca_18268_v3 Cicer arietinum L. HOM05D006198 ORTHO05D008226 1.4e-78 297.0 252 67.1
ClCG01G024530 Citrullus lanatus HOM05D006198 ORTHO05D008226 2.4e-78 296.2 253 66.0
GSVIVG01021428001 Vitis vinifera HOM05D006198 ORTHO05D008226 3.2e-78 295.8 232 70.3
arahy.Tifrunner.gnm1.ann1.8B838V Arachis hypogaea HOM05D006198 ORTHO05D008226 4.2e-78 295.4 248 67.3
MD10G1263800 Malus domestica HOM05D006198 ORTHO05D008226 7.1e-78 294.7 259 64.9
MSTRG.16229 Avicennia marina HOM05D006198 ORTHO05D008226 1.2e-77 293.9 265 66.4
Glyma.09G082200 Glycine max HOM05D006198 ORTHO05D008226 1.2e-77 293.9 252 65.5
PGR083G0877 Punica granatum HOM05D006198 ORTHO05D008226 1.2e-77 293.9 253 62.8
Phvul.009G219000 Phaseolus vulgaris HOM05D006198 ORTHO05D008226 1.6e-77 293.5 250 66.0
FAN11G0340 Fragaria x ananassa HOM05D006198 ORTHO05D008226 3.5e-77 292.4 248 66.1
Actinidia39563 Actinidia chinensis HOM05D006198 ORTHO05D008226 4.6e-77 292.0 262 66.0
SalBow8G2100 Salvia bowleyana HOM05D006198 ORTHO05D008226 6.0e-77 291.6 268 64.9
Sed0015649 Sechium edule HOM05D006198 ORTHO05D008226 1.7e-76 290.0 255 62.7
Lj2A307G26 Lonicera japonica HOM05D006198 ORTHO05D008226 3.0e-76 289.3 262 66.4
Glyma.15G190700 Glycine max HOM05D006198 ORTHO05D008226 6.6e-76 288.1 251 64.1
Migut.M00923 Erythranthe guttata HOM05D006198 ORTHO05D008226 1.1e-75 287.3 265 63.8
Psat7g090320 Pisum sativum HOM05D006198 ORTHO05D008226 1.1e-75 287.3 252 65.1
Hma1.2p1_0259F.1_g104290 Hydrangea macrophylla HOM05D006198 ORTHO05D008226 1.9e-75 286.6 246 68.3
vmacro15943 Vaccinium macrocarpon HOM05D006198 ORTHO05D008226 7.3e-75 284.6 260 65.0
Nitab4.5_0005219g0070 Nicotiana tabacum HOM05D006198 ORTHO05D008226 3.6e-74 282.3 268 63.4
PSO170G0869 Papaver somniferum HOM05D006198 ORTHO05D008226 3.6e-74 282.3 251 65.7
Aqoxy4G00108 Aquilegia oxysepala HOM05D006198 ORTHO05D008226 1.4e-73 280.4 251 62.5
Cfa000959 Carpinus fangiana HOM05D006198 ORTHO05D008226 1.8e-73 280.0 233 70.4
EL10Ac8g19743 Beta vulgaris HOM05D006198 ORTHO05D008226 4.0e-73 278.9 252 61.1
Haze_05575 Corylus avellana HOM05D006198 ORTHO05D008226 9.0e-73 277.7 309 57.6
Nitab4.5_0001655g0050 Nicotiana tabacum HOM05D006198 ORTHO05D008226 9.0e-73 277.7 268 62.7
VMungo1309G2860 Vigna mungo HOM05D006198 ORTHO05D008226 4.4e-72 275.4 273 60.1
Actinidia07684 Actinidia chinensis HOM05D006198 ORTHO05D008226 1.3e-71 273.9 263 63.9
HanXRQChr01g0020411 Helianthus annuus HOM05D006198 ORTHO05D008226 1.7e-71 273.5 251 64.1
Peaxi162Scf00796g00114 Petunia axillaris HOM05D006198 ORTHO05D008226 1.7e-71 273.5 249 63.9
ECA248G2800 Erigeron canadensis HOM05D006198 ORTHO05D008226 2.2e-71 273.1 252 61.5
Medtr4g096750 Medicago truncatula HOM05D006198 ORTHO05D008226 2.2e-71 273.1 258 61.6
ATR0585G073 Amborella trichopoda HOM05D006198 ORTHO05D008226 8.4e-71 271.2 247 62.8
Sopen02g019760 Solanum pennellii HOM05D006198 ORTHO05D008226 1.4e-70 270.4 262 61.8
AUR62027530 Chenopodium quinoa HOM05D006198 ORTHO05D008226 5.4e-70 268.5 280 56.4
Lsat_1_v5_gn_1_96760 Lactuca sativa HOM05D006198 ORTHO05D008226 1.2e-69 267.3 259 61.0
CANSAT35G1481 Cannabis sativa HOM05D006198 ORTHO05D008226 2.7e-69 266.2 251 62.2
CDE02G2137 Ceratophyllum demersum HOM05D006198 ORTHO05D008226 2.7e-69 266.2 252 60.3
AUR62030229 Chenopodium quinoa HOM05D006198 ORTHO05D008226 2.7e-69 266.2 295 53.9
PGSC0003DMG401008288 Solanum tuberosum HOM05D006198 ORTHO05D008226 7.9e-69 264.6 267 59.6
SGA_v2.0_scaffold333G48994 Striga asiatica HOM05D006198 ORTHO05D008226 7.9e-69 264.6 266 61.7
CAN.G650.24 Capsicum annuum HOM05D006198 ORTHO05D008226 1.1e-67 260.8 260 59.6
Sc24g0001850 Simmondsia chinensis HOM05D006198 ORTHO05D008226 4.3e-67 258.8 250 59.6
THA.LOC104827723 Tarenaya hassleriana HOM05D006198 ORTHO05D008226 2.1e-66 256.5 247 59.1
Cc09_g09250 Coffea canephora HOM05D006198 ORTHO05D008226 3.6e-66 255.8 237 63.3
Thhalv10024846m.g Eutrema salsugineum HOM05D006198 ORTHO05D003063 3.6e-66 255.8 247 58.7
C07p49570 Brassica napus HOM05D006198 ORTHO05D003063 4.0e-65 252.3 252 59.5
Aa31LG6G950 Aethionema arabicum HOM05D006198 ORTHO05D008226 5.3e-65 251.9 250 58.4
A03p51170 Brassica napus HOM05D006198 ORTHO05D003063 2.0e-64 250.0 246 60.2
Sp7g15810 Schrenkiella parvula HOM05D006198 ORTHO05D008226 2.0e-64 250.0 265 57.0
BraA03t14199Z Brassica rapa HOM05D006198 ORTHO05D003063 2.6e-64 249.6 246 60.2
BolC7t45461H Brassica oleracea HOM05D006198 ORTHO05D003063 5.8e-64 248.4 246 60.2
HPP92_023266 Vanilla planifolia HOM05D006198 ORTHO05D008226 9.9e-64 247.7 252 57.9
HPP92_023299 Vanilla planifolia HOM05D006198 ORTHO05D008226 2.2e-63 246.5 252 57.5
AL7G36130 Arabidopsis lyrata HOM05D006198 ORTHO05D003063 7.1e-62 241.5 251 56.6
DCAR_025303 Daucus carota HOM05D006198 ORTHO05D008226 9.3e-62 241.1 257 57.2
Carub.0007s2303 Capsella rubella HOM05D006198 ORTHO05D008226 3.5e-61 239.2 252 57.9
unitig_578.g16668 Utricularia gibba HOM05D006198 ORTHO05D008226 6.0e-61 238.4 255 59.2
SGA_v2.0_scaffold1G00157 Striga asiatica HOM05D006198 ORTHO05D008226 5.1e-60 235.3 266 56.0
Zm00001eb157440 Zea mays HOM05D006198 ORTHO05D008226 9.6e-59 231.1 256 54.3
Zm00001eb359760 Zea mays HOM05D006198 ORTHO05D008226 1.6e-58 230.3 263 53.6
Os01g0666500 Oryza sativa ssp. japonica HOM05D006198 ORTHO05D008226 4.8e-58 228.8 255 53.3
PSO017G1039 Papaver somniferum HOM05D006198 ORTHO05D008226 4.0e-57 225.7 222 60.8
SEGI_09220 Sequoiadendron giganteum HOM05D006198 ORTHO05D008226 4.5e-56 222.2 261 52.5
BcaNung05123 Brassica carinata HOM05D006198 ORTHO05D008226 1.3e-55 220.7 231 56.7
BcaNung05671 Brassica carinata HOM05D006198 ORTHO05D008226 1.3e-55 220.7 231 57.6
Oeu030914.3 Olea europaea HOM05D006198 ORTHO05D008226 1.4e-54 217.2 305 48.5
Solyc02g070680.4 Solanum lycopersicum HOM05D006198 ORTHO05D008226 1.2e-53 214.2 208 59.6
AagrBONN_evm.TU.Sc2ySwM_228.4358 Anthoceros agrestis HOM05D006198 ORTHO05D008226 1.5e-51 207.2 242 54.1
Rhsim02G0156800 Rhododendron simsii HOM05D006198 ORTHO05D008226 1.8e-49 200.3 250 53.2
Pp3c24_15440 Physcomitrium patens HOM05D006198 ORTHO05D008226 2.5e-46 189.9 259 48.3
Mapoly0061s0133 Marchantia polymorpha HOM05D006198 ORTHO05D008226 1.5e-43 180.6 249 48.6
SMO361G0608 Selaginella moellendorffii HOM05D006198 ORTHO05D008226 1.5e-40 170.6 243 46.5
CARHR225050 Cardamine hirsuta HOM05D006198 ORTHO05D008226 2.0e-40 170.2 163 60.7
Hund21523 Selenicereus undatus HOM05D006198 ORTHO05D008226 2.6e-40 169.9 161 62.7
CDE08G0452 Ceratophyllum demersum HOM05D001706 ORTHO05D008226 9.4e-30 134.8 143 55.9
Atru.chr10.1305 Acer truncatum HOM05D006198 ORTHO05D008226 3.9e-28 129.4 121 60.3
CBR_g31781 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-25 121.3 199 45.2
Atru.chr10.1302 Acer truncatum HOM05D000067 ORTHO05D000280 9.1e-25 118.2 94 64.9
Zm00001eb243030 Zea mays HOM05D006198 ORTHO05D008226 4.0e-20 102.8 125 51.2
Zm00001eb373810 Zea mays HOM05D006198 ORTHO05D008226 4.0e-20 102.8 125 51.2
SEGI_25377 Sequoiadendron giganteum HOM05D006198 ORTHO05D008226 2.6e-19 100.1 95 56.8
Sabra11G0070100 Salix brachista HOM05D006198 ORTHO05D008226 1.4e-17 94.4 54 98.1
Sabra11G0067800 Salix brachista HOM05D006198 ORTHO05D008226 4.1e-17 92.8 53 98.1
CBR_g39020 Chara braunii HOM05D006198 ORTHO05D001303 9.1e-17 91.7 210 37.1
Zm00001eb235600 Zea mays HOM05D006198 ORTHO05D008226 1.6e-16 90.9 118 47.5
Gohir.D05G152000 Gossypium hirsutum HOM05D006198 ORTHO05D008226 2.0e-16 90.5 75 65.3
HanXRQChr14g0435081 Helianthus annuus HOM05D006198 ORTHO05D008226 3.8e-15 86.3 77 62.3
Gorai.009G156000 Gossypium raimondii HOM05D006198 ORTHO05D008226 1.9e-14 84.0 79 62.0
Cre12.g523800 Chlamydomonas reinhardtii HOM05D006198 ORTHO05D008226 7.0e-09 65.5 63 58.7
Cre12.g523832 Chlamydomonas reinhardtii HOM05D006198 ORTHO05D008226 1.2e-08 64.7 179 35.8
MD05G1286000 Malus domestica HOM05D006198 ORTHO05D008226 7.7e-08 62.0 55 69.1


User provided reference genes

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