Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 8.9e-108 393.7 205 100.0
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 2.1e-77 292.7 198 81.8
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 2.3e-71 272.7 197 77.7
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 2.0e-67 259.6 140 97.1
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 5.1e-63 245.0 197 72.1
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 4.2e-57 225.3 200 65.5
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 1.6e-56 223.4 211 62.6
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 4.8e-53 211.8 191 65.4
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 2.4e-52 209.5 190 64.2
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 9.1e-52 207.6 215 60.5
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 1.2e-51 207.2 190 63.7
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 3.4e-51 205.7 191 63.9
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 1.1e-49 200.7 214 58.4
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 1.4e-49 200.3 193 64.2
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 3.2e-49 199.1 197 57.9
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 3.2e-49 199.1 194 63.4
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 3.2e-49 199.1 194 60.3
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 5.5e-49 198.4 195 62.1
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 1.4e-47 193.7 201 57.2
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 8.8e-47 191.0 190 61.6
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 2.6e-46 189.5 196 60.2
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 4.4e-46 188.7 199 59.8
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 7.4e-46 188.0 195 60.0
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 7.4e-46 188.0 193 59.6
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 2.2e-45 186.4 213 58.2
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.8e-45 186.0 192 58.3
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.8e-45 186.0 197 56.3
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 6.3e-45 184.9 195 59.0
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 8.2e-45 184.5 194 56.7
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 8.2e-45 184.5 197 56.3
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 8.2e-45 184.5 203 55.2
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.4e-44 183.7 195 56.9
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.8e-44 183.3 195 56.4
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 3.1e-44 182.6 201 56.2
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 4.5e-43 178.7 197 56.9
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 7.7e-43 177.9 200 58.0
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 7.7e-43 177.9 177 59.9
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 1.7e-42 176.8 190 56.3
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 2.2e-42 176.4 190 56.8
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 6.5e-42 174.9 199 56.3
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 8.5e-42 174.5 194 57.7
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 1.9e-41 173.3 196 54.6
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 2.3e-39 166.4 194 53.6
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 3.9e-39 165.6 198 56.1
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 5.2e-39 165.2 202 54.5
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 1.5e-38 163.7 208 53.4
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 7.4e-38 161.4 193 52.8
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 7.4e-38 161.4 190 54.7
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 9.7e-38 161.0 190 54.2
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 1.3e-37 160.6 192 53.1
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.8e-37 159.5 209 50.2
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 8.2e-37 157.9 190 51.1
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 1.4e-36 157.1 183 54.1
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 1.8e-36 156.8 198 53.0
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 3.1e-36 156.0 186 52.2
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 9.1e-36 154.5 214 47.2
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.6e-35 153.7 169 59.2
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 5.9e-35 151.8 210 54.3
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 1.0e-34 151.0 205 49.8
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 3.8e-34 149.1 192 50.5
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 5.0e-34 148.7 210 49.5
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 5.0e-34 148.7 210 49.5
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 6.5e-34 148.3 185 51.4
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 6.5e-34 148.3 201 50.2
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 6.5e-34 148.3 187 52.9
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 6.5e-34 148.3 187 52.9
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 8.5e-34 147.9 187 50.8
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 2.5e-33 146.4 187 50.8
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 3.2e-33 146.0 182 50.5
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 3.2e-33 146.0 197 52.3
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 3.2e-33 146.0 200 51.5
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 7.2e-33 144.8 193 49.2
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 9.4e-33 144.4 204 52.0
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 6.1e-32 141.7 209 47.4
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 8.0e-32 141.4 176 52.8
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 2.3e-31 139.8 170 55.3
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 2.3e-31 139.8 197 50.8
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 2.0e-30 136.7 206 46.6
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.6e-30 136.3 210 49.0
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 4.4e-30 135.6 199 48.7
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 4.4e-30 135.6 191 46.6
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 4.8e-29 132.1 204 47.1
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.4e-28 130.6 190 46.8
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.8e-28 130.2 192 47.4
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 7.0e-28 128.3 178 48.9
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 9.1e-28 127.9 190 46.8
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 2.0e-27 126.7 186 45.7
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 2.0e-27 126.7 155 53.5
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 3.5e-27 125.9 194 44.8
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 4.5e-27 125.6 193 43.5
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 7.7e-27 124.8 211 47.4
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 3.8e-26 122.5 188 46.8
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 5.0e-26 122.1 209 43.5
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 1.5e-25 120.6 173 49.1
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 2.5e-25 119.8 193 46.1
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 3.2e-25 119.4 185 47.6
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 7.2e-25 118.2 177 49.2
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 9.4e-25 117.9 185 45.4
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 2.1e-24 116.7 178 48.9
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 2.1e-24 116.7 167 49.7
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 2.7e-24 116.3 188 42.6
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 6.1e-24 115.2 215 43.3
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.0e-23 114.4 168 49.4
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 1.8e-23 113.6 198 44.4
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 2.3e-23 113.2 194 46.4
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 3.0e-23 112.8 171 48.0
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 1.5e-22 110.5 175 45.1
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 7.5e-22 108.2 183 46.4
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 9.8e-22 107.8 190 45.3
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 9.8e-22 107.8 197 47.7
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 1.3e-21 107.5 196 44.4
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 1.7e-21 107.1 223 40.4
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 3.7e-21 105.9 192 43.2
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 4.8e-21 105.5 204 41.7
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 4.8e-21 105.5 204 41.7
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 8.3e-21 104.8 204 42.6
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 1.1e-20 104.4 196 42.3
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 1.4e-20 104.0 203 43.3
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 1.8e-20 103.6 190 44.2
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 1.8e-20 103.6 204 42.6
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 2.4e-20 103.2 149 49.0
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 2.4e-20 103.2 194 43.3
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 7.0e-20 101.7 185 44.3
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 2.0e-19 100.1 190 43.7
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 2.0e-19 100.1 190 43.7
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 5.9e-19 98.6 190 42.6
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 1.0e-18 97.8 197 46.7
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.3e-18 97.4 211 38.9
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 1.7e-18 97.1 180 44.4
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 8.6e-18 94.7 197 40.6
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 8.6e-18 94.7 200 43.0
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 1.5e-17 94.0 201 42.3
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 1.9e-17 93.6 197 38.6
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 7.2e-17 91.7 113 54.0
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 2.1e-16 90.1 189 41.3
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 3.6e-16 89.4 187 38.5
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 3.6e-16 89.4 197 38.1
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 8.0e-16 88.2 187 41.2
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 8.0e-16 88.2 164 45.1
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 1.0e-15 87.8 202 41.6
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 3.4e-14 82.8 186 39.8
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 3.4e-14 82.8 177 40.7
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 4.4e-14 82.4 133 49.6
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.3e-13 80.9 99 51.5
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 4.9e-13 79.0 189 39.2
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 4.9e-13 79.0 193 34.7
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 1.8e-12 77.0 135 43.7
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 5.4e-12 75.5 178 39.9
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 7.0e-12 75.1 53 67.9
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 3.5e-11 72.8 175 40.6
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 5.9e-11 72.0 191 35.1
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 6.6e-10 68.6 245 31.0
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 1.2e-08 64.3 187 34.2
MELO3C032917.2 Cucumis melo HOM05D004361 ORTHO05D004706 2.1e-08 63.5 170 38.2
Lj2E274T2 Lonicera japonica HOM05D004361 ORTHO05D004706 4.7e-08 62.4 108 44.4
TPR.G22022 Trifolium pratense HOM05D004361 ORTHO05D004706 8.0e-08 61.6 111 44.1
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 2.3e-07 60.1 204 33.3
Gohir.A12G262800 Gossypium hirsutum HOM05D002183 ORTHO05D002169 5.2e-07 58.9 54 57.4
Lsat_1_v5_gn_1_123061 Lactuca sativa HOM05D004361 ORTHO05D004706 5.2e-07 58.9 53 60.4
TPR.G5514 Trifolium pratense HOM05D004361 ORTHO05D004706 8.9e-07 58.2 85 43.5
Gohir.A05G312801 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.2e-06 57.8 53 58.5


User provided reference genes

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