Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.3e-130 470.7 450 100.0
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 1.9e-118 430.3 388 95.1
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 6.1e-117 425.2 384 94.8
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.3e-114 417.5 388 91.8
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 7.2e-110 401.7 388 87.6
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 3.1e-105 386.3 388 85.1
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 4.1e-89 332.8 384 77.1
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 7.0e-89 332.0 385 74.8
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 1.6e-88 330.9 384 73.7
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 3.5e-88 329.7 384 81.8
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 2.9e-87 326.6 385 73.8
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 6.5e-87 325.5 387 76.5
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 8.5e-87 325.1 384 81.2
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 1.5e-86 324.3 385 77.1
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 2.5e-86 323.6 382 77.5
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.2e-85 321.2 383 77.0
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.6e-85 320.9 383 76.0
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 2.7e-85 320.1 384 73.4
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 3.6e-85 319.7 386 76.4
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 4.7e-85 319.3 382 74.3
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 1.0e-84 318.2 382 77.5
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 1.8e-84 317.4 383 76.8
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 3.0e-84 316.6 388 79.6
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 5.2e-84 315.8 385 75.3
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 2.0e-83 313.9 388 71.6
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 3.4e-83 313.2 186 82.8
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 2.8e-82 310.1 383 71.8
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 4.8e-82 309.3 383 71.3
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 2.4e-81 307.0 385 82.1
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 1.6e-80 304.3 379 73.4
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.6e-80 304.3 384 76.3
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.6e-80 304.3 356 75.0
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 3.5e-80 303.1 384 76.6
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 4.5e-80 302.8 383 76.0
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 4.5e-80 302.8 383 76.0
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.0e-79 301.6 384 76.3
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 1.7e-79 300.8 383 74.2
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 2.9e-79 300.1 385 73.2
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 5.0e-79 299.3 388 75.0
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 8.6e-79 298.5 382 75.7
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 1.5e-78 297.7 382 75.4
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 1.9e-78 297.4 385 77.4
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 3.3e-78 296.6 386 73.8
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 1.4e-76 291.2 382 68.3
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 2.3e-76 290.4 382 77.7
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 3.0e-76 290.0 382 71.5
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 4.0e-76 289.7 385 71.2
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 8.9e-76 288.5 382 72.8
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 1.2e-75 288.1 382 76.7
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 2.0e-75 287.3 385 72.2
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 4.4e-75 286.2 382 76.4
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 4.4e-75 286.2 385 68.8
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 7.5e-75 285.4 383 74.2
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 6.3e-74 282.3 382 71.2
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 6.3e-74 282.3 382 69.1
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 1.4e-73 281.2 381 67.5
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 2.4e-73 280.4 382 74.3
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 3.2e-73 280.0 320 75.3
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 7.0e-73 278.9 381 71.9
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 9.2e-73 278.5 382 65.7
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 1.2e-72 278.1 385 73.2
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 1.6e-72 277.7 385 71.2
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 2.7e-72 276.9 359 76.0
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 4.5e-72 276.2 320 73.4
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 4.5e-72 276.2 383 77.5
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 1.0e-71 275.0 382 73.3
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 1.3e-71 274.6 382 70.2
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 5.0e-71 272.7 385 71.4
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 5.6e-70 269.2 385 71.7
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 7.3e-70 268.9 384 72.4
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 7.3e-70 268.9 350 72.3
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 7.3e-70 268.9 382 74.6
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 7.3e-70 268.9 386 70.5
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.2e-69 268.1 383 71.3
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 1.2e-69 268.1 371 68.2
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 1.6e-69 267.7 386 67.9
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 4.7e-69 266.2 371 67.9
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 8.0e-69 265.4 386 64.8
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 8.0e-69 265.4 386 72.5
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 1.0e-68 265.0 323 75.5
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.4e-68 264.6 383 69.2
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 1.8e-68 264.2 384 65.4
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 4.0e-68 263.1 382 68.6
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 5.2e-68 262.7 383 69.5
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 2.0e-67 260.8 392 65.1
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 2.0e-67 260.8 320 75.0
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 5.8e-67 259.2 394 72.6
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 2.4e-65 253.8 388 70.4
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 3.2e-65 253.4 385 69.4
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 2.7e-64 250.4 376 70.5
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 4.6e-64 249.6 382 68.3
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 7.8e-64 248.8 384 61.7
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 3.0e-63 246.9 392 68.4
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 5.0e-63 246.1 390 70.8
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 8.6e-63 245.4 382 67.8
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 8.6e-63 245.4 389 68.1
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 5.6e-62 242.7 383 70.8
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 9.5e-62 241.9 396 66.7
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 1.6e-61 241.1 390 72.3
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 1.6e-61 241.1 383 73.4
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 1.6e-61 241.1 369 69.4
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 1.4e-60 238.0 389 73.3
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 3.1e-60 236.9 322 70.2
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 6.8e-60 235.7 396 72.0
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 6.8e-60 235.7 396 72.2
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 1.5e-59 234.6 398 66.1
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 3.4e-59 233.4 398 65.8
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 7.5e-59 232.3 395 71.6
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 3.7e-58 229.9 320 70.9
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 1.9e-57 227.6 394 63.7
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 2.4e-57 227.3 382 68.6
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 3.2e-57 226.9 395 65.8
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 3.2e-57 226.9 395 65.8
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 3.2e-57 226.9 395 65.8
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 7.1e-57 225.7 394 65.5
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 7.1e-57 225.7 394 65.5
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 1.2e-56 224.9 349 65.6
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 3.5e-56 223.4 386 72.0
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 5.1e-55 219.5 388 61.9
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 4.3e-54 216.5 317 66.6
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 7.3e-54 215.7 396 61.6
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 1.6e-53 214.5 384 58.9
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 1.6e-53 214.5 389 64.0
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 1.6e-53 214.5 387 59.9
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 3.2e-49 200.3 390 58.2
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 6.0e-48 196.1 389 57.6
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 5.1e-47 193.0 387 69.3
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 5.1e-47 193.0 387 69.3
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 1.1e-46 191.8 387 69.5
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 1.5e-46 191.4 388 67.5
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 3.6e-45 186.8 371 40.4
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 5.2e-44 183.0 379 67.8
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 6.8e-44 182.6 386 65.8
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 1.2e-43 181.8 328 62.8
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 4.4e-43 179.9 190 56.3
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 2.2e-42 177.6 188 54.8
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 8.4e-42 175.6 370 69.2
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 1.9e-41 174.5 396 61.1
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 4.6e-40 169.9 264 71.6
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 7.3e-38 162.5 285 76.8
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 1.3e-37 161.8 397 59.4
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 1.4e-36 158.3 296 67.2
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 3.1e-36 157.1 125 65.6
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 5.3e-36 156.4 398 61.1
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 1.2e-35 155.2 172 49.4
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 9.9e-35 152.1 330 63.6
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 1.4e-33 148.3 387 40.3
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 2.7e-32 144.1 340 51.2
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 3.5e-32 143.7 389 51.9
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 8.1e-29 132.5 195 43.1
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 7.6e-27 125.9 279 74.9
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 9.9e-27 125.6 196 42.9
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 4.9e-26 123.2 395 48.9
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 9.3e-25 119.0 250 83.2
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 1.6e-24 118.2 192 40.6
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 3.9e-23 113.6 255 70.6
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 3.1e-20 104.0 178 42.7
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 1.6e-16 91.7 120 45.0
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 3.0e-15 87.4 102 64.7
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 1.6e-13 81.6 189 31.7
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 6.2e-13 79.7 84 59.5
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 8.2e-13 79.3 88 56.8
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 2.4e-12 77.8 48 75.0
Cfa019730 Carpinus fangiana HOM05D004193 ORTHO05D004862 5.8e-11 73.2 48 70.8
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 4.2e-09 67.0 94 43.6
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 5.5e-09 66.6 245 55.5
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.2e-08 65.5 85 45.9
HanXRQChr09g0245841 Helianthus annuus HOM05D004193 ORTHO05D004862 3.9e-07 60.5 47 57.4
HanXRQChr09g0243731 Helianthus annuus HOM05D004193 ORTHO05D004862 1.5e-06 58.5 46 56.5


User provided reference genes

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