Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G074301 Populus trichocarpa HOM05D000540 ORTHO05D009557 1.8e-47 192.2 93 100.0
Potri.013G137688 Populus trichocarpa HOM05D000540 ORTHO05D009557 2.2e-45 185.3 93 97.8
Potri.005G154674 Populus trichocarpa HOM05D000540 ORTHO05D009557 2.4e-44 181.8 93 95.7
Lalb_Chr25g0283401 Lupinus albus HOM05D000540 ORTHO05D009557 2.3e-42 175.3 93 89.2
Hma1.2p1_0192F.1_g083730 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 5.0e-42 174.1 92 90.2
Hma1.2p1_0247F.1_g101832 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 5.0e-42 174.1 92 90.2
Hma1.2p1_0298F.1_g117734 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 5.0e-42 174.1 92 90.2
Hma1.2p1_0818F.1_g223303 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 5.0e-42 174.1 92 90.2
HanXRQChr10g0318011 Helianthus annuus HOM05D000540 ORTHO05D009557 1.1e-41 172.9 93 88.2
Lsat_1_v5_gn_0_41560 Lactuca sativa HOM05D000540 ORTHO05D000681 1.9e-41 172.2 93 88.2
CARHR282280 Cardamine hirsuta HOM05D000540 ORTHO05D009557 5.6e-41 170.6 93 86.0
DCAR_032526 Daucus carota HOM05D000540 ORTHO05D009557 7.3e-41 170.2 93 88.2
PGR111G0101 Punica granatum HOM05D000540 ORTHO05D009557 9.5e-41 169.9 93 87.1
C03p38140 Brassica napus HOM05D000540 ORTHO05D009557 1.2e-40 169.5 93 84.9
BolSC35t60674H Brassica oleracea HOM05D000540 ORTHO05D009557 1.2e-40 169.5 93 84.9
BraSC59t46567Z Brassica rapa HOM05D000540 ORTHO05D009557 1.2e-40 169.5 93 84.9
Medtr3g035720 Medicago truncatula HOM05D000540 ORTHO05D009557 2.1e-40 168.7 93 86.0
Medtr4g051420 Medicago truncatula HOM05D000540 ORTHO05D009557 2.1e-40 168.7 93 86.0
PSO548G0068 Papaver somniferum HOM05D000540 ORTHO05D009557 3.6e-40 167.9 93 87.1
arahy.Tifrunner.gnm1.ann1.YHR3P6 Arachis hypogaea HOM05D000540 ORTHO05D009557 3.1e-39 164.9 88 88.6
BolC9t56905H Brassica oleracea HOM05D000540 ORTHO05D009557 3.4e-38 161.4 93 82.8
CARHR114570 Cardamine hirsuta HOM05D000540 ORTHO05D009557 4.4e-38 161.0 91 81.3
Lsat_1_v5_gn_5_50501 Lactuca sativa HOM05D000540 ORTHO05D009557 7.5e-38 160.2 88 86.4
Peaxi162Scf00299g00117 Petunia axillaris HOM05D000540 ORTHO05D009557 9.2e-36 153.3 99 77.8
BolSC35t60725H Brassica oleracea HOM05D000540 ORTHO05D000681 3.0e-34 148.3 80 85.0
C09p40100 Brassica napus HOM05D000540 ORTHO05D000681 2.5e-33 145.2 80 83.8
Gohir.A12G089750 Gossypium hirsutum HOM05D000540 ORTHO05D009557 4.3e-33 144.4 80 85.0
Gohir.A02G076002 Gossypium hirsutum HOM05D000540 ORTHO05D009557 5.6e-33 144.1 88 78.4
Lsat_1_v5_gn_3_22600 Lactuca sativa HOM05D000540 ORTHO05D000681 3.7e-29 131.3 91 71.4
Hund29685 Selenicereus undatus HOM05D002578 ORTHO05D009557 3.7e-29 131.3 74 85.1
Hund30542 Selenicereus undatus HOM05D002578 ORTHO05D009557 3.7e-29 131.3 74 85.1
Hund31295 Selenicereus undatus HOM05D002578 ORTHO05D009557 3.7e-29 131.3 74 85.1
Gohir.D06G105033 Gossypium hirsutum HOM05D000540 ORTHO05D009557 6.4e-29 130.6 75 81.3
Gorai.004G123300 Gossypium raimondii HOM05D000540 ORTHO05D009557 6.4e-29 130.6 78 76.9
Hund31045 Selenicereus undatus HOM05D000540 ORTHO05D000681 4.1e-28 127.9 90 70.0
Gohir.D04G028750 Gossypium hirsutum HOM05D000540 ORTHO05D009557 3.5e-27 124.8 78 79.5
MBI12_g23294_MAGBIO Magnolia biondii HOM05D000540 ORTHO05D009557 7.8e-27 123.6 88 71.6
PSO541G1563 Papaver somniferum HOM05D000540 ORTHO05D009557 3.9e-26 121.3 93 62.4
SMO086G0012 Selaginella moellendorffii HOM05D000540 ORTHO05D009557 8.6e-26 120.2 91 62.6
Potri.019G013302 Populus trichocarpa HOM05D000540 ORTHO05D009557 2.5e-25 118.6 67 83.6
Aqoxy3G00098 Aquilegia oxysepala HOM05D000540 ORTHO05D009557 7.3e-25 117.1 82 67.1
Lj2P692T49 Lonicera japonica HOM05D000540 ORTHO05D009557 1.2e-24 116.3 63 81.0
Hund04059 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.6e-24 115.9 63 88.9
Hund19321 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.6e-24 115.9 63 88.9
Hund26846 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.6e-24 115.9 63 88.9
Hund27592 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.6e-24 115.9 63 88.9
Hund27964 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.6e-24 115.9 63 88.9
Hund28044 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.6e-24 115.9 63 88.9
Hund28461 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.6e-24 115.9 63 88.9
Hund28465 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.6e-24 115.9 63 88.9
Hund28634 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.6e-24 115.9 63 88.9
Hund29039 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.6e-24 115.9 63 88.9
Hund29219 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.6e-24 115.9 63 88.9
Hund29502 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.6e-24 115.9 63 88.9
Hund29527 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.6e-24 115.9 63 88.9
Hund29546 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.6e-24 115.9 63 88.9
Hund29570 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.6e-24 115.9 63 88.9
Hund29607 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.6e-24 115.9 63 88.9
Hund29614 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.6e-24 115.9 63 88.9
Hund29663 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.6e-24 115.9 63 88.9
Hund29959 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.6e-24 115.9 63 88.9
Hund30110 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.6e-24 115.9 63 88.9
Hund30114 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.6e-24 115.9 63 88.9
Hund30274 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.6e-24 115.9 63 88.9
Hund30581 Selenicereus undatus HOM05D000540 ORTHO05D009557 1.6e-24 115.9 63 88.9
Medtr0002s0360 Medicago truncatula HOM05D000540 ORTHO05D000681 4.7e-24 114.4 83 67.5
Medtr0002s0800 Medicago truncatula HOM05D000540 ORTHO05D000681 4.7e-24 114.4 83 67.5
MBI12_g26681_MAGBIO Magnolia biondii HOM05D002578 ORTHO05D009557 6.2e-24 114.0 67 79.1
FvH4_6g09000 Fragaria vesca HOM05D000445 ORTHO05D000314 8.1e-24 113.6 57 93.0
Prupe.4G266600 Prunus persica HOM05D000540 ORTHO05D009557 1.1e-23 113.2 63 87.3
HanXRQChr15g0494391 Helianthus annuus HOM05D000540 ORTHO05D009557 2.9e-21 105.1 77 64.9
Oeu025653.1 Olea europaea HOM05D000218 ORTHO05D000125 3.7e-21 104.8 83 57.8
HanXRQChr11g0337241 Helianthus annuus HOM05D000540 ORTHO05D009557 8.4e-21 103.6 77 64.9
Nn021s41517 Nelumbo nucifera HOM05D000540 ORTHO05D009557 8.4e-21 103.6 50 94.0
Nn070s42375 Nelumbo nucifera HOM05D000540 ORTHO05D009557 8.4e-21 103.6 50 94.0
Oeu011524.2 Olea europaea HOM05D000218 ORTHO05D000125 8.4e-21 103.6 68 67.6
Gohir.D05G303851 Gossypium hirsutum HOM05D000540 ORTHO05D009557 3.2e-20 101.7 50 94.0
Glyma.18G078500 Glycine max HOM05D000540 ORTHO05D009557 4.1e-20 101.3 50 92.0
PSO675G4368 Papaver somniferum HOM05D000540 ORTHO05D009557 4.1e-20 101.3 68 67.6
BolSC29t60614H Brassica oleracea HOM05D000540 ORTHO05D009557 7.1e-20 100.5 59 81.4
Nitab4.5_0001783g0160 Nicotiana tabacum HOM05D000540 ORTHO05D009557 9.2e-20 100.1 76 64.5
MSTRG.19148 Avicennia marina HOM05D000218 ORTHO05D000125 1.2e-19 99.8 86 52.3
RcHm_v2.0_CPg0501831 Rosa chinensis HOM05D000540 ORTHO05D009557 1.2e-19 99.8 50 90.0
AL1G45050 Arabidopsis lyrata HOM05D000540 ORTHO05D009557 1.6e-19 99.4 50 86.0
AL2G20510 Arabidopsis lyrata HOM05D000540 ORTHO05D009557 1.6e-19 99.4 50 86.0
BNapus_Darmor_BZH_scaffold_253p00380 Brassica napus HOM05D000540 ORTHO05D009557 1.6e-19 99.4 50 86.0
BolSC56t61244H Brassica oleracea HOM05D000540 ORTHO05D009557 1.6e-19 99.4 50 86.0
BraSC103t45442Z Brassica rapa HOM05D000540 ORTHO05D009557 1.6e-19 99.4 50 86.0
Lsat_1_v5_gn_7_110000 Lactuca sativa HOM05D000540 ORTHO05D009557 1.6e-19 99.4 77 63.6
ECA236G4531 Erigeron canadensis HOM05D000540 ORTHO05D009557 2.7e-19 98.6 77 61.0
SGA_v2.0_scaffold126G33916 Striga asiatica HOM05D000218 ORTHO05D000125 2.7e-19 98.6 88 52.3
arahy.Tifrunner.gnm1.ann1.CR1XRQ Arachis hypogaea HOM05D003165 ORTHO05D009557 4.6e-19 97.8 58 75.9
CDE04G1374 Ceratophyllum demersum HOM05D000540 ORTHO05D009557 4.6e-19 97.8 70 60.0
CDE07G1014 Ceratophyllum demersum HOM05D000540 ORTHO05D009557 4.6e-19 97.8 70 60.0
Oeu001341.1 Olea europaea HOM05D000218 ORTHO05D000125 4.6e-19 97.8 68 64.7
Oeu028768.1 Olea europaea HOM05D000540 ORTHO05D009557 4.6e-19 97.8 50 90.0
RcHm_v2.0_Chr1g0329571 Rosa chinensis HOM05D000540 ORTHO05D009557 4.6e-19 97.8 50 88.0
Lalb_Chr13g0292571 Lupinus albus HOM05D000540 ORTHO05D009557 6.0e-19 97.4 53 86.8
Lsat_1_v5_gn_5_185760 Lactuca sativa HOM05D000540 ORTHO05D009557 7.8e-19 97.1 77 62.3
Nn4g25228 Nelumbo nucifera HOM05D000540 ORTHO05D009557 7.8e-19 97.1 50 88.0
Gorai.005G167500 Gossypium raimondii HOM05D000540 ORTHO05D009557 1.7e-18 95.9 64 75.0
BolC7t41706H Brassica oleracea HOM05D000540 ORTHO05D009557 2.3e-18 95.5 50 82.0
Haze_26884 Corylus avellana HOM05D000540 ORTHO05D000681 1.1e-17 93.2 92 44.6
MBI12_g18826_MAGBIO Magnolia biondii HOM05D000540 ORTHO05D009557 2.5e-17 92.0 48 85.4
RcHm_v2.0_Chr2g0118531 Rosa chinensis HOM05D000540 ORTHO05D009557 2.5e-17 92.0 50 86.0
unitig_699.g19584 Utricularia gibba HOM05D000218 ORTHO05D000125 3.6e-16 88.2 73 54.8
PSO675G7318 Papaver somniferum HOM05D000540 ORTHO05D009557 3.4e-14 81.6 54 66.7
Sc25g0002530 Simmondsia chinensis HOM05D000540 ORTHO05D000681 7.6e-14 80.5 58 67.2
PSO349G0315 Papaver somniferum HOM05D000540 ORTHO05D009557 1.7e-13 79.3 54 63.0
Migut.J00430 Erythranthe guttata HOM05D000540 ORTHO05D009557 1.9e-12 75.9 64 56.2
Nitab4.5_0004376g0170 Nicotiana tabacum HOM05D002578 ORTHO05D009557 4.2e-12 74.7 37 91.9
Medtr8g038480 Medicago truncatula HOM05D000540 ORTHO05D009557 4.6e-11 71.2 39 79.5
AT5G47320 Arabidopsis thaliana HOM05D000540 ORTHO05D008105 3.0e-10 68.6 86 45.3
Carub.0008s0045 Capsella rubella HOM05D000540 ORTHO05D008105 6.6e-10 67.4 86 44.2
AL8G10730 Arabidopsis lyrata HOM05D000540 ORTHO05D008105 8.7e-10 67.0 86 44.2
C01p39820 Brassica napus HOM05D000540 ORTHO05D008105 3.3e-09 65.1 90 41.1
Prupe.2G123500 Prunus persica HOM05D000540 ORTHO05D008105 3.3e-09 65.1 82 42.7
BraA01t03249Z Brassica rapa HOM05D000540 ORTHO05D008105 5.6e-09 64.3 90 41.1
Zm00001eb219510 Zea mays HOM05D000540 ORTHO05D008105 7.3e-09 63.9 98 41.8
Zm00001eb321840 Zea mays HOM05D000540 ORTHO05D008105 7.3e-09 63.9 98 41.8
Zm00001eb321850 Zea mays HOM05D000540 ORTHO05D008105 7.3e-09 63.9 98 41.8
BolC1t03932H Brassica oleracea HOM05D000540 ORTHO05D008105 9.6e-09 63.5 90 41.1
BcaB04g20419 Brassica carinata HOM05D000540 ORTHO05D008105 1.3e-08 63.2 86 41.9
BcaB06g26544 Brassica carinata HOM05D000540 ORTHO05D008105 1.3e-08 63.2 86 41.9
BcaC06g35575 Brassica carinata HOM05D000540 ORTHO05D008105 1.3e-08 63.2 86 41.9
A01p31250 Brassica napus HOM05D000540 ORTHO05D008105 1.3e-08 63.2 86 41.9
A03p43380 Brassica napus HOM05D000540 ORTHO05D008105 1.3e-08 63.2 86 41.9
A07p08550 Brassica napus HOM05D000540 ORTHO05D008105 1.3e-08 63.2 86 41.9
C07p13360 Brassica napus HOM05D000540 ORTHO05D008105 1.3e-08 63.2 86 41.9
BolC7t41830H Brassica oleracea HOM05D000540 ORTHO05D008105 1.3e-08 63.2 86 41.9
BraA03t13476Z Brassica rapa HOM05D000540 ORTHO05D008105 1.3e-08 63.2 86 41.9
BraA07t28644Z Brassica rapa HOM05D000540 ORTHO05D008105 1.3e-08 63.2 86 41.9
Thhalv10002665m.g Eutrema salsugineum HOM05D000540 ORTHO05D008105 1.3e-08 63.2 86 41.9
Sp3g21530 Schrenkiella parvula HOM05D000540 ORTHO05D008105 1.3e-08 63.2 86 41.9
BcaC01g03363 Brassica carinata HOM05D000540 ORTHO05D008105 2.1e-08 62.4 86 41.9
BolC3t17591H Brassica oleracea HOM05D000540 ORTHO05D008105 2.1e-08 62.4 86 41.9
DCAR_015262 Daucus carota HOM05D000540 ORTHO05D008105 2.1e-08 62.4 88 40.9
Zm00001eb003570 Zea mays HOM05D000540 ORTHO05D008105 2.8e-08 62.0 98 40.8
Zm00001eb049250 Zea mays HOM05D000540 ORTHO05D008105 2.8e-08 62.0 98 40.8
C03p53300 Brassica napus HOM05D000540 ORTHO05D008105 3.6e-08 61.6 86 41.9
MD07G1100000 Malus domestica HOM05D000540 ORTHO05D008105 3.6e-08 61.6 76 43.4
Hund07747 Selenicereus undatus HOM05D000540 ORTHO05D008105 3.6e-08 61.6 90 42.2
AagrBONN_evm.TU.Sc2ySwM_117.3450 Anthoceros agrestis HOM05D000540 ORTHO05D008105 4.8e-08 61.2 77 42.9
MD02G1217700 Malus domestica HOM05D000540 ORTHO05D008105 4.8e-08 61.2 76 43.4
Cre08.g375250 Chlamydomonas reinhardtii HOM05D000540 ORTHO05D009557 8.1e-08 60.5 90 38.9
FvH4_5g23230 Fragaria vesca HOM05D000540 ORTHO05D008105 8.1e-08 60.5 68 45.6
FAN04G1833 Fragaria x ananassa HOM05D000540 ORTHO05D008105 8.1e-08 60.5 68 45.6
FAN18G0695 Fragaria x ananassa HOM05D000540 ORTHO05D008105 8.1e-08 60.5 68 45.6
FAN18G3733 Fragaria x ananassa HOM05D000540 ORTHO05D008105 8.1e-08 60.5 68 45.6
BraSC138t45550Z Brassica rapa HOM05D000540 ORTHO05D009557 1.1e-07 60.1 30 80.0
Manes.07G029100 Manihot esculenta HOM05D000540 ORTHO05D008105 1.4e-07 59.7 69 43.5
RcHm_v2.0_Chr7g0212161 Rosa chinensis HOM05D000540 ORTHO05D008105 1.4e-07 59.7 77 42.9
Sc06g0008940 Simmondsia chinensis HOM05D000540 ORTHO05D008105 1.4e-07 59.7 75 44.0
Eucgr.D00430 Eucalyptus grandis HOM05D000540 ORTHO05D008105 2.4e-07 58.9 92 37.0
FAN08G1475 Fragaria x ananassa HOM05D000540 ORTHO05D008105 2.4e-07 58.9 68 44.1
Ah.08g216160 Amaranthus hybridus HOM05D000540 ORTHO05D008105 3.1e-07 58.5 81 40.7
Nn6g34181 Nelumbo nucifera HOM05D000540 ORTHO05D009557 3.1e-07 58.5 60 50.0
Peaxi162Scf00211g00236 Petunia axillaris HOM05D000540 ORTHO05D000681 3.1e-07 58.5 28 92.9
Aa31LG8G10410 Aethionema arabicum HOM05D000540 ORTHO05D008105 5.3e-07 57.8 93 35.5
AagrBONN_evm.TU.Sc2ySwM_228.180 Anthoceros agrestis HOM05D000540 ORTHO05D008105 5.3e-07 57.8 77 41.6
SGA_v2.0_scaffold123G33382 Striga asiatica HOM05D000540 ORTHO05D400302 5.3e-07 57.8 34 76.5
Mapoly0157s0025 Marchantia polymorpha HOM05D000540 ORTHO05D008105 6.9e-07 57.4 77 44.2
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 9.0e-07 57.0 74 41.9
Nitab4.5_0001153g0100 Nicotiana tabacum HOM05D000540 ORTHO05D008105 9.0e-07 57.0 96 40.6
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 1.5e-06 56.2 59 45.8
MELO3C011310.2 Cucumis melo HOM05D000540 ORTHO05D008105 1.5e-06 56.2 90 37.8
Ciclev10002977m.g Citrus clementina HOM05D000540 ORTHO05D008105 2.0e-06 55.8 75 41.3
CsaV3_2G032570 Cucumis sativus L. HOM05D000540 ORTHO05D008105 5.8e-06 54.3 75 38.7
Lj2A1229G102 Lonicera japonica HOM05D000540 ORTHO05D000681 5.8e-06 54.3 90 36.7
Lalb_Chr10g0097221 Lupinus albus HOM05D000540 ORTHO05D008105 5.8e-06 54.3 86 36.0
Nn1g09992 Nelumbo nucifera HOM05D000540 ORTHO05D008105 5.8e-06 54.3 90 36.7
Nn1g10001 Nelumbo nucifera HOM05D000540 ORTHO05D008105 5.8e-06 54.3 90 36.7
Nn1g10092 Nelumbo nucifera HOM05D000540 ORTHO05D008105 5.8e-06 54.3 90 36.7
SMO358G0711 Selaginella moellendorffii HOM05D000540 ORTHO05D008105 5.8e-06 54.3 59 44.1
Atru.chr1.3246 Acer truncatum HOM05D000540 ORTHO05D008105 7.6e-06 53.9 93 37.6
CANSAT16G0016 Cannabis sativa HOM05D000540 ORTHO05D008105 7.6e-06 53.9 90 36.7
A09p08050 Brassica napus HOM05D000856 ORTHO05D001792 9.9e-06 53.5 75 36.0
Carub.0008s2379 Capsella rubella HOM05D000856 ORTHO05D001792 9.9e-06 53.5 84 38.1
Gorai.005G267300 Gossypium raimondii HOM05D000540 ORTHO05D008105 9.9e-06 53.5 74 39.2
Potri.013G129600 Populus trichocarpa HOM05D000540 ORTHO05D008105 9.9e-06 53.5 69 40.6
Thecc.02G009100 Theobroma cacao HOM05D000540 ORTHO05D008105 9.9e-06 53.5 72 44.4


User provided reference genes

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