Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 1.4e-160 569.7 316 100.0
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 4.5e-127 458.4 320 80.6
Potri.004G037100 Populus trichocarpa HOM05D004441 ORTHO05D003109 8.0e-108 394.4 321 77.3
Sabra04G0022600 Salix brachista HOM05D004441 ORTHO05D003109 2.3e-99 366.3 320 72.8
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 1.0e-57 228.0 334 56.3
Manes.16G023200 Manihot esculenta HOM05D004441 ORTHO05D003109 2.9e-49 199.9 338 52.4
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 4.6e-47 192.6 328 47.6
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 2.3e-46 190.3 340 47.4
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 3.0e-46 189.9 318 46.5
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 4.3e-45 186.0 327 46.8
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 9.7e-45 184.9 328 46.3
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 9.1e-43 178.3 332 45.8
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.2e-42 177.9 332 45.8
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 4.5e-42 176.0 331 45.6
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.6e-39 167.5 319 46.1
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 2.1e-39 167.2 319 45.8
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.7e-39 166.8 332 44.9
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 5.1e-38 162.5 319 45.1
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 1.8e-35 154.1 346 42.8
Atru.chr10.1971 Acer truncatum HOM05D004441 ORTHO05D003109 2.5e-32 143.7 308 47.1
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 8.0e-31 138.7 328 40.5
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 3.0e-30 136.7 351 39.0
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 5.2e-30 136.0 333 40.8
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 8.8e-30 135.2 330 40.9
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 2.2e-28 130.6 335 43.6
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 1.4e-27 127.9 322 41.0
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 4.1e-27 126.3 328 40.2
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 5.3e-27 125.9 328 39.3
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 7.0e-27 125.6 338 39.9
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 9.1e-27 125.2 338 39.6
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 1.2e-26 124.8 327 41.3
Ciclev10015894m.g Citrus clementina HOM05D004441 ORTHO05D003109 1.2e-26 124.8 363 37.7
ClCG03G005640 Citrullus lanatus HOM05D004441 ORTHO05D003109 1.6e-26 124.4 327 37.3
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 1.6e-26 124.4 327 38.2
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 1.6e-26 124.4 327 38.2
Cpa.g.sc27.93 Carica papaya HOM05D004441 ORTHO05D003109 4.5e-26 122.9 324 42.3
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 1.0e-25 121.7 334 39.5
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.0e-25 121.7 335 40.0
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 1.1e-24 118.2 324 40.4
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 1.5e-24 117.9 331 39.3
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 1.9e-24 117.5 348 36.8
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 3.2e-24 116.7 327 37.9
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 7.2e-24 115.5 327 40.4
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 1.8e-22 110.9 332 38.0
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 8.8e-22 108.6 345 33.6
Cfa000385 Carpinus fangiana HOM05D004441 ORTHO05D003109 1.5e-21 107.8 340 38.2
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.3e-20 104.8 329 37.4
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 2.2e-20 104.0 294 36.4
Dinv39787 Davidia involucrata HOM05D004441 ORTHO05D003109 6.3e-20 102.4 330 39.4
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 8.3e-20 102.1 337 34.7
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 1.8e-19 100.9 325 36.9
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 2.4e-19 100.5 218 46.8
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 2.4e-19 100.5 325 36.3
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 4.1e-19 99.8 362 35.4
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 7.0e-19 99.0 327 36.7
Haze_06542 Corylus avellana HOM05D004441 ORTHO05D003109 3.5e-18 96.7 340 36.2
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 6.5e-17 92.4 359 33.7
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 6.5e-17 92.4 323 37.5
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 6.5e-17 92.4 323 37.5
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 2.5e-16 90.5 322 34.2
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 2.5e-16 90.5 208 40.9
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 3.2e-16 90.1 340 35.6
BcaC02g10584 Brassica carinata HOM05D004441 ORTHO05D003109 5.5e-16 89.4 334 33.2
C04p27200 Brassica napus HOM05D004441 ORTHO05D003109 5.5e-16 89.4 334 33.2
BolC4t24251H Brassica oleracea HOM05D004441 ORTHO05D003109 5.5e-16 89.4 334 33.2
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 7.2e-16 89.0 297 37.0
A01p29970 Brassica napus HOM05D004441 ORTHO05D003109 3.6e-15 86.7 212 40.1
BcaB04g20321 Brassica carinata HOM05D004441 ORTHO05D003109 8.0e-15 85.5 214 39.7
ClCG00G003130 Citrullus lanatus HOM05D004441 ORTHO05D003109 8.0e-15 85.5 332 33.1
ClCG01G022730 Citrullus lanatus HOM05D004441 ORTHO05D003109 8.0e-15 85.5 332 33.1
THA.LOC104809557 Tarenaya hassleriana HOM05D004441 ORTHO05D003109 1.0e-14 85.1 335 33.1
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 1.4e-14 84.7 322 33.9
Thhalv10023654m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 4.0e-14 83.2 250 35.2
Oeu026007.1 Olea europaea HOM05D004441 ORTHO05D003109 4.0e-14 83.2 325 35.7
AL1G22120 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 6.8e-14 82.4 214 39.3
MELO3C007307.2 Cucumis melo HOM05D004441 ORTHO05D003109 6.8e-14 82.4 335 32.8
Lsat_1_v5_gn_7_20000 Lactuca sativa HOM05D004441 ORTHO05D003109 6.8e-14 82.4 333 36.9
Psat0s2678g0120 Pisum sativum HOM05D004441 ORTHO05D003109 8.8e-14 82.0 333 33.6
Sed0025630 Sechium edule HOM05D004441 ORTHO05D003109 8.8e-14 82.0 289 33.9
BraA06t23983Z Brassica rapa HOM05D004441 ORTHO05D003109 1.2e-13 81.6 345 33.0
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 1.2e-13 81.6 336 35.1
AL2G15180 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 1.5e-13 81.3 296 35.1
BraA01t03127Z Brassica rapa HOM05D004441 ORTHO05D003109 1.5e-13 81.3 292 34.6
CsaV3_6G049880 Cucumis sativus L. HOM05D004441 ORTHO05D003109 1.5e-13 81.3 332 33.7
Sp2g03290 Schrenkiella parvula HOM05D004441 ORTHO05D003109 2.0e-13 80.9 328 33.5
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 3.4e-13 80.1 331 37.8
BcaC09g49327 Brassica carinata HOM05D004441 ORTHO05D003109 4.4e-13 79.7 292 34.2
A06p07830 Brassica napus HOM05D004441 ORTHO05D003109 4.4e-13 79.7 346 32.7
C01p37890 Brassica napus HOM05D004441 ORTHO05D003109 4.4e-13 79.7 292 34.2
BolC1t03749H Brassica oleracea HOM05D004441 ORTHO05D003109 4.4e-13 79.7 292 34.2
Carub.0002s0400 Capsella rubella HOM05D004441 ORTHO05D003109 4.4e-13 79.7 295 36.3
Sp1g09810 Schrenkiella parvula HOM05D004441 ORTHO05D003109 2.2e-12 77.4 338 34.3
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 2.2e-12 77.4 324 34.0
A03p66730 Brassica napus HOM05D004441 ORTHO05D003109 3.7e-12 76.6 334 33.5
BraA01t02809Z Brassica rapa HOM05D004441 ORTHO05D003109 3.7e-12 76.6 334 33.5
AT1G61170 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 4.9e-12 76.3 293 33.4
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 4.9e-12 76.3 341 33.1
QL08p037640 Quercus lobata HOM05D010652 ORTHO05D003109 4.9e-12 76.3 353 36.5
Aa31LG2G9430 Aethionema arabicum HOM05D004441 ORTHO05D003109 1.4e-11 74.7 309 31.7
PGSC0003DMG400022372 Solanum tuberosum HOM05D004441 ORTHO05D003109 1.4e-11 74.7 284 35.9
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 1.8e-11 74.3 331 37.2
Carub.0001s1070 Capsella rubella HOM05D004441 ORTHO05D003109 1.8e-11 74.3 209 37.8
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 1.8e-11 74.3 343 35.9
Lalb_Chr18g0059831 Lupinus albus HOM05D004441 ORTHO05D003109 1.8e-11 74.3 331 33.5
Eucgr.D00694 Eucalyptus grandis HOM05D004441 ORTHO05D003109 2.4e-11 73.9 337 33.8
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 2.4e-11 73.9 349 32.4
Lsat_1_v5_gn_4_55461 Lactuca sativa HOM05D004441 ORTHO05D003109 3.1e-11 73.6 338 32.0
VMungo0251G2507 Vigna mungo HOM05D004441 ORTHO05D003109 3.1e-11 73.6 320 31.9
CARHR051480 Cardamine hirsuta HOM05D004441 ORTHO05D003109 4.1e-11 73.2 318 33.6
Hma1.2p1_0835F.1_g225850 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 4.1e-11 73.2 323 31.9
Hma1.2p1_0835F.1_g225855 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 4.1e-11 73.2 323 31.9
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 5.4e-11 72.8 359 32.9
C05p09410 Brassica napus HOM05D004441 ORTHO05D003109 9.1e-11 72.0 213 38.0
BolC5t29682H Brassica oleracea HOM05D004441 ORTHO05D003109 9.1e-11 72.0 213 38.0
Sopen02g023590 Solanum pennellii HOM05D004441 ORTHO05D003109 9.1e-11 72.0 325 32.9
PSO541G1557 Papaver somniferum HOM05D004441 ORTHO05D003109 2.0e-10 70.9 352 32.4
AT1G11125 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 2.7e-10 70.5 185 40.5
Dinv23691 Davidia involucrata HOM05D009304 ORTHO05D003109 3.5e-10 70.1 304 34.2
Phvul.002G224300 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 4.5e-10 69.7 327 31.5
Cpa.g.sc34.119 Carica papaya HOM05D004441 ORTHO05D003109 7.7e-10 68.9 328 37.5
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 1.7e-09 67.8 345 31.3
BcaC06g31839 Brassica carinata HOM05D004441 ORTHO05D003109 2.3e-09 67.4 280 31.8
Glyma.13G184100 Glycine max HOM05D004441 ORTHO05D003109 3.8e-09 66.6 336 32.1
MBI18_g13205_MAGBIO Magnolia biondii HOM05D004441 ORTHO05D003109 3.8e-09 66.6 183 40.4
Nn1g06687 Nelumbo nucifera HOM05D004441 ORTHO05D003109 5.0e-09 66.2 97 49.5
Lsat_1_v5_gn_4_70241 Lactuca sativa HOM05D009304 ORTHO05D003109 1.1e-08 65.1 337 32.0
Peaxi162Scf00612g00043 Petunia axillaris HOM05D004441 ORTHO05D003109 1.9e-08 64.3 324 31.8
Lalb_Chr19g0135401 Lupinus albus HOM05D010177 ORTHO05D003109 4.2e-08 63.2 338 32.2
PGR042G0321 Punica granatum HOM05D004441 ORTHO05D003109 5.6e-08 62.8 331 31.1
Ah.09g235850 Amaranthus hybridus HOM05D004441 ORTHO05D003109 9.5e-08 62.0 328 32.9
ECA234G2831 Erigeron canadensis HOM05D004441 ORTHO05D003109 1.2e-07 61.6 343 31.8
Migut.M01162 Erythranthe guttata HOM05D004441 ORTHO05D003109 1.2e-07 61.6 331 29.3
PGR042G3342 Punica granatum HOM05D004441 ORTHO05D003109 1.2e-07 61.6 332 33.1
Oeu029188.1 Olea europaea HOM05D004441 ORTHO05D003109 1.6e-07 61.2 324 30.6
Actinidia05598 Actinidia chinensis HOM05D004441 ORTHO05D003109 2.8e-07 60.5 241 33.6
Sopen03g002610 Solanum pennellii HOM05D021131 ORTHO05D022971 2.8e-07 60.5 106 43.4
CANSAT35G1057 Cannabis sativa HOM05D004441 ORTHO05D003109 3.6e-07 60.1 176 42.6
FvH4_6g44980 Fragaria vesca HOM05D010652 ORTHO05D003109 3.6e-07 60.1 356 30.6
Cfa014564 Carpinus fangiana HOM05D010652 ORTHO05D003109 4.7e-07 59.7 347 34.0
Sed0024673 Sechium edule HOM05D004441 ORTHO05D003109 4.7e-07 59.7 151 41.1
Dinv01395 Davidia involucrata HOM05D009304 ORTHO05D003109 6.1e-07 59.3 272 33.8
Medtr4g089190 Medicago truncatula HOM05D004441 ORTHO05D003109 6.1e-07 59.3 327 32.4
Ca_01527_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 8.0e-07 58.9 318 29.6
Nitab4.5_0003018g0090 Nicotiana tabacum HOM05D009304 ORTHO05D003109 8.0e-07 58.9 331 32.6
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 1.0e-06 58.5 297 35.7
Peaxi162Scf00007g00287 Petunia axillaris HOM05D009304 ORTHO05D003109 1.0e-06 58.5 287 33.4
Solyc07g054560.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 1.0e-06 58.5 332 30.4
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 1.8e-06 57.8 293 34.5
Lj3g0011122 Lotus japonicus HOM05D010177 ORTHO05D003109 3.0e-06 57.0 342 30.4
Manes.13G149800 Manihot esculenta HOM05D010652 ORTHO05D003109 6.8e-06 55.8 331 33.8
Haze_13109 Corylus avellana HOM05D010652 ORTHO05D003109 8.9e-06 55.5 330 32.7
Glyma.12G108500 Glycine max HOM05D010177 ORTHO05D003109 8.9e-06 55.5 332 34.6


User provided reference genes

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