Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 5.3e-153 544.7 350 100.0
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 1.2e-131 473.8 357 85.2
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 5.7e-131 471.5 357 84.9
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 1.4e-124 450.3 357 82.4
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 6.8e-124 448.0 355 87.9
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 6.4e-122 441.4 355 87.0
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.4e-92 344.0 363 71.3
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 1.3e-77 294.3 347 62.5
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.6e-77 293.9 346 61.6
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.7e-72 276.6 316 73.7
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 6.2e-69 265.4 350 60.9
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 6.2e-69 265.4 364 64.3
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 1.4e-68 264.2 398 61.8
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 2.4e-68 263.5 358 60.3
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 3.8e-66 256.1 318 58.5
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 1.1e-65 254.6 341 60.1
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.4e-65 254.2 343 61.5
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 3.2e-65 253.1 352 50.9
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 7.1e-65 251.9 339 58.1
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.3e-63 246.9 341 56.3
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 3.9e-63 246.1 351 55.3
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 7.4e-62 241.9 364 51.1
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 9.7e-62 241.5 338 58.9
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.3e-61 241.1 356 52.0
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 4.8e-61 239.2 375 57.6
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 1.1e-60 238.0 351 58.4
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 1.1e-60 238.0 345 61.7
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 5.3e-60 235.7 321 61.1
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 1.5e-59 234.2 325 61.5
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 3.4e-59 233.0 356 55.3
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 3.4e-59 233.0 341 60.4
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 5.9e-59 232.3 356 55.3
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.3e-58 231.1 373 52.8
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 2.2e-58 230.3 353 56.1
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 2.2e-58 230.3 338 59.2
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.9e-58 229.9 351 53.8
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 3.8e-58 229.6 332 63.3
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 5.0e-58 229.2 366 48.6
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 8.5e-58 228.4 358 52.0
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 1.1e-57 228.0 356 56.7
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 1.1e-57 228.0 356 56.7
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 1.1e-57 228.0 356 56.7
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 1.1e-57 228.0 332 52.1
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 1.1e-57 228.0 339 51.6
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 1.4e-57 227.6 352 52.8
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 2.5e-57 226.9 356 52.2
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 5.5e-57 225.7 354 52.5
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 9.4e-57 224.9 355 49.9
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 4.6e-56 222.6 363 59.8
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 6.1e-56 222.2 353 53.5
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 7.9e-56 221.9 323 58.2
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 1.0e-55 221.5 356 53.1
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 1.8e-55 220.7 320 55.6
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 2.3e-55 220.3 353 49.6
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.3e-55 220.3 381 51.4
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 5.1e-55 219.2 366 50.0
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 6.7e-55 218.8 370 50.5
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 6.7e-55 218.8 342 48.8
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 8.8e-55 218.4 338 60.1
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 1.1e-54 218.0 361 52.9
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 1.1e-54 218.0 374 49.2
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 2.0e-54 217.2 338 58.9
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 2.5e-54 216.9 369 50.9
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 4.3e-54 216.1 355 52.4
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 5.7e-54 215.7 355 56.1
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 1.3e-53 214.5 318 53.8
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 2.2e-53 213.8 321 55.8
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 3.7e-53 213.0 347 52.2
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 4.8e-53 212.6 340 58.2
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 6.3e-53 212.2 352 50.9
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.1e-52 211.5 371 51.8
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 3.1e-52 209.9 353 48.4
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 4.1e-52 209.5 332 46.1
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 5.3e-52 209.1 334 56.3
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 6.9e-52 208.8 344 51.5
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.2e-51 208.0 344 51.5
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 2.0e-51 207.2 345 49.3
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 5.9e-51 205.7 383 52.0
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 1.3e-50 204.5 380 46.6
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 3.8e-50 203.0 343 56.9
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 5.0e-50 202.6 363 43.8
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 5.0e-50 202.6 350 47.4
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 5.0e-50 202.6 374 47.3
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 6.5e-50 202.2 365 53.2
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 1.4e-49 201.1 334 50.3
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 2.5e-49 200.3 325 48.3
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 3.2e-49 199.9 342 46.8
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 4.2e-49 199.5 249 53.4
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 1.2e-48 198.0 353 47.0
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 1.0e-47 194.9 345 47.5
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 1.0e-47 194.9 347 47.8
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 8.8e-47 191.8 347 42.9
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 5.7e-46 189.1 332 51.8
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 9.7e-46 188.3 326 50.9
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.3e-45 188.0 366 54.4
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 2.8e-45 186.8 361 46.3
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.8e-45 186.8 342 43.6
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 8.2e-45 185.3 336 44.3
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.4e-44 184.5 342 53.5
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 2.4e-44 183.7 320 54.4
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.0e-43 180.6 320 54.1
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 3.8e-42 176.4 336 39.0
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 8.5e-42 175.3 306 51.3
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 8.5e-42 175.3 303 47.5
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 1.4e-41 174.5 355 49.0
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 2.5e-41 173.7 357 46.5
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 4.2e-41 172.9 238 60.5
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 4.2e-41 172.9 347 42.4
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 9.4e-41 171.8 281 49.8
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 2.1e-40 170.6 356 44.9
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 2.7e-40 170.2 327 51.1
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 1.0e-39 168.3 359 48.7
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 1.4e-39 167.9 330 57.3
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 2.3e-39 167.2 399 40.9
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 3.3e-38 163.3 342 45.3
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 2.2e-37 160.6 171 60.2
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 2.2e-37 160.6 298 46.6
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 1.1e-36 158.3 317 38.5
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 1.4e-36 157.9 309 42.7
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 2.0e-35 154.1 334 38.6
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 2.0e-35 154.1 418 39.5
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 7.7e-35 152.1 329 49.8
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 5.5e-33 146.0 340 41.2
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 9.4e-33 145.2 251 57.4
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 2.1e-32 144.1 352 45.7
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 2.1e-32 144.1 352 40.9
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 2.0e-30 137.5 312 43.9
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 3.4e-30 136.7 295 38.6
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 4.4e-30 136.3 157 54.8
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 2.8e-29 133.7 342 37.4
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 6.3e-29 132.5 357 35.6
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 1.1e-28 131.7 230 42.2
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 4.1e-28 129.8 378 41.8
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 2.9e-26 123.6 358 41.6
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 3.8e-26 123.2 335 38.2
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 5.0e-26 122.9 161 50.9
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 6.5e-26 122.5 180 47.8
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 1.2e-24 118.2 334 38.3
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.2e-24 118.2 158 50.0
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 2.7e-24 117.1 333 41.7
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.7e-24 117.1 305 41.6
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 5.2e-23 112.8 245 40.4
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 5.2e-23 112.8 167 47.9
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 2.2e-21 107.5 216 46.8
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.8e-20 104.4 118 55.1
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.1e-17 95.1 307 43.3
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 3.3e-17 93.6 218 36.7
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 2.1e-16 90.9 273 35.5
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 1.5e-14 84.7 352 37.2
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 9.8e-14 82.0 349 39.0
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 2.8e-13 80.5 324 30.2
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 2.4e-12 77.4 170 40.0
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 1.5e-09 68.2 335 31.9
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.4e-06 57.0 96 49.0
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 4.4e-06 56.6 179 33.0


User provided reference genes

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