Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G063500 Populus trichocarpa HOM05D007489 ORTHO05D008037 0.0e+00 1490.7 786 100.0
Sabra11G0045300 Salix brachista HOM05D007489 ORTHO05D008037 0.0e+00 1157.1 772 82.3
Manes.16G035700 Manihot esculenta HOM05D007489 ORTHO05D008037 3.1e-148 530.0 945 42.2
Prupe.4G057700 Prunus persica HOM05D007489 ORTHO05D008037 3.5e-112 410.2 800 40.6
Duzib192G0524 Durio zibethinus HOM05D007489 ORTHO05D008037 1.9e-105 387.9 784 39.2
CSS0034374 Camellia sinensis var. sinensis HOM05D007489 ORTHO05D008037 4.2e-105 386.7 806 38.6
Thecc.06G175600 Theobroma cacao HOM05D007489 ORTHO05D008037 1.6e-104 384.8 787 38.6
Duzib235G0638 Durio zibethinus HOM05D007489 ORTHO05D008037 2.5e-102 377.5 782 37.9
Gohir.D10G031400 Gossypium hirsutum HOM05D007489 ORTHO05D008037 7.4e-102 375.9 789 37.5
Dinv40650 Davidia involucrata HOM05D007489 ORTHO05D008037 4.2e-97 360.1 801 37.7
TAR627G1016 Trochodendron aralioides HOM05D007489 ORTHO05D008037 1.6e-96 358.2 815 37.2
MD10G1283800 Malus domestica HOM05D007489 ORTHO05D008037 7.9e-96 355.9 802 38.4
Gohir.A10G030500 Gossypium hirsutum HOM05D007489 ORTHO05D008037 6.7e-95 352.8 791 36.5
Hma1.2p1_0155F.1_g068400 Hydrangea macrophylla HOM05D007489 ORTHO05D008037 5.7e-94 349.7 805 37.4
Glyma.07G204500 Glycine max HOM05D007489 ORTHO05D008037 8.2e-93 345.9 831 36.3
Haze_06275 Corylus avellana HOM05D007489 ORTHO05D008037 2.4e-92 344.4 806 37.3
Gorai.011G033000 Gossypium raimondii HOM05D007489 ORTHO05D008037 1.0e-90 339.0 789 35.6
RcHm_v2.0_Chr7g0215591 Rosa chinensis HOM05D007489 ORTHO05D008037 2.6e-83 314.3 801 36.5
RcHm_v2.0_Chr7g0216741 Rosa chinensis HOM05D007489 ORTHO05D008037 3.4e-83 313.9 809 36.2
Rhsim02G0140400 Rhododendron simsii HOM05D007489 ORTHO05D008037 4.2e-81 307.0 840 34.8
FvH4_5g26040 Fragaria vesca HOM05D007489 ORTHO05D008037 5.5e-81 306.6 802 35.3
FAN08G0692 Fragaria x ananassa HOM05D007489 ORTHO05D008037 3.6e-80 303.9 824 35.0
FAN04G2784 Fragaria x ananassa HOM05D007489 ORTHO05D008037 2.0e-78 298.1 823 34.9
FAN18G0613 Fragaria x ananassa HOM05D007489 ORTHO05D008037 9.1e-76 289.3 823 33.9
Lj1A1196T41 Lonicera japonica HOM05D007489 ORTHO05D008037 1.5e-75 288.5 757 34.3
arahy.Tifrunner.gnm1.ann1.S0ULK2 Arachis hypogaea HOM05D007489 ORTHO05D008037 8.5e-74 282.7 777 34.2
Medtr4g087875 Medicago truncatula HOM05D007489 ORTHO05D008037 3.2e-73 280.8 798 32.3
TPR.G16271 Trifolium pratense HOM05D007489 ORTHO05D008037 7.4e-70 269.6 799 32.2
Nn1g09012 Nelumbo nucifera HOM05D007489 ORTHO05D008037 4.1e-68 263.8 787 34.2
Phvul.003G057800 Phaseolus vulgaris HOM05D007489 ORTHO05D008037 7.0e-68 263.1 833 32.4
Lj4g0021888 Lotus japonicus HOM05D007489 ORTHO05D008037 5.9e-67 260.0 786 34.1
CiPaw.10G057000 Carya illinoinensis HOM05D007489 ORTHO05D008037 2.2e-66 258.1 474 39.7
ECA234G3308 Erigeron canadensis HOM05D007489 ORTHO05D008037 5.0e-66 256.9 814 32.6
Atru.chr10.1727 Acer truncatum HOM05D007489 ORTHO05D008037 1.9e-65 255.0 340 45.0
PGR004G0633 Punica granatum HOM05D007489 ORTHO05D008037 1.9e-65 255.0 801 32.1
Aqoxy5G02160 Aquilegia oxysepala HOM05D007489 ORTHO05D008037 5.5e-65 253.4 803 31.0
CANSAT54G0123 Cannabis sativa HOM05D007489 ORTHO05D008037 4.7e-64 250.4 866 31.1
FAN13G1982 Fragaria x ananassa HOM05D007489 ORTHO05D008037 1.8e-63 248.4 856 31.7
arahy.Tifrunner.gnm1.ann1.X1E7Z2 Arachis hypogaea HOM05D007489 ORTHO05D008037 5.9e-59 233.4 768 31.5
ClCG01G023550 Citrullus lanatus HOM05D007489 ORTHO05D008037 2.9e-58 231.1 783 30.9
Ca_26049_v3 Cicer arietinum L. HOM05D007489 ORTHO05D008037 2.3e-55 221.5 812 30.2
Sed0003654 Sechium edule HOM05D007489 ORTHO05D008037 5.2e-55 220.3 796 30.5
Sc05g0007220 Simmondsia chinensis HOM05D007489 ORTHO05D008037 8.8e-55 219.5 843 29.9
AL7G35790 Arabidopsis lyrata HOM05D010718 ORTHO05D008037 1.2e-54 219.2 823 30.3
CAN.G79.55 Capsicum annuum HOM05D007489 ORTHO05D008037 1.2e-54 219.2 820 28.0
AT4G18490 Arabidopsis thaliana HOM05D010718 ORTHO05D008037 4.1e-52 210.7 831 29.5
MELO3C007230.2 Cucumis melo HOM05D007489 ORTHO05D008037 7.0e-52 209.9 794 31.0
COL.COLO4_31347 Corchorus olitorius HOM05D007489 ORTHO05D008037 2.7e-51 208.0 887 28.5
Lsat_1_v5_gn_4_50401 Lactuca sativa HOM05D007489 ORTHO05D008037 2.9e-50 204.5 798 30.2
Oeu041109.2 Olea europaea HOM05D007489 ORTHO05D008037 7.2e-49 199.9 904 28.3
CARHR225330 Cardamine hirsuta HOM05D010718 ORTHO05D008037 2.7e-48 198.0 851 28.3
QL05p044409 Quercus lobata HOM05D007489 ORTHO05D008037 5.2e-47 193.7 323 44.0
Aa31LG6G1240 Aethionema arabicum HOM05D010718 ORTHO05D008037 7.5e-46 189.9 802 28.1
Thhalv10024499m.g Eutrema salsugineum HOM05D010718 ORTHO05D008037 7.5e-46 189.9 800 27.1
Sp7g15530 Schrenkiella parvula HOM05D010718 ORTHO05D008037 9.8e-46 189.5 861 27.9
HanXRQChr11g0327141 Helianthus annuus HOM05D007489 ORTHO05D008037 1.7e-45 188.7 786 29.6
GSVIVG01021171001 Vitis vinifera HOM05D007489 ORTHO05D008037 1.7e-45 188.7 350 40.3
Sopen02g022090 Solanum pennellii HOM05D007489 ORTHO05D008037 2.8e-45 188.0 858 27.2
Carub.0007s2274 Capsella rubella HOM05D010718 ORTHO05D008037 4.1e-44 184.1 834 26.7
BcaC06g30581 Brassica carinata HOM05D010718 ORTHO05D008037 1.0e-42 179.5 804 29.2
A03p51330 Brassica napus HOM05D010718 ORTHO05D008037 1.0e-42 179.5 826 28.9
Nitab4.5_0001928g0060 Nicotiana tabacum HOM05D007489 ORTHO05D008037 2.5e-41 174.9 825 26.9
PSO063G1126 Papaver somniferum HOM05D007489 ORTHO05D008037 8.0e-40 169.9 961 26.6
BraA03t14214Z Brassica rapa HOM05D010718 ORTHO05D008037 2.0e-38 165.2 805 28.8
BcaNung02709 Brassica carinata HOM05D010718 ORTHO05D008037 2.2e-37 161.8 811 28.0
BolC7t45475H Brassica oleracea HOM05D010718 ORTHO05D008037 1.2e-35 156.0 803 28.0
EL10Ac8g20488 Beta vulgaris HOM05D007489 ORTHO05D008037 2.0e-35 155.2 791 27.4
A01p10500 Brassica napus HOM05D010718 ORTHO05D008037 1.7e-34 152.1 864 26.6
Migut.J01535 Erythranthe guttata HOM05D007489 ORTHO05D008037 1.7e-34 152.1 773 26.9
C07p49740 Brassica napus HOM05D010718 ORTHO05D008037 8.6e-34 149.8 802 27.6
MBI06_g31402_MAGBIO Magnolia biondii HOM05D007489 ORTHO05D008037 2.5e-33 148.3 628 27.2
Lalb_Chr16g0384211 Lupinus albus HOM05D007489 ORTHO05D008037 1.2e-32 146.0 499 31.3
AUR62036546 Chenopodium quinoa HOM05D007489 ORTHO05D008037 2.8e-32 144.8 797 26.5
CsaV3_6G050690 Cucumis sativus L. HOM05D007489 ORTHO05D008037 8.0e-32 143.3 856 25.8
C01p12440 Brassica napus HOM05D010718 ORTHO05D008037 4.4e-30 137.5 856 25.8
Cpa.g.sc7.37 Carica papaya HOM05D007489 ORTHO05D008037 5.8e-30 137.1 452 29.4
VMungo0251G2273 Vigna mungo HOM05D007489 ORTHO05D008037 2.9e-29 134.8 513 30.0
BraA01t00996Z Brassica rapa HOM05D010718 ORTHO05D008037 3.7e-29 134.4 863 26.4
DCAR_004024 Daucus carota HOM05D007489 ORTHO05D008037 1.4e-28 132.5 342 33.0
Ciclev10017982m.g Citrus clementina HOM05D007489 ORTHO05D008037 4.6e-27 127.5 217 41.0
MD05G1304800 Malus domestica HOM05D007489 ORTHO05D008037 1.1e-25 122.9 528 30.3
BolC1t01218H Brassica oleracea HOM05D010718 ORTHO05D008037 4.3e-25 120.9 868 25.7
Os01g0755100 Oryza sativa ssp. japonica HOM05D007489 ORTHO05D008037 1.5e-22 112.5 789 26.0
SalBow6G6000 Salvia bowleyana HOM05D007489 ORTHO05D008037 3.7e-21 107.8 861 24.3
Glyma.13G171550 Glycine max HOM05D007489 ORTHO05D008037 8.3e-21 106.7 154 44.8
SalBow6G3268 Salvia bowleyana HOM05D007489 ORTHO05D008037 2.4e-20 105.1 851 24.8
Peaxi162Scf00223g01419 Petunia axillaris HOM05D007489 ORTHO05D008037 5.4e-20 104.0 195 37.9
PGR004G2208 Punica granatum HOM05D007489 ORTHO05D008037 7.8e-19 100.1 91 56.0
Solyc02g077210.1 Solanum lycopersicum HOM05D007489 ORTHO05D008037 7.8e-19 100.1 268 31.7
MD05G1304700 Malus domestica HOM05D007489 ORTHO05D008037 1.3e-18 99.4 167 45.5
Hund23951 Selenicereus undatus HOM05D007489 ORTHO05D008037 8.6e-18 96.7 287 30.7
Glyma.13G171600 Glycine max HOM05D007489 ORTHO05D008037 1.9e-17 95.5 251 36.3
Nitab4.5_0000376g0220 Nicotiana tabacum HOM05D007489 ORTHO05D008037 1.2e-16 92.8 435 26.4
ATR0602G208 Amborella trichopoda HOM05D007489 ORTHO05D008037 3.1e-15 88.2 758 23.5
MBI06_g31401_MAGBIO Magnolia biondii HOM05D007489 ORTHO05D008037 3.4e-14 84.7 91 48.4
AUR62031141 Chenopodium quinoa HOM05D007489 ORTHO05D008037 7.6e-14 83.6 760 23.9
Peaxi162Scf00223g01422 Petunia axillaris HOM05D007489 ORTHO05D008037 1.3e-13 82.8 84 53.6
unitig_0.g132 Utricularia gibba HOM05D007489 ORTHO05D008037 4.9e-13 80.9 207 32.4
HPP92_008016 Vanilla planifolia HOM05D007489 ORTHO05D008037 1.4e-12 79.3 171 35.7
HPP92_007965 Vanilla planifolia HOM05D007489 ORTHO05D008037 2.4e-12 78.6 169 34.9
DCAR_007972 Daucus carota HOM05D007489 ORTHO05D008037 2.1e-11 75.5 92 46.7
SalBow2G2687 Salvia bowleyana HOM05D007489 ORTHO05D008037 2.1e-11 75.5 63 52.4
PSO782G2467 Papaver somniferum HOM05D007489 ORTHO05D008037 3.5e-11 74.7 306 30.1
SGA_v2.0_scaffold66G22379 Striga asiatica HOM05D007489 ORTHO05D008037 6.0e-11 73.9 820 23.3
SalBow1G4805 Salvia bowleyana HOM05D007489 ORTHO05D008037 2.3e-10 72.0 63 50.8
Zm00001eb152860 Zea mays HOM05D007489 ORTHO05D008037 2.3e-10 72.0 801 24.5
SEGI_30603 Sequoiadendron giganteum HOM05D007489 ORTHO05D008037 1.5e-09 69.3 133 37.6
QL05p044176 Quercus lobata HOM05D007489 ORTHO05D008037 5.6e-09 67.4 162 39.5
arahy.Tifrunner.gnm1.ann1.8IS92U Arachis hypogaea HOM05D007489 ORTHO05D008037 1.2e-08 66.2 64 54.7
SMO356G0683 Selaginella moellendorffii HOM05D029666 ORTHO05D008037 2.4e-07 62.0 53 52.8
SMO340G0226 Selaginella moellendorffii HOM05D029666 ORTHO05D008037 3.1e-07 61.6 53 52.8


User provided reference genes

Program Settings