Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 2.4e-209 731.9 359 100.0
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 2.2e-186 655.6 361 91.4
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 2.2e-186 655.6 361 91.4
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 1.1e-158 563.5 339 80.8
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 3.1e-156 555.4 357 77.3
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 3.6e-144 515.4 365 73.2
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 3.0e-143 512.3 365 72.6
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 3.9e-143 511.9 359 73.0
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 5.1e-143 511.5 375 71.7
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 5.1e-143 511.5 356 75.0
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 8.8e-143 510.8 356 74.7
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 5.7e-142 508.1 359 73.8
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 9.7e-142 507.3 363 71.9
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 2.2e-141 506.1 362 71.0
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 2.8e-141 505.8 308 78.2
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 3.7e-141 505.4 364 72.5
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 4.8e-141 505.0 339 74.3
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 6.3e-141 504.6 365 71.0
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 5.3e-140 501.5 366 69.7
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 2.6e-139 499.2 362 72.7
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 1.0e-138 497.3 365 70.1
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 1.7e-138 496.5 347 72.9
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 1.7e-138 496.5 330 75.2
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 2.9e-138 495.7 356 71.6
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 2.9e-138 495.7 355 72.1
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 5.0e-138 495.0 364 70.1
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 5.0e-138 495.0 363 72.2
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 1.1e-137 493.8 329 75.1
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 1.4e-137 493.4 346 73.1
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 3.2e-137 492.3 356 73.6
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 3.2e-137 492.3 363 71.3
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 4.2e-137 491.9 319 76.5
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 9.4e-137 490.7 350 72.3
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 2.7e-136 489.2 328 74.4
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 6.1e-136 488.0 361 69.8
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 1.8e-135 486.5 313 76.4
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 3.9e-135 485.3 310 78.4
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 5.1e-135 485.0 304 77.6
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 5.1e-135 485.0 361 69.5
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 8.8e-135 484.2 364 70.6
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 1.5e-134 483.4 359 70.5
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 9.7e-134 480.7 335 71.0
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 1.7e-133 479.9 364 68.4
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 2.2e-133 479.6 367 68.7
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 2.8e-133 479.2 313 75.4
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 3.7e-133 478.8 360 69.4
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 8.2e-133 477.6 327 71.9
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 1.8e-132 476.5 368 67.9
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 2.4e-132 476.1 366 66.9
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 2.4e-132 476.1 322 74.2
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 9.1e-132 474.2 366 68.6
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 2.0e-131 473.0 334 71.3
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 2.6e-131 472.6 321 73.8
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 3.5e-131 472.2 343 71.7
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 3.5e-131 472.2 308 75.3
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 4.5e-131 471.9 350 68.6
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 1.0e-130 470.7 348 70.4
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 1.3e-130 470.3 359 67.1
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 1.7e-130 469.9 315 74.3
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 2.9e-130 469.2 348 70.7
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 3.8e-130 468.8 355 69.3
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 5.0e-130 468.4 307 76.2
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 8.5e-130 467.6 324 72.8
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 8.5e-130 467.6 307 76.2
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 2.5e-129 466.1 318 72.6
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 4.2e-129 465.3 321 73.2
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 4.2e-129 465.3 356 68.5
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 4.2e-129 465.3 351 68.4
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 7.2e-129 464.5 332 72.9
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 7.2e-129 464.5 315 74.0
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 7.2e-129 464.5 304 73.4
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 1.6e-128 463.4 345 70.4
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 2.1e-128 463.0 348 68.7
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 6.1e-128 461.5 309 73.8
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 1.0e-127 460.7 336 72.6
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 1.0e-127 460.7 355 67.9
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 1.4e-127 460.3 313 72.8
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 2.3e-127 459.5 309 73.5
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 5.2e-127 458.4 308 73.1
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 5.2e-127 458.4 322 71.1
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 3.3e-126 455.7 370 65.9
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 1.3e-125 453.8 331 68.9
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 6.3e-125 451.4 345 68.4
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 1.1e-124 450.7 303 73.6
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 2.4e-124 449.5 333 68.8
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 3.1e-124 449.1 360 65.8
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 1.2e-123 447.2 283 77.4
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 1.3e-122 443.7 300 73.3
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 5.0e-122 441.8 300 73.0
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 7.2e-121 438.0 392 61.0
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 1.6e-120 436.8 226 90.3
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 1.4e-116 423.7 306 71.9
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 2.4e-116 422.9 346 65.0
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 2.4e-116 422.9 303 69.3
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 7.0e-116 421.4 367 60.8
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 7.7e-115 417.9 327 66.4
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 2.2e-114 416.4 359 61.8
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 8.0e-112 407.9 362 61.0
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 6.3e-109 398.3 262 70.6
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 1.4e-108 397.1 365 59.5
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 5.5e-105 385.2 304 64.8
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 1.6e-104 383.6 257 73.9
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 1.4e-103 380.6 258 69.4
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 5.2e-103 378.6 288 71.9
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 1.5e-102 377.1 297 64.0
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 2.2e-101 373.2 251 70.1
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 4.7e-96 355.5 282 63.8
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 8.9e-95 351.3 228 71.5
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 1.3e-93 347.4 319 61.8
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 9.5e-89 331.3 243 68.7
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 1.6e-88 330.5 357 54.6
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 2.7e-83 313.2 296 55.1
Hma1.2p1_2753F.1_g327930 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 1.4e-76 290.8 277 57.8
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 1.2e-70 271.2 290 49.7
HPP92_004745 Vanilla planifolia HOM05D005176 ORTHO05D006482 3.4e-70 269.6 189 71.4
Dinv13952 Davidia involucrata HOM05D005176 ORTHO05D006482 2.9e-69 266.5 237 65.8
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 2.7e-67 260.0 214 58.9
FAN21G2340 Fragaria x ananassa HOM05D005176 ORTHO05D006482 1.3e-66 257.7 243 62.6
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 4.6e-59 232.6 201 55.7
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 1.7e-58 230.7 205 53.7
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 1.5e-57 227.6 225 52.9
AagrBONN_evm.TU.Sc2ySwM_362.2521 Anthoceros agrestis HOM05D005176 ORTHO05D006482 2.1e-56 223.8 200 54.0
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 2.1e-56 223.8 190 56.8
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 8.1e-56 221.9 356 43.0
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 3.8e-53 213.0 195 54.9
GSVIVG01007272001 Vitis vinifera HOM05D005176 ORTHO05D006482 3.0e-50 203.4 293 46.8
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 8.7e-50 201.8 190 53.2
Duzib235G1273 Durio zibethinus HOM05D005176 ORTHO05D006482 2.0e-46 190.7 111 82.9
Hma1.2p1_0298F.1_g117340 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 1.3e-42 177.9 209 50.7
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 3.3e-41 173.3 109 70.6
PRCOL_00006497 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 1.4e-36 157.9 145 53.1
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 1.9e-36 157.5 102 73.5
QL03p008204 Quercus lobata HOM05D005176 ORTHO05D006482 7.1e-36 155.6 113 69.0
AagrBONN_evm.TU.Sc2ySwM_344.415 Anthoceros agrestis HOM05D005176 ORTHO05D006482 3.5e-35 153.3 161 52.2
SEGI_01990 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 3.8e-29 133.3 86 74.4
A03p53390 Brassica napus HOM05D005176 ORTHO05D006482 2.6e-22 110.5 115 51.3
Eucgr.E03965 Eucalyptus grandis HOM05D005176 ORTHO05D006482 8.8e-18 95.5 50 86.0
BraA03t14406Z Brassica rapa HOM05D005176 ORTHO05D006482 2.6e-17 94.0 101 51.5
arahy.Tifrunner.gnm1.ann1.E0HWS1 Arachis hypogaea HOM05D005176 ORTHO05D038931 4.8e-16 89.7 92 54.3
Os03g0847500 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D038931 6.3e-16 89.4 112 51.8
CBR_g12323 Chara braunii HOM05D005176 ORTHO05D006482 4.1e-15 86.7 65 60.0
Lj3g0010948 Lotus japonicus HOM05D005176 ORTHO05D006482 5.0e-13 79.7 37 91.9
CBR_g12320 Chara braunii HOM05D000019 ORTHO05D009492 1.0e-10 72.0 81 46.9
Prupe.1G061900 Prunus persica HOM05D001659 ORTHO05D001659 3.3e-09 67.0 191 26.2
Nn3g19263 Nelumbo nucifera HOM05D001659 ORTHO05D001659 5.7e-09 66.2 206 25.7
BolC7t45661H Brassica oleracea HOM05D005176 ORTHO05D006482 7.4e-09 65.9 71 53.5
PGSC0003DMG400018484 Solanum tuberosum HOM05D001659 ORTHO05D001659 1.8e-07 61.2 191 25.1
Solyc08g005550.4 Solanum lycopersicum HOM05D001659 ORTHO05D001659 4.1e-07 60.1 183 27.9
Sopen08g001570 Solanum pennellii HOM05D001659 ORTHO05D001659 7.0e-07 59.3 180 25.0
THA.LOC104814432 Tarenaya hassleriana HOM05D001659 ORTHO05D001659 2.0e-06 57.8 191 25.1
PRCOL_00006496 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 7.7e-06 55.8 53 54.7


User provided reference genes

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