Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G011650 Populus trichocarpa HOM05D003579 ORTHO05D004266 1.9e-22 108.2 51 100.0
arahy.Tifrunner.gnm1.ann1.7TIF1A Arachis hypogaea HOM05D003579 ORTHO05D004266 1.3e-20 102.1 50 94.0
arahy.Tifrunner.gnm1.ann1.N38075 Arachis hypogaea HOM05D003579 ORTHO05D004266 1.3e-20 102.1 50 94.0
CiPaw.15G149000 Carya illinoinensis HOM05D003579 ORTHO05D004266 1.7e-20 101.7 50 94.0
Haze_18948 Corylus avellana HOM05D003579 ORTHO05D004266 1.7e-20 101.7 50 94.0
Lalb_Chr24g0398301 Lupinus albus HOM05D003579 ORTHO05D004266 1.7e-20 101.7 50 94.0
Potri.012G041100 Populus trichocarpa HOM05D003579 ORTHO05D004266 1.7e-20 101.7 50 94.0
QL10p038058 Quercus lobata HOM05D003579 ORTHO05D004266 1.7e-20 101.7 50 94.0
RcHm_v2.0_Chr7g0177761 Rosa chinensis HOM05D003579 ORTHO05D004266 1.7e-20 101.7 50 94.0
Sabra12G0028200 Salix brachista HOM05D003579 ORTHO05D004266 1.7e-20 101.7 50 94.0
MBI13_g21695_MAGBIO Magnolia biondii HOM05D003579 ORTHO05D004266 3.9e-20 100.5 50 88.0
ClCG04G012780 Citrullus lanatus HOM05D003579 ORTHO05D004266 5.1e-20 100.1 50 92.0
MELO3C001926.2 Cucumis melo HOM05D003579 ORTHO05D004266 5.1e-20 100.1 50 92.0
CsaV3_1G004890 Cucumis sativus L. HOM05D003579 ORTHO05D004266 5.1e-20 100.1 50 92.0
FvH4_5g17820 Fragaria vesca HOM05D003579 ORTHO05D004266 6.6e-20 99.8 50 92.0
FAN18G3127 Fragaria x ananassa HOM05D003579 ORTHO05D004266 6.6e-20 99.8 50 92.0
Atru.chr9.1578_Atru.chr9.1579 Acer truncatum HOM05D003579 ORTHO05D004266 8.6e-20 99.4 50 92.0
ATR0598G272 Amborella trichopoda HOM05D003579 ORTHO05D004266 8.6e-20 99.4 49 91.8
Cc04_g09210 Coffea canephora HOM05D003579 ORTHO05D004266 8.6e-20 99.4 50 92.0
Nitab4.5_0003127g0010 Nicotiana tabacum HOM05D003579 ORTHO05D004266 8.6e-20 99.4 50 92.0
Oeu023523.1 Olea europaea HOM05D003579 ORTHO05D004266 8.6e-20 99.4 50 92.0
Peaxi162Scf00643g00664 Petunia axillaris HOM05D003579 ORTHO05D004266 8.6e-20 99.4 50 92.0
PGR044G2375 Punica granatum HOM05D003579 ORTHO05D004266 8.6e-20 99.4 50 92.0
Rhsim08G0128400 Rhododendron simsii HOM05D003579 ORTHO05D004266 8.6e-20 99.4 50 92.0
Sed0003427 Sechium edule HOM05D003579 ORTHO05D004266 8.6e-20 99.4 50 90.0
Solyc06g072380.3 Solanum lycopersicum HOM05D003579 ORTHO05D004266 8.6e-20 99.4 50 92.0
Sopen06g028750 Solanum pennellii HOM05D003579 ORTHO05D004266 8.6e-20 99.4 50 92.0
PGSC0003DMG400026957 Solanum tuberosum HOM05D003579 ORTHO05D004266 8.6e-20 99.4 50 92.0
TWI60G0145 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 8.6e-20 99.4 49 91.8
vmacro17765 Vaccinium macrocarpon HOM05D003579 ORTHO05D004266 8.6e-20 99.4 50 92.0
Actinidia34663 Actinidia chinensis HOM05D003579 ORTHO05D004266 1.1e-19 99.0 50 90.0
C05p44830 Brassica napus HOM05D003579 ORTHO05D004266 1.1e-19 99.0 49 89.8
BolC5t33210H Brassica oleracea HOM05D003579 ORTHO05D004266 1.1e-19 99.0 49 89.8
Cpa.g.sc3.337 Carica papaya HOM05D003579 ORTHO05D004266 1.5e-19 98.6 50 88.0
MD06G1234200 Malus domestica HOM05D003579 ORTHO05D004266 1.5e-19 98.6 49 91.8
Prupe.5G238700 Prunus persica HOM05D003579 ORTHO05D004266 1.5e-19 98.6 50 92.0
Aa31LG8G4650 Aethionema arabicum HOM05D003579 ORTHO05D004266 1.9e-19 98.2 49 91.8
AL3G30930 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 1.9e-19 98.2 49 91.8
AT3G17770 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 1.9e-19 98.2 49 91.8
A05p32070 Brassica napus HOM05D003579 ORTHO05D004266 1.9e-19 98.2 49 91.8
C05p48570 Brassica napus HOM05D003579 ORTHO05D004266 1.9e-19 98.2 49 91.8
BolC5t33593H Brassica oleracea HOM05D003579 ORTHO05D004266 1.9e-19 98.2 49 91.8
BraA05t22036Z Brassica rapa HOM05D003579 ORTHO05D004266 1.9e-19 98.2 49 91.8
Carub.0003s1749 Capsella rubella HOM05D003579 ORTHO05D004266 1.9e-19 98.2 49 91.8
CARHR093110 Cardamine hirsuta HOM05D003579 ORTHO05D004266 1.9e-19 98.2 49 91.8
DCAR_011388 Daucus carota HOM05D003579 ORTHO05D004266 1.9e-19 98.2 50 90.0
Lsat_1_v5_gn_8_1741 Lactuca sativa HOM05D003579 ORTHO05D004266 1.9e-19 98.2 50 90.0
Os03g0719300 Oryza sativa ssp. japonica HOM05D003579 ORTHO05D004266 1.9e-19 98.2 50 90.0
Sp3g15890 Schrenkiella parvula HOM05D003579 ORTHO05D004266 1.9e-19 98.2 49 91.8
BraA05t21814Z Brassica rapa HOM05D003579 ORTHO05D004266 2.5e-19 97.8 49 87.8
BraA05t21824Z Brassica rapa HOM05D003579 ORTHO05D004266 2.5e-19 97.8 49 87.8
CiPaw.16G098300 Carya illinoinensis HOM05D003579 ORTHO05D004266 2.5e-19 97.8 50 90.0
Dinv07799 Davidia involucrata HOM05D003579 ORTHO05D004266 2.5e-19 97.8 50 90.0
Duzib205G0446 Durio zibethinus HOM05D003579 ORTHO05D004266 2.5e-19 97.8 50 88.0
FAN08G1300 Fragaria x ananassa HOM05D003579 ORTHO05D004266 2.5e-19 97.8 49 91.8
FAN13G2047 Fragaria x ananassa HOM05D003579 ORTHO05D004266 2.5e-19 97.8 49 91.8
Thecc.03G066100 Theobroma cacao HOM05D003579 ORTHO05D004266 2.5e-19 97.8 50 88.0
Aqoxy3G00001 Aquilegia oxysepala HOM05D003579 ORTHO05D004266 3.3e-19 97.4 49 91.8
CDE06G0014 Ceratophyllum demersum HOM05D003579 ORTHO05D004266 3.3e-19 97.4 50 90.0
Thhalv10011337m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 3.3e-19 97.4 50 88.0
FAN04G1919 Fragaria x ananassa HOM05D003579 ORTHO05D004266 3.3e-19 97.4 49 91.8
Lj5A164G66 Lonicera japonica HOM05D003579 ORTHO05D004266 3.3e-19 97.4 50 90.0
PSO478G0806 Papaver somniferum HOM05D003579 ORTHO05D004266 3.3e-19 97.4 49 91.8
SalBow1G2020 Salvia bowleyana HOM05D003579 ORTHO05D004266 3.3e-19 97.4 49 91.8
CANSAT56G2203 Cannabis sativa HOM05D003579 ORTHO05D004266 4.3e-19 97.1 50 88.0
CANSAT56G3429 Cannabis sativa HOM05D003579 ORTHO05D004266 4.3e-19 97.1 50 88.0
Ciclev10019405m.g Citrus clementina HOM05D003579 ORTHO05D004266 4.3e-19 97.1 50 90.0
Cc04_g09220 Coffea canephora HOM05D003579 ORTHO05D004266 4.3e-19 97.1 50 90.0
ECA233G2231 Erigeron canadensis HOM05D003579 ORTHO05D004266 4.3e-19 97.1 50 88.0
Hma1.2p1_0471F.1_g159320 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 4.3e-19 97.1 50 90.0
Phvul.004G146300 Phaseolus vulgaris HOM05D003579 ORTHO05D004266 4.3e-19 97.1 49 91.8
VMungo0464G0093 Vigna mungo HOM05D003579 ORTHO05D004266 4.3e-19 97.1 49 91.8
Duzib084G0133 Durio zibethinus HOM05D003579 ORTHO05D004266 5.6e-19 96.7 50 86.0
Thhalv10020350m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 5.6e-19 96.7 49 89.8
Glyma.07G107100 Glycine max HOM05D003579 ORTHO05D004266 5.6e-19 96.7 49 91.8
Sc10g0008960 Simmondsia chinensis HOM05D003579 ORTHO05D004266 5.6e-19 96.7 50 88.0
Glyma.09G170600 Glycine max HOM05D003579 ORTHO05D004266 7.3e-19 96.3 49 89.8
Lalb_Chr14g0370501 Lupinus albus HOM05D003579 ORTHO05D004266 7.3e-19 96.3 50 90.0
Mapoly0125s0006 Marchantia polymorpha HOM05D003579 ORTHO05D004266 7.3e-19 96.3 49 85.7
MSTRG.9359 Avicennia marina HOM05D003579 ORTHO05D004266 9.5e-19 95.9 49 89.8
Migut.D01207 Erythranthe guttata HOM05D003579 ORTHO05D004266 9.5e-19 95.9 49 89.8
CSS0000253 Camellia sinensis var. sinensis HOM05D003579 ORTHO05D004266 1.2e-18 95.5 50 88.0
CAN.G65.87 Capsicum annuum HOM05D003579 ORTHO05D004266 1.2e-18 95.5 50 88.0
HanXRQChr03g0087091 Helianthus annuus HOM05D003579 ORTHO05D004266 1.2e-18 95.5 50 88.0
BcaC07g37135 Brassica carinata HOM05D003579 ORTHO05D004266 2.1e-18 94.7 50 86.0
C08p05080 Brassica napus HOM05D003579 ORTHO05D004266 2.1e-18 94.7 50 86.0
BolC8t47313H Brassica oleracea HOM05D003579 ORTHO05D004266 2.1e-18 94.7 50 86.0
SGA_v2.0_scaffold74G24677 Striga asiatica HOM05D003579 ORTHO05D004266 2.1e-18 94.7 49 89.8
GSVIVG01012941001 Vitis vinifera HOM05D003579 ORTHO05D004266 2.1e-18 94.7 50 88.0
AagrBONN_evm.TU.Sc2ySwM_228.5556 Anthoceros agrestis HOM05D003579 ORTHO05D004266 2.8e-18 94.4 49 85.7
Nn3g19567 Nelumbo nucifera HOM05D003579 ORTHO05D004266 2.8e-18 94.4 50 86.0
Hund22318 Selenicereus undatus HOM05D003579 ORTHO05D004266 2.8e-18 94.4 50 86.0
COL.COLO4_24456 Corchorus olitorius HOM05D003579 ORTHO05D004266 3.6e-18 94.0 50 86.0
Eucgr.H00571 Eucalyptus grandis HOM05D003579 ORTHO05D004266 3.6e-18 94.0 50 88.0
PSO017G1464 Papaver somniferum HOM05D003579 ORTHO05D004266 3.6e-18 94.0 49 89.8
Potri.015G032500 Populus trichocarpa HOM05D003579 ORTHO05D004266 3.6e-18 94.0 50 88.0
SGA_v2.0_scaffold40G15653 Striga asiatica HOM05D003579 ORTHO05D004266 3.6e-18 94.0 50 86.0
A08p04710 Brassica napus HOM05D003579 ORTHO05D004266 4.7e-18 93.6 50 84.0
BraA08t32501Z Brassica rapa HOM05D003579 ORTHO05D004266 4.7e-18 93.6 50 84.0
Carub.0001s3756 Capsella rubella HOM05D003579 ORTHO05D004266 4.7e-18 93.6 49 83.7
SEGI_25290 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 6.2e-18 93.2 49 85.7
HPP92_013151 Vanilla planifolia HOM05D003579 ORTHO05D004266 6.2e-18 93.2 49 83.7
Eucgr.K02291 Eucalyptus grandis HOM05D003579 ORTHO05D004266 8.1e-18 92.8 50 86.0
MD14G1240900 Malus domestica HOM05D003579 ORTHO05D004266 8.1e-18 92.8 49 87.8
Manes.06G001700 Manihot esculenta HOM05D003579 ORTHO05D004266 8.1e-18 92.8 49 87.8
Sp1g35380 Schrenkiella parvula HOM05D003579 ORTHO05D004266 8.1e-18 92.8 50 84.0
HPP92_013127 Vanilla planifolia HOM05D003579 ORTHO05D004266 8.1e-18 92.8 49 83.7
AT1G48430 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 1.1e-17 92.4 49 81.6
Hma1.2p1_0385F.1_g141530 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 1.4e-17 92.0 50 84.0
Hma1.2p1_0385F.1_g141540 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 1.4e-17 92.0 50 84.0
Hma1.2p1_1785F.1_g302226 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 1.4e-17 92.0 50 84.0
Sabra15G0026700 Salix brachista HOM05D003579 ORTHO05D004266 1.4e-17 92.0 50 84.0
SabraUnG0005900 Salix brachista HOM05D003579 ORTHO05D004266 1.4e-17 92.0 50 84.0
CARHR038050 Cardamine hirsuta HOM05D003579 ORTHO05D004266 2.4e-17 91.3 49 83.7
Gohir.A03G091600 Gossypium hirsutum HOM05D003579 ORTHO05D004266 2.4e-17 91.3 50 84.0
Gohir.D02G120000 Gossypium hirsutum HOM05D003579 ORTHO05D004266 2.4e-17 91.3 50 84.0
PGR083G0897 Punica granatum HOM05D003579 ORTHO05D004266 2.4e-17 91.3 50 86.0
EL10Ac8g19495 Beta vulgaris HOM05D003579 ORTHO05D004266 4.0e-17 90.5 50 88.0
AL1G55060 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 5.2e-17 90.1 49 81.6
AUR62034013 Chenopodium quinoa HOM05D003579 ORTHO05D004266 5.2e-17 90.1 49 89.8
Nn4g24545 Nelumbo nucifera HOM05D003579 ORTHO05D004266 5.2e-17 90.1 50 82.0
TWI15G0294 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 5.2e-17 90.1 50 86.0
Gohir.A07G060800 Gossypium hirsutum HOM05D003579 ORTHO05D004266 6.8e-17 89.7 50 80.0
Gorai.001G069000 Gossypium raimondii HOM05D003579 ORTHO05D004266 6.8e-17 89.7 50 80.0
Lj2g0001753 Lotus japonicus HOM05D003579 ORTHO05D004266 6.8e-17 89.7 49 81.6
Gorai.005G134000 Gossypium raimondii HOM05D003579 ORTHO05D004266 1.2e-16 89.0 50 82.0
TPR.G31707 Trifolium pratense HOM05D003579 ORTHO05D004266 1.2e-16 89.0 50 80.0
SMO230G0064 Selaginella moellendorffii HOM05D003579 ORTHO05D004266 1.5e-16 88.6 49 81.6
Psat1g124800 Pisum sativum HOM05D003579 ORTHO05D004266 2.6e-16 87.8 50 78.0
Medtr6g073003 Medicago truncatula HOM05D003579 ORTHO05D004266 3.4e-16 87.4 56 75.0
CBR_g4012 Chara braunii HOM05D003579 ORTHO05D004266 4.4e-16 87.0 49 81.6
Lj2g0026679 Lotus japonicus HOM05D003579 ORTHO05D004266 4.4e-16 87.0 49 79.6
Ah.14g085880 Amaranthus hybridus HOM05D003579 ORTHO05D004266 5.8e-16 86.7 49 85.7
MCO02G001 Micromonas commoda HOM05D003579 ORTHO05D004266 9.9e-16 85.9 49 77.6
Pp3c10_19150 Physcomitrium patens HOM05D003579 ORTHO05D004266 9.9e-16 85.9 56 75.0
Pp3c3_29160 Physcomitrium patens HOM05D003579 ORTHO05D004266 3.8e-15 84.0 56 73.2
Pp3c4_4070 Physcomitrium patens HOM05D003579 ORTHO05D004266 4.9e-15 83.6 56 73.2
Ca_20292_v3 Cicer arietinum L. HOM05D003579 ORTHO05D004266 6.4e-15 83.2 50 76.0
Lj5g0002346 Lotus japonicus HOM05D003579 ORTHO05D004266 2.1e-13 78.2 48 77.1
AUR62038599 Chenopodium quinoa HOM05D003579 ORTHO05D004266 7.8e-13 76.3 42 88.1
VMungo1383G3479 Vigna mungo HOM05D003579 ORTHO05D004266 7.8e-13 76.3 49 75.5
Cre13.g607450 Chlamydomonas reinhardtii HOM05D003579 ORTHO05D004266 6.6e-12 73.2 55 65.5
BcaNung05880 Brassica carinata HOM05D003579 ORTHO05D004266 7.3e-11 69.7 61 63.9
Nitab4.5_0000033g0340 Nicotiana tabacum HOM05D003579 ORTHO05D004266 2.1e-10 68.2 43 74.4
PRCOL_00004885 Prasinoderma coloniale HOM05D003579 ORTHO05D004266 7.6e-08 59.7 50 52.0
Lsat_1_v5_gn_1_111321 Lactuca sativa HOM05D003579 ORTHO05D004266 4.9e-07 57.0 32 78.1


User provided reference genes

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