Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G072816 Populus trichocarpa HOM05D000054 ORTHO05D002584 6.8e-35 150.6 106 100.0
Potri.011G073241 Populus trichocarpa HOM05D000054 ORTHO05D000171 5.2e-27 124.4 64 93.8
Potri.011G073166 Populus trichocarpa HOM05D000054 ORTHO05D000171 5.2e-19 97.8 64 73.4
Potri.011G072591 Populus trichocarpa HOM05D000054 ORTHO05D000171 8.9e-19 97.1 64 71.9
Potri.011G072941 Populus trichocarpa HOM05D000054 ORTHO05D000171 4.9e-17 91.3 59 74.6
Potri.011G073016 Populus trichocarpa HOM05D000054 ORTHO05D000171 1.6e-15 86.3 64 65.6
Potri.011G073641 Populus trichocarpa HOM05D000054 ORTHO05D010247 7.3e-13 77.4 51 70.6
Potri.011G072641 Populus trichocarpa HOM05D000054 ORTHO05D010247 6.2e-12 74.3 57 63.2
Potri.011G073041 Populus trichocarpa HOM05D000054 ORTHO05D010247 6.2e-12 74.3 50 68.0
BcaC05g27734 Brassica carinata HOM05D000054 ORTHO05D002584 1.7e-09 66.2 60 50.0
C05p37220 Brassica napus HOM05D000054 ORTHO05D000171 1.7e-09 66.2 60 50.0
BolC5t31572H Brassica oleracea HOM05D000054 ORTHO05D000171 1.7e-09 66.2 57 52.6
A05p23740 Brassica napus HOM05D000054 ORTHO05D000171 2.2e-09 65.9 60 50.0
Potri.011G072991 Populus trichocarpa HOM05D000054 ORTHO05D000171 2.2e-09 65.9 70 51.4
Potri.011G075400 Populus trichocarpa HOM05D000054 ORTHO05D000171 1.4e-08 63.2 64 46.9
Carub.0001s2792 Capsella rubella HOM05D000054 ORTHO05D000171 5.4e-08 61.2 56 51.8
Potri.011G073466 Populus trichocarpa HOM05D000054 ORTHO05D000171 5.4e-08 61.2 64 45.3
A02p30390 Brassica napus HOM05D000054 ORTHO05D000171 7.1e-08 60.8 65 46.2
BraA02t08054Z Brassica rapa HOM05D000054 ORTHO05D000171 7.1e-08 60.8 65 46.2
DCAR_013265 Daucus carota HOM05D000054 ORTHO05D002584 7.1e-08 60.8 58 51.7
A07p10310 Brassica napus HOM05D000054 ORTHO05D000171 1.6e-07 59.7 60 46.7
Potri.011G072866 Populus trichocarpa HOM05D000054 ORTHO05D000171 1.6e-07 59.7 63 46.0
Potri.011G073091 Populus trichocarpa HOM05D000054 ORTHO05D000171 1.6e-07 59.7 54 50.0
Potri.011G073700 Populus trichocarpa HOM05D000054 ORTHO05D000171 1.6e-07 59.7 56 48.2
BcaB03g13864 Brassica carinata HOM05D000054 ORTHO05D000171 2.1e-07 59.3 58 50.0
BraA09t39190Z Brassica rapa HOM05D000054 ORTHO05D000171 2.7e-07 58.9 59 42.4
Potri.011G073491 Populus trichocarpa HOM05D000054 ORTHO05D010247 2.7e-07 58.9 56 48.2
Potri.011G072966 Populus trichocarpa HOM05D000054 ORTHO05D000171 3.5e-07 58.5 56 46.4
Potri.011G073416 Populus trichocarpa HOM05D000054 ORTHO05D010247 3.5e-07 58.5 64 43.8
RcHm_v2.0_Chr5g0029891 Rosa chinensis HOM05D000054 ORTHO05D000171 3.5e-07 58.5 56 44.6
BcaC05g26988 Brassica carinata HOM05D000054 ORTHO05D000171 4.6e-07 58.2 59 40.7
C05p28490 Brassica napus HOM05D000054 ORTHO05D000171 4.6e-07 58.2 59 40.7
C07p15870 Brassica napus HOM05D000054 ORTHO05D002584 4.6e-07 58.2 55 49.1
AL1G43570 Arabidopsis lyrata HOM05D000054 ORTHO05D000171 6.0e-07 57.8 54 51.9
BolC7t42073H Brassica oleracea HOM05D000054 ORTHO05D000171 6.0e-07 57.8 60 46.7
BolC7t42080H Brassica oleracea HOM05D000054 ORTHO05D000171 6.0e-07 57.8 55 49.1
Potri.011G072741 Populus trichocarpa HOM05D000054 ORTHO05D000171 6.0e-07 57.8 56 46.4
SalBow8G1032 Salvia bowleyana HOM05D000054 ORTHO05D000171 6.0e-07 57.8 54 50.0
A07p10360 Brassica napus HOM05D000054 ORTHO05D000171 7.8e-07 57.4 59 47.5
A09p36720 Brassica napus HOM05D000054 ORTHO05D000171 7.8e-07 57.4 59 40.7
Lsat_1_v5_gn_7_102060 Lactuca sativa HOM05D000054 ORTHO05D000171 7.8e-07 57.4 57 42.1
RcHm_v2.0_Chr5g0029631 Rosa chinensis HOM05D000054 ORTHO05D000171 7.8e-07 57.4 59 40.7
BcaB07g32557 Brassica carinata HOM05D000054 ORTHO05D000171 1.0e-06 57.0 59 42.4
BraA08t34447Z Brassica rapa HOM05D000054 ORTHO05D000171 1.0e-06 57.0 59 44.1
AT1G29720 Arabidopsis thaliana HOM05D000054 ORTHO05D000171 1.3e-06 56.6 55 47.3
Os08g0203600 Oryza sativa ssp. japonica HOM05D000054 ORTHO05D010039 1.3e-06 56.6 62 43.5
Sc07g0002500 Simmondsia chinensis HOM05D000054 ORTHO05D000171 1.3e-06 56.6 58 43.1
AL1G43550 Arabidopsis lyrata HOM05D000054 ORTHO05D000171 1.7e-06 56.2 53 52.8
AT1G29740 Arabidopsis thaliana HOM05D000054 ORTHO05D000171 1.7e-06 56.2 54 51.9
C07p15820 Brassica napus HOM05D000054 ORTHO05D000171 1.7e-06 56.2 60 46.7
CsaV3_4G032880 Cucumis sativus L. HOM05D000054 ORTHO05D000171 1.7e-06 56.2 61 42.6
Dinv18389 Davidia involucrata HOM05D000054 ORTHO05D000171 1.7e-06 56.2 58 43.1
FAN21G1158 Fragaria x ananassa HOM05D000054 ORTHO05D000171 1.7e-06 56.2 62 40.3
Sed0010313 Sechium edule HOM05D000054 ORTHO05D000171 1.7e-06 56.2 59 52.5
Aqoxy4G00212 Aquilegia oxysepala HOM05D000054 ORTHO05D000171 2.3e-06 55.8 54 44.4
MSTRG.14977 Avicennia marina HOM05D000054 ORTHO05D002584 2.3e-06 55.8 58 43.1
BraA05t21242Z Brassica rapa HOM05D000054 ORTHO05D002584 2.3e-06 55.8 50 50.0
Carub.0001s2795 Capsella rubella HOM05D000054 ORTHO05D000171 2.3e-06 55.8 58 44.8
Glyma.12G233100 Glycine max HOM05D000054 ORTHO05D000171 2.3e-06 55.8 54 42.6
THA.LOC104820630 Tarenaya hassleriana HOM05D000054 ORTHO05D000171 2.3e-06 55.8 56 44.6
GSVIVG01014110001 Vitis vinifera HOM05D000054 ORTHO05D000171 2.3e-06 55.8 56 44.6
GSVIVG01021276001 Vitis vinifera HOM05D000054 ORTHO05D002584 2.3e-06 55.8 59 44.1
CANSAT35G1639 Cannabis sativa HOM05D000054 ORTHO05D000171 3.0e-06 55.5 40 60.0
Nn6g34447 Nelumbo nucifera HOM05D000054 ORTHO05D000171 3.0e-06 55.5 63 41.3
arahy.Tifrunner.gnm1.ann1.ND5IN9 Arachis hypogaea HOM05D000054 ORTHO05D000171 3.9e-06 55.1 64 40.6
BcaB03g13863 Brassica carinata HOM05D000054 ORTHO05D000171 3.9e-06 55.1 65 43.1
BraA07t28831Z Brassica rapa HOM05D000054 ORTHO05D002584 3.9e-06 55.1 62 43.5
DCAR_007946 Daucus carota HOM05D000054 ORTHO05D002584 3.9e-06 55.1 57 43.9
Glyma.13G265800 Glycine max HOM05D000054 ORTHO05D002584 3.9e-06 55.1 57 38.6
GSVIVG01014113001 Vitis vinifera HOM05D000054 ORTHO05D000171 3.9e-06 55.1 55 45.5
Carub.0001s2794 Capsella rubella HOM05D000054 ORTHO05D000171 5.1e-06 54.7 57 49.1
Eucgr.F04178 Eucalyptus grandis HOM05D000054 ORTHO05D000171 5.1e-06 54.7 54 48.1
FAN25G1231 Fragaria x ananassa HOM05D000054 ORTHO05D002584 5.1e-06 54.7 52 44.2
Lj3g0027719 Lotus japonicus HOM05D000054 ORTHO05D000171 5.1e-06 54.7 60 40.0
Prupe.4G157900 Prunus persica HOM05D000054 ORTHO05D000171 5.1e-06 54.7 52 48.1
Sabra16G0253800 Salix brachista HOM05D000054 ORTHO05D000171 5.1e-06 54.7 61 45.9
PGSC0003DMG400028617 Solanum tuberosum HOM05D000054 ORTHO05D000171 5.1e-06 54.7 54 46.3
TWI38G2049 Tripterygium wilfordii HOM05D000054 ORTHO05D000171 5.1e-06 54.7 54 44.4
VMungo1080G0576 Vigna mungo HOM05D000054 ORTHO05D000171 5.1e-06 54.7 64 42.2
GSVIVG01014134001 Vitis vinifera HOM05D000054 ORTHO05D000171 5.1e-06 54.7 54 46.3
GSVIVG01014117001 Vitis vinifera HOM05D000054 ORTHO05D000171 6.6e-06 54.3 56 42.9
GSVIVG01014150001 Vitis vinifera HOM05D000054 ORTHO05D000171 6.6e-06 54.3 54 44.4
EL10Ac4g08399 Beta vulgaris HOM05D000054 ORTHO05D000171 8.6e-06 53.9 57 43.9
C07p15800 Brassica napus HOM05D000054 ORTHO05D000171 8.6e-06 53.9 55 45.5
Cc05_g10840 Coffea canephora HOM05D000054 ORTHO05D000171 8.6e-06 53.9 54 46.3
Glyma.13G266000 Glycine max HOM05D000054 ORTHO05D000171 8.6e-06 53.9 49 40.8
TWI39G0504 Tripterygium wilfordii HOM05D000054 ORTHO05D000171 8.6e-06 53.9 60 41.7
GSVIVG01014147001 Vitis vinifera HOM05D000054 ORTHO05D000171 8.6e-06 53.9 59 42.4


User provided reference genes

Program Settings