Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G051900 Populus trichocarpa HOM05D006133 ORTHO05D007855 1.3e-85 320.1 210 100.0
Potri.004G042800 Populus trichocarpa HOM05D006133 ORTHO05D007855 1.2e-72 276.9 210 75.7
Manes.16G026900 Manihot esculenta HOM05D006133 ORTHO05D007855 1.8e-71 273.1 210 72.4
TWI38G1277 Tripterygium wilfordii HOM05D006133 ORTHO05D007855 5.1e-66 255.0 210 69.0
Thecc.06G188500 Theobroma cacao HOM05D006133 ORTHO05D007855 1.6e-64 250.0 210 65.7
Atru.chr10.1894 Acer truncatum HOM05D006133 ORTHO05D007855 3.1e-63 245.7 210 65.7
CiPaw.09G059200 Carya illinoinensis HOM05D006133 ORTHO05D007855 1.3e-61 240.4 211 66.4
Sabra11G0035700 Salix brachista HOM05D006133 ORTHO05D007855 3.8e-61 238.8 210 83.8
COL.COLO4_31481 Corchorus olitorius HOM05D006133 ORTHO05D007855 8.4e-61 237.7 208 63.5
Dinv40551 Davidia involucrata HOM05D006133 ORTHO05D007855 8.4e-61 237.7 212 64.6
QL05p040164 Quercus lobata HOM05D006133 ORTHO05D007855 2.4e-60 236.1 208 63.9
Haze_06477 Corylus avellana HOM05D006133 ORTHO05D007855 7.1e-60 234.6 213 64.3
Hma1.2p1_0785F.1_g217580 Hydrangea macrophylla HOM05D006133 ORTHO05D007855 1.2e-59 233.8 220 61.4
Gorai.011G027600 Gossypium raimondii HOM05D006133 ORTHO05D007855 4.6e-59 231.9 212 62.3
Lj1A1206T67 Lonicera japonica HOM05D006133 ORTHO05D007855 1.0e-58 230.7 212 62.3
Actinidia05630 Actinidia chinensis HOM05D006133 ORTHO05D007855 3.0e-58 229.2 212 64.6
Gohir.A10G025600 Gossypium hirsutum HOM05D006133 ORTHO05D007855 3.0e-58 229.2 212 61.3
Cfa000437 Carpinus fangiana HOM05D006133 ORTHO05D007855 3.9e-58 228.8 213 63.8
Cpa.g.sc27.45 Carica papaya HOM05D006133 ORTHO05D007855 2.1e-56 223.0 206 60.2
Cc02_g13300 Coffea canephora HOM05D006133 ORTHO05D007855 3.6e-56 222.2 211 59.7
MBI09_g12165_MAGBIO Magnolia biondii HOM05D006133 ORTHO05D007855 1.4e-55 220.3 209 59.3
CSS0047692 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 5.3e-55 218.4 211 60.7
Migut.M01145 Erythranthe guttata HOM05D006133 ORTHO05D007855 5.3e-55 218.4 212 61.8
HanXRQChr16g0517711 Helianthus annuus HOM05D006133 ORTHO05D007855 6.9e-55 218.0 184 74.5
Nitab4.5_0003432g0010 Nicotiana tabacum HOM05D006133 ORTHO05D007855 9.0e-55 217.6 213 60.6
Sc05g0007700 Simmondsia chinensis HOM05D006133 ORTHO05D007855 2.2e-53 213.0 210 59.5
Prupe.4G046300 Prunus persica HOM05D006133 ORTHO05D007855 2.9e-53 212.6 210 59.5
Lsat_1_v5_gn_4_52940 Lactuca sativa HOM05D006133 ORTHO05D007855 3.8e-53 212.2 184 71.2
TAR628G0719 Trochodendron aralioides HOM05D006133 ORTHO05D007855 3.8e-53 212.2 210 58.6
ECA234G2723 Erigeron canadensis HOM05D006133 ORTHO05D007855 4.9e-53 211.8 207 58.0
Nitab4.5_0007940g0050 Nicotiana tabacum HOM05D006133 ORTHO05D007855 6.4e-53 211.5 213 59.2
Glyma.13G179800 Glycine max HOM05D006133 ORTHO05D007855 1.4e-52 210.3 215 59.1
Hund23731 Selenicereus undatus HOM05D006133 ORTHO05D007855 3.2e-52 209.1 211 58.3
RcHm_v2.0_Chr5g0008281 Rosa chinensis HOM05D006133 ORTHO05D007855 4.2e-52 208.8 206 60.2
Phvul.002G234200 Phaseolus vulgaris HOM05D006133 ORTHO05D007855 5.4e-52 208.4 215 57.7
Peaxi162Scf00736g00427 Petunia axillaris HOM05D006133 ORTHO05D007855 9.3e-52 207.6 221 55.2
CSS0042278 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 1.2e-51 207.2 211 59.7
Lj4g0021405 Lotus japonicus HOM05D006133 ORTHO05D007855 1.2e-51 207.2 217 57.1
arahy.Tifrunner.gnm1.ann1.Y5A5WX Arachis hypogaea HOM05D006133 ORTHO05D007855 1.6e-51 206.8 212 61.3
Hund23730 Selenicereus undatus HOM05D006133 ORTHO05D007855 1.6e-51 206.8 211 57.8
Glyma.07G196100 Glycine max HOM05D006133 ORTHO05D007855 2.1e-51 206.5 215 58.6
arahy.Tifrunner.gnm1.ann1.YAJ938 Arachis hypogaea HOM05D006133 ORTHO05D007855 2.7e-51 206.1 224 56.2
FvH4_3g09320 Fragaria vesca HOM05D006133 ORTHO05D007855 3.5e-51 205.7 211 59.2
Oeu057904.1 Olea europaea HOM05D006133 ORTHO05D007855 1.7e-50 203.4 212 57.1
THA.LOC104814218 Tarenaya hassleriana HOM05D006133 ORTHO05D007855 3.0e-50 202.6 210 55.2
VMungo0251G0712 Vigna mungo HOM05D006133 ORTHO05D007855 3.9e-50 202.2 215 56.7
CAN.G1164.26 Capsicum annuum HOM05D006133 ORTHO05D007855 6.6e-50 201.4 213 59.6
AUR62017011 Chenopodium quinoa HOM05D006133 ORTHO05D007855 6.6e-50 201.4 213 57.7
CsaV3_1G012270 Cucumis sativus L. HOM05D006133 ORTHO05D007855 1.5e-49 200.3 210 55.2
PGSC0003DMG400029689 Solanum tuberosum HOM05D006133 ORTHO05D007855 1.9e-49 199.9 213 60.1
MELO3C002599.2 Cucumis melo HOM05D006133 ORTHO05D007855 9.6e-49 197.6 177 60.5
Carub.0004s1546 Capsella rubella HOM05D006133 ORTHO05D007855 1.3e-48 197.2 213 54.0
AUR62014816 Chenopodium quinoa HOM05D006133 ORTHO05D007855 1.3e-48 197.2 213 56.8
FAN16G1924 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.3e-48 197.2 216 56.5
Sopen02g023140 Solanum pennellii HOM05D006133 ORTHO05D007855 1.3e-48 197.2 213 57.7
Duzib235G0895 Durio zibethinus HOM05D006133 ORTHO05D007855 1.6e-48 196.8 169 63.9
ClCG03G006010 Citrullus lanatus HOM05D006133 ORTHO05D007855 2.1e-48 196.4 210 54.3
CARHR127900 Cardamine hirsuta HOM05D006133 ORTHO05D007855 8.1e-48 194.5 213 53.1
AL4G29540 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 6.9e-47 191.4 213 55.9
Nn1g08778 Nelumbo nucifera HOM05D006133 ORTHO05D007855 2.0e-46 189.9 210 52.9
Medtr4g088855 Medicago truncatula HOM05D006133 ORTHO05D007855 3.4e-46 189.1 211 55.0
unitig_22.g6229 Utricularia gibba HOM05D006133 ORTHO05D007855 5.8e-46 188.3 212 54.7
Cc01_g03530 Coffea canephora HOM05D006133 ORTHO05D007855 7.6e-46 188.0 169 60.4
PSO478G5317 Papaver somniferum HOM05D006133 ORTHO05D007855 7.6e-46 188.0 209 53.6
TPR.G12027 Trifolium pratense HOM05D006133 ORTHO05D007855 1.3e-45 187.2 211 55.0
PSO478G1675 Papaver somniferum HOM05D006133 ORTHO05D007855 2.9e-45 186.0 200 53.0
BcaC02g07769 Brassica carinata HOM05D006133 ORTHO05D007855 1.9e-44 183.3 214 51.4
Ah.09g237330 Amaranthus hybridus HOM05D006133 ORTHO05D007855 7.1e-44 181.4 226 51.3
AT2G33793 Arabidopsis thaliana HOM05D006133 ORTHO05D007855 7.1e-44 181.4 213 51.2
BolC4t27810H Brassica oleracea HOM05D006133 ORTHO05D007855 7.1e-44 181.4 215 51.2
Ca_18541_v3 Cicer arietinum L. HOM05D006133 ORTHO05D007855 7.9e-43 177.9 174 59.2
ATR0584G083 Amborella trichopoda HOM05D006133 ORTHO05D007855 3.0e-42 176.0 200 50.0
Gohir.D10G026300 Gossypium hirsutum HOM05D006133 ORTHO05D007855 6.7e-42 174.9 133 71.4
Thhalv10017234m.g Eutrema salsugineum HOM05D006133 ORTHO05D007855 1.9e-41 173.3 210 49.5
CANSAT35G1333 Cannabis sativa HOM05D006133 ORTHO05D007855 4.3e-41 172.2 175 76.6
Dinv07556 Davidia involucrata HOM05D006133 ORTHO05D007855 7.4e-41 171.4 133 71.4
Solyc02g078290.4 Solanum lycopersicum HOM05D006133 ORTHO05D007855 1.4e-39 167.2 134 69.4
Rhsim13G0177600 Rhododendron simsii HOM05D006133 ORTHO05D007855 3.1e-39 166.0 255 46.3
Solyc02g078280.3 Solanum lycopersicum HOM05D006133 ORTHO05D007855 6.9e-39 164.9 170 60.6
CDE04G1633 Ceratophyllum demersum HOM05D006133 ORTHO05D007855 3.4e-38 162.5 211 48.3
PGR004G1018 Punica granatum HOM05D006133 ORTHO05D007855 4.5e-38 162.2 214 67.3
MD05G1313300 Malus domestica HOM05D006133 ORTHO05D007855 2.2e-37 159.8 130 66.9
Sp4g16180 Schrenkiella parvula HOM05D006133 ORTHO05D007855 8.4e-37 157.9 210 49.5
BraA04t18104Z Brassica rapa HOM05D006133 ORTHO05D007855 2.7e-35 152.9 206 47.1
Ciclev10017918m.g Citrus clementina HOM05D006133 ORTHO05D007855 4.6e-35 152.1 145 59.3
A04p26010 Brassica napus HOM05D006133 ORTHO05D007855 1.1e-33 147.5 216 44.9
GSVIVG01033625001 Vitis vinifera HOM05D006133 ORTHO05D007855 1.1e-33 147.5 169 71.6
SMO353G0258 Selaginella moellendorffii HOM05D006133 ORTHO05D007855 1.5e-33 147.1 170 47.1
SGA_v2.0_scaffold22G09717 Striga asiatica HOM05D006133 ORTHO05D007855 1.5e-33 147.1 216 56.9
C04p63360 Brassica napus HOM05D006133 ORTHO05D007855 2.5e-33 146.4 202 45.5
FAN11G1298 Fragaria x ananassa HOM05D006133 ORTHO05D007855 2.5e-33 146.4 156 54.5
Os03g0837800 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 1.3e-32 144.1 184 45.1
EL10Ac8g20377 Beta vulgaris HOM05D006133 ORTHO05D007855 2.1e-32 143.3 146 55.5
FAN25G2154 Fragaria x ananassa HOM05D006133 ORTHO05D007855 3.7e-32 142.5 146 54.8
Zm00001eb063880 Zea mays HOM05D006133 ORTHO05D007855 4.8e-32 142.1 182 44.5
Psat7g113640 Pisum sativum HOM05D006133 ORTHO05D007855 1.4e-31 140.6 214 45.3
FAN21G1061 Fragaria x ananassa HOM05D006133 ORTHO05D007855 3.1e-31 139.4 144 54.9
AagrBONN_evm.TU.Sc2ySwM_228.202 Anthoceros agrestis HOM05D006133 ORTHO05D007855 5.3e-31 138.7 208 38.0
Sed0025328 Sechium edule HOM05D006133 ORTHO05D007855 5.8e-30 135.2 133 58.6
Cpa.g.sc39.10 Carica papaya HOM05D006133 ORTHO05D007855 3.8e-29 132.5 131 58.8
Lalb_Chr05g0218461 Lupinus albus HOM05D006133 ORTHO05D007855 3.8e-29 132.5 208 61.1
C04p15330 Brassica napus HOM05D006133 ORTHO05D007855 1.4e-28 130.6 150 51.3
BolC4t23106H Brassica oleracea HOM05D006133 ORTHO05D007855 1.4e-28 130.6 172 47.7
BcaC02g11457 Brassica carinata HOM05D006133 ORTHO05D007855 3.5e-27 125.9 150 50.7
DCAR_028075 Daucus carota HOM05D006133 ORTHO05D007855 5.1e-26 122.1 210 44.8
Cc01_g03500 Coffea canephora HOM05D006133 ORTHO05D007855 2.8e-24 116.3 213 41.3
Mapoly0103s0052 Marchantia polymorpha HOM05D006133 ORTHO05D007855 1.7e-21 107.1 178 34.3
Gohir.A01G166500 Gossypium hirsutum HOM05D006133 ORTHO05D007855 6.1e-19 98.6 88 63.6
HPP92_006840 Vanilla planifolia HOM05D006133 ORTHO05D007855 2.3e-18 96.7 100 60.0
SGA_v2.0_scaffold499G52489 Striga asiatica HOM05D006133 ORTHO05D007855 5.7e-17 92.0 206 36.9
Zm00001eb304600 Zea mays HOM05D006133 ORTHO05D007855 4.8e-16 89.0 153 34.0
Gohir.A11G286823 Gossypium hirsutum HOM05D006133 ORTHO05D007855 5.3e-15 85.5 73 67.1
Os07g0256300 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 1.5e-14 84.0 128 38.3
AL4G11580 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 5.0e-13 79.0 211 33.2
Os07g0208801 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 4.2e-12 75.9 65 55.4
BcaB02g10593 Brassica carinata HOM05D006133 ORTHO05D007855 6.7e-10 68.6 101 42.6
Prupe.4G042300 Prunus persica HOM05D006133 ORTHO05D007855 2.2e-08 63.5 51 68.6
C04p15300 Brassica napus HOM05D006133 ORTHO05D007855 2.8e-08 63.2 42 78.6
Zm00001eb131680 Zea mays HOM05D006133 ORTHO05D446205 2.8e-08 63.2 66 48.5
Zm00001eb225310 Zea mays HOM05D000901 ORTHO05D005921 2.8e-08 63.2 66 48.5
HPP92_006839 Vanilla planifolia HOM05D006133 ORTHO05D007855 7.0e-07 58.5 39 71.8


User provided reference genes

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