Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 0.0e+00 1719.9 895 100.0
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 0.0e+00 1575.8 912 91.6
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 0.0e+00 1393.3 909 83.3
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 0.0e+00 1136.7 910 69.0
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 0.0e+00 1124.8 911 68.3
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 0.0e+00 1124.0 787 78.7
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 6.5e-288 994.2 911 62.6
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 3.3e-284 981.9 901 62.6
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 7.0e-282 974.2 912 62.2
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 1.7e-280 969.5 943 61.5
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 5.2e-277 958.0 927 60.7
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 3.0e-269 932.2 910 60.1
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.8e-266 922.9 920 59.7
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 2.4e-266 922.5 925 60.9
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 4.5e-265 918.3 969 57.7
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.7e-264 916.4 912 60.3
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 4.2e-263 911.8 789 65.4
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 1.8e-261 906.4 928 58.3
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.0e-256 890.6 918 59.9
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 1.9e-255 886.3 922 57.3
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 4.3e-255 885.2 915 58.6
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 5.6e-255 884.8 897 59.2
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.0e-253 880.6 928 57.9
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 3.9e-248 862.1 920 57.0
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 5.0e-248 861.7 1001 53.3
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 1.8e-245 853.2 908 58.1
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 4.4e-244 848.6 928 56.2
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 4.4e-244 848.6 944 55.0
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 2.9e-243 845.9 911 55.9
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 2.9e-243 845.9 950 55.7
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 3.7e-243 845.5 910 55.8
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 4.9e-243 845.1 949 55.8
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 1.1e-242 844.0 1041 53.8
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.2e-241 840.5 929 56.8
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 2.3e-240 836.3 905 58.0
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 4.3e-239 832.0 954 54.5
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.2e-238 830.5 806 59.7
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 4.7e-238 828.6 741 62.8
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 4.7e-238 828.6 924 55.7
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.8e-237 826.6 926 55.9
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 2.3e-237 826.2 911 55.3
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 3.1e-237 825.9 902 56.7
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 4.0e-237 825.5 956 54.3
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.2e-236 823.9 985 52.3
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 2.0e-236 823.2 914 56.2
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.4e-236 822.4 988 51.8
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 5.8e-236 821.6 820 58.5
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 7.5e-236 821.2 819 57.4
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.7e-235 820.1 928 55.2
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 4.9e-235 818.5 988 52.1
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 8.3e-235 817.8 933 54.4
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 4.1e-234 815.5 978 51.6
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 5.4e-234 815.1 987 52.4
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 9.2e-234 814.3 996 52.7
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 1.6e-233 813.5 916 55.3
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 1.6e-233 813.5 958 52.7
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 3.5e-233 812.4 899 56.1
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 1.3e-232 810.4 916 55.1
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.7e-232 810.1 988 51.9
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.5e-231 807.0 955 52.7
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 4.3e-231 805.4 954 52.4
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 2.4e-229 799.7 925 52.1
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 1.5e-228 797.0 924 53.2
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 2.6e-228 796.2 997 51.5
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 2.6e-228 796.2 1101 47.4
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 5.4e-226 788.5 950 52.0
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 1.0e-224 784.3 980 51.0
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 2.3e-224 783.1 905 54.6
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 2.6e-220 769.6 913 53.9
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 1.3e-219 767.3 908 52.0
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 7.1e-218 761.5 1021 49.8
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 6.0e-217 758.4 795 55.5
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 3.0e-216 756.1 904 51.7
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 2.5e-215 753.1 920 50.4
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 9.6e-215 751.1 983 50.4
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 3.6e-214 749.2 904 52.0
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 1.8e-213 746.9 926 51.1
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 3.4e-212 742.7 782 55.4
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 1.7e-211 740.3 903 50.7
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 2.2e-211 740.0 897 50.2
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 2.2e-211 740.0 897 50.2
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 2.9e-211 739.6 912 53.2
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 2.9e-211 739.6 910 50.3
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 3.8e-211 739.2 819 54.2
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.9e-210 736.9 930 50.4
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 2.4e-210 736.5 905 50.5
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 3.2e-210 736.1 822 53.6
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 3.2e-210 736.1 824 54.4
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 3.2e-210 736.1 1020 47.2
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 5.4e-210 735.3 905 50.6
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 7.1e-210 734.9 905 49.9
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 7.1e-210 734.9 906 51.3
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 8.7e-208 728.0 1017 47.0
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 1.5e-207 727.2 903 50.6
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 7.4e-207 724.9 899 50.3
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 1.3e-206 724.2 924 49.8
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 2.1e-206 723.4 934 49.9
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 4.9e-203 712.2 900 48.8
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 1.1e-202 711.1 963 47.6
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 3.2e-202 709.5 971 47.9
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 1.2e-201 707.6 899 49.4
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 7.9e-201 704.9 961 48.2
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 1.6e-198 697.2 848 50.5
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 3.7e-198 696.0 910 48.8
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 6.2e-198 695.3 897 49.2
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 1.2e-196 691.0 875 48.2
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 5.8e-196 688.7 944 48.8
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 1.1e-194 684.5 922 47.9
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 1.4e-194 684.1 936 48.0
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 1.4e-194 684.1 847 49.6
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 5.5e-194 682.2 892 48.3
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 6.1e-193 678.7 887 49.7
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 3.9e-192 676.0 844 50.4
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 6.7e-192 675.2 784 51.9
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 8.7e-192 674.9 859 49.9
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 9.7e-191 671.4 809 51.7
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 7.7e-188 661.8 824 49.8
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.0e-187 661.4 824 49.8
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 1.7e-187 660.6 927 50.2
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 6.5e-187 658.7 927 47.4
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 4.2e-186 656.0 925 49.0
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 7.9e-185 651.7 894 48.0
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 2.9e-179 633.3 770 50.5
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 3.9e-176 622.9 945 44.9
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 2.4e-165 587.0 936 44.1
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 2.4e-157 560.5 812 43.5
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 3.2e-154 550.1 914 40.6
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 2.6e-135 487.3 814 42.0
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 8.3e-134 482.3 846 40.5
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 1.7e-118 431.4 888 36.4
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 2.9e-118 430.6 378 65.6
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 3.6e-113 413.7 966 36.2
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 3.6e-113 413.7 966 36.2
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.4e-112 411.8 534 48.9
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 2.0e-111 407.9 779 37.7
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 5.6e-106 389.8 671 39.8
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 6.0e-100 369.8 339 60.5
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 4.9e-86 323.6 493 45.0
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 6.5e-86 323.2 289 59.9
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 5.1e-83 313.5 327 57.5
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 9.3e-77 292.7 385 49.9
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 2.4e-72 278.1 957 28.5
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 1.9e-69 268.5 251 59.8
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 3.6e-68 264.2 390 46.9
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 1.7e-62 245.4 141 90.1
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 3.8e-54 217.6 270 46.7
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 4.4e-50 204.1 477 36.5
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.2e-39 169.5 193 53.4
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 2.0e-39 168.7 223 48.9
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 2.1e-36 158.7 173 53.2
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.4e-35 156.0 145 64.8
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 1.8e-32 145.6 192 44.3
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 7.7e-31 140.2 209 46.9
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 6.6e-30 137.1 156 47.4
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 1.9e-29 135.6 88 77.3
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 6.8e-27 127.1 148 48.6
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 3.7e-25 121.3 79 77.2
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 1.6e-20 105.9 115 52.2
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 2.1e-20 105.5 73 72.6
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 1.0e-19 103.2 89 59.6
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 6.8e-19 100.5 118 46.6
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 1.5e-18 99.4 88 60.2
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 2.0e-18 99.0 93 57.0
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 4.4e-18 97.8 89 57.3
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 9.8e-18 96.7 57 84.2
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 3.7e-17 94.7 63 74.6
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 6.4e-17 94.0 99 54.5
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 3.2e-16 91.7 92 57.6
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 7.0e-16 90.5 59 83.1
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 6.0e-15 87.4 59 69.5
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 2.3e-14 85.5 69 63.8
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 2.1e-12 79.0 91 47.3
SHI01815 Sapria himalayana HOM05D003782 ORTHO05D004361 2.1e-12 79.0 215 34.4
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 2.3e-11 75.5 130 36.9
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 4.0e-11 74.7 123 37.4
CSS0040150 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 5.2e-11 74.3 67 58.2
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 5.2e-11 74.3 126 40.5
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 1.3e-09 69.7 44 79.5
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 1.7e-09 69.3 66 51.5
CSS0046083 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 6.4e-09 67.4 146 43.2
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 8.3e-09 67.0 60 56.7
MCO02G174 Micromonas commoda HOM05D003782 ORTHO05D004361 3.5e-07 61.6 332 25.0
Zm00001eb274810 Zea mays HOM05D003782 ORTHO05D004361 3.5e-07 61.6 62 50.0
MBI19_g13594_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 1.7e-06 59.3 59 44.1
COL.COLO4_08259 Corchorus olitorius HOM05D000149 ORTHO05D000076 2.3e-06 58.9 50 62.0


User provided reference genes

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