Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G008676 Populus trichocarpa HOM05D000005 ORTHO05D012114 3.3e-221 771.5 428 100.0
Potri.011G008420 Populus trichocarpa HOM05D000005 ORTHO05D012114 1.8e-179 632.9 377 96.6
Sabra11G0007000 Salix brachista HOM05D000005 ORTHO05D012114 1.1e-163 580.5 401 80.3
Sabra11G0008800 Salix brachista HOM05D002014 ORTHO05D012114 7.2e-160 567.8 393 82.4
Sabra11G0009000 Salix brachista HOM05D002014 ORTHO05D012114 4.7e-159 565.1 381 85.8
Sabra11G0009100 Salix brachista HOM05D000004 ORTHO05D012114 1.8e-158 563.1 393 74.0
Sabra11G0007300 Salix brachista HOM05D000005 ORTHO05D012114 5.5e-152 541.6 311 87.1
Sabra11G0008900 Salix brachista HOM05D000005 ORTHO05D012114 4.7e-143 511.9 317 82.0
Potri.011G077260 Populus trichocarpa HOM05D000005 ORTHO05D012114 2.3e-105 386.7 397 59.7
Potri.011G008612 Populus trichocarpa HOM05D000005 ORTHO05D000012 8.9e-102 374.8 398 56.0
Potri.011G008164 Populus trichocarpa HOM05D000005 ORTHO05D000012 3.4e-101 372.9 395 55.7
Potri.011G012475 Populus trichocarpa HOM05D000005 ORTHO05D000012 7.6e-101 371.7 390 55.9
Potri.011G012750 Populus trichocarpa HOM05D000005 ORTHO05D012114 7.6e-101 371.7 396 58.6
Potri.006G269900 Populus trichocarpa HOM05D000005 ORTHO05D012114 2.9e-100 369.8 395 54.7
Potri.011G013900 Populus trichocarpa HOM05D000005 ORTHO05D000012 4.9e-100 369.0 404 54.7
Potri.006G283700 Populus trichocarpa HOM05D000005 ORTHO05D012114 4.6e-98 362.5 399 54.1
Potri.011G012000 Populus trichocarpa HOM05D000005 ORTHO05D000012 3.9e-97 359.4 398 56.0
Potri.011G013450 Populus trichocarpa HOM05D000005 ORTHO05D000012 8.7e-97 358.2 388 55.7
Potri.006G282800 Populus trichocarpa HOM05D000005 ORTHO05D012114 1.1e-96 357.8 399 53.4
Potri.006G283100 Populus trichocarpa HOM05D000005 ORTHO05D012114 4.3e-96 355.9 422 52.4
Potri.011G009251 Populus trichocarpa HOM05D000005 ORTHO05D000012 1.3e-95 354.4 394 59.4
Potri.011G008292 Populus trichocarpa HOM05D000005 ORTHO05D000012 4.8e-95 352.4 397 53.9
Potri.011G008868 Populus trichocarpa HOM05D000005 ORTHO05D000012 1.8e-94 350.5 397 54.7
Potri.006G282200 Populus trichocarpa HOM05D000005 ORTHO05D000012 4.0e-94 349.4 403 54.1
Potri.006G282300 Populus trichocarpa HOM05D000005 ORTHO05D000012 4.0e-94 349.4 422 51.9
Potri.006G283000 Populus trichocarpa HOM05D000005 ORTHO05D000012 2.2e-92 343.6 400 52.8
Potri.006G284000 Populus trichocarpa HOM05D000005 ORTHO05D012114 3.8e-92 342.8 400 53.2
Potri.011G015400 Populus trichocarpa HOM05D000005 ORTHO05D000012 8.4e-92 341.7 380 56.3
Potri.006G282600 Populus trichocarpa HOM05D000005 ORTHO05D000012 1.1e-91 341.3 384 55.5
Sabra16G0035600 Salix brachista HOM05D000005 ORTHO05D012114 9.3e-75 285.0 439 42.6
Potri.006G282700 Populus trichocarpa HOM05D000005 ORTHO05D012114 1.9e-59 234.2 201 66.7
Potri.006G283600 Populus trichocarpa HOM05D000005 ORTHO05D012114 1.9e-59 234.2 201 66.7
Potri.006G283400 Populus trichocarpa HOM05D000005 ORTHO05D012114 2.5e-59 233.8 211 63.5
Potri.011G012851 Populus trichocarpa HOM05D000005 ORTHO05D012114 6.7e-49 199.1 164 66.5
Potri.011G011600 Populus trichocarpa HOM05D000005 ORTHO05D000012 4.8e-47 193.0 165 67.9
Potri.011G012201 Populus trichocarpa HOM05D000005 ORTHO05D012114 1.9e-43 181.0 309 43.7
Sabra11G0001600 Salix brachista HOM05D000005 ORTHO05D012114 2.7e-42 177.2 270 45.9
Potri.011G014701 Populus trichocarpa HOM05D000005 ORTHO05D012114 4.7e-42 176.4 167 54.5
Potri.011G008228 Populus trichocarpa HOM05D000005 ORTHO05D000012 1.8e-38 164.5 132 69.7
Potri.011G014501 Populus trichocarpa HOM05D000005 ORTHO05D012114 1.5e-32 144.8 119 68.1
Potri.011G009400 Populus trichocarpa HOM05D000005 ORTHO05D000012 8.3e-31 139.0 107 73.8
Cpa.g.sc4.91 Carica papaya HOM05D000005 ORTHO05D000012 6.8e-17 92.8 309 28.8
ECA248G0885 Erigeron canadensis HOM05D000005 ORTHO05D000012 2.2e-15 87.8 261 29.5
Potri.007G099700 Populus trichocarpa HOM05D000005 ORTHO05D000012 1.2e-13 82.0 278 25.9
RcHm_v2.0_Chr1g0348431 Rosa chinensis HOM05D000005 ORTHO05D000012 2.0e-13 81.3 280 28.2
RcHm_v2.0_Chr4g0405381 Rosa chinensis HOM05D000005 ORTHO05D000012 2.7e-13 80.9 283 28.3
CSS0014612 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 2.3e-12 77.8 267 28.1
CSS0032356 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 2.3e-12 77.8 266 26.7
PGSC0003DMG401020721 Solanum tuberosum HOM05D000005 ORTHO05D000012 2.3e-12 77.8 281 29.2
PGSC0003DMG402020721 Solanum tuberosum HOM05D000005 ORTHO05D000012 2.3e-12 77.8 281 29.2
RcHm_v2.0_Chr1g0348421 Rosa chinensis HOM05D000005 ORTHO05D000012 2.9e-12 77.4 280 28.6
PGSC0003DMG400013094 Solanum tuberosum HOM05D000005 ORTHO05D000012 8.6e-12 75.9 256 29.7
Manes.09G158500 Manihot esculenta HOM05D000005 ORTHO05D000012 2.5e-11 74.3 284 27.1
Nitab4.5_0003247g0040 Nicotiana tabacum HOM05D000005 ORTHO05D000012 2.5e-11 74.3 295 28.1
Potri.001G028750 Populus trichocarpa HOM05D000005 ORTHO05D000012 3.3e-11 73.9 273 28.2
Cpa.g.sc4.82 Carica papaya HOM05D000005 ORTHO05D000012 4.3e-11 73.6 292 27.4
Cpa.g.sc4.86 Carica papaya HOM05D000005 ORTHO05D000012 4.3e-11 73.6 321 27.7
CSS0009639 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 1.2e-10 72.0 269 28.3
FAN24G1899 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.8e-10 70.9 268 27.2
Prupe.2G101900 Prunus persica HOM05D000005 ORTHO05D000012 2.8e-10 70.9 279 24.7
Dinv38450 Davidia involucrata HOM05D000005 ORTHO05D000012 3.6e-10 70.5 100 47.0
ECA248G0631 Erigeron canadensis HOM05D000005 ORTHO05D000012 3.6e-10 70.5 250 28.4
FvH4_2g20310 Fragaria vesca HOM05D000005 ORTHO05D000012 3.6e-10 70.5 259 24.7
Hma1.2p1_0188F.1_g082485 Hydrangea macrophylla HOM05D000005 ORTHO05D000012 3.6e-10 70.5 257 26.5
FAN24G1486 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.7e-10 70.1 259 24.7
RcHm_v2.0_Chr1g0348311 Rosa chinensis HOM05D000005 ORTHO05D000012 4.7e-10 70.1 283 27.6
TWI23G0009 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 4.7e-10 70.1 272 26.8
MD17G1277700 Malus domestica HOM05D000005 ORTHO05D000012 6.2e-10 69.7 260 25.8
Dinv29641 Davidia involucrata HOM05D000005 ORTHO05D000012 8.0e-10 69.3 275 26.2
FAN27G2335 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.0e-09 68.9 265 27.2
Prupe.2G126900 Prunus persica HOM05D000005 ORTHO05D000012 1.0e-09 68.9 282 27.0
Dinv29687 Davidia involucrata HOM05D000005 ORTHO05D000012 1.8e-09 68.2 280 25.0
Prupe.3G010100 Prunus persica HOM05D000005 ORTHO05D000012 2.3e-09 67.8 282 25.9
FAN15G2828 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.1e-09 67.4 263 25.5
MD07G1079200 Malus domestica HOM05D000005 ORTHO05D000012 3.1e-09 67.4 259 24.7
FvH4_7g10520 Fragaria vesca HOM05D000005 ORTHO05D000012 4.0e-09 67.0 279 25.8
Nitab4.5_0012277g0010 Nicotiana tabacum HOM05D000005 ORTHO05D000012 4.0e-09 67.0 256 27.0
FAN27G3393 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.2e-09 66.6 265 26.4
PGSC0003DMG400013098 Solanum tuberosum HOM05D000005 ORTHO05D000012 5.2e-09 66.6 255 27.1
CSS0000854 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 6.8e-09 66.2 262 26.3
CSS0014375 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 6.8e-09 66.2 264 26.9
Dinv18662 Davidia involucrata HOM05D000005 ORTHO05D010769 1.2e-08 65.5 118 39.0
FvH4_7g10510 Fragaria vesca HOM05D000005 ORTHO05D000012 1.5e-08 65.1 280 26.1
Sopen02g010550 Solanum pennellii HOM05D000005 ORTHO05D000012 1.5e-08 65.1 279 26.5
Dinv12508 Davidia involucrata HOM05D000005 ORTHO05D000012 2.6e-08 64.3 94 43.6
Dinv38459 Davidia involucrata HOM05D000005 ORTHO05D000012 2.6e-08 64.3 276 25.4
FvH4_2g17330 Fragaria vesca HOM05D000005 ORTHO05D000012 2.6e-08 64.3 269 26.4
Thecc.06G027100 Theobroma cacao HOM05D000005 ORTHO05D000294 2.6e-08 64.3 244 25.4
Dinv38447 Davidia involucrata HOM05D000005 ORTHO05D000012 3.4e-08 63.9 243 27.6
CSS0002987 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 4.4e-08 63.5 96 43.8
Thecc.06G026300 Theobroma cacao HOM05D000005 ORTHO05D000012 4.4e-08 63.5 246 25.6
Potri.019G018800 Populus trichocarpa HOM05D000005 ORTHO05D000012 5.8e-08 63.2 261 27.6
Sopen01g045300 Solanum pennellii HOM05D000005 ORTHO05D000012 5.8e-08 63.2 253 26.1
Solyc01g102880.3 Solanum lycopersicum HOM05D000005 ORTHO05D000012 7.5e-08 62.8 255 26.3
Gorai.003G173200 Gossypium raimondii HOM05D000005 ORTHO05D000012 9.8e-08 62.4 281 25.6
Gohir.D03G163600 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.3e-07 62.0 264 26.5
Gohir.D03G163900 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.3e-07 62.0 275 26.5
Gorai.003G172400 Gossypium raimondii HOM05D000005 ORTHO05D000012 1.3e-07 62.0 264 26.5
Gorai.003G172700 Gossypium raimondii HOM05D000005 ORTHO05D000012 1.7e-07 61.6 279 26.2
Peaxi162Scf00000g00052 Petunia axillaris HOM05D000005 ORTHO05D000012 2.2e-07 61.2 256 25.8
Solyc02g032200.4 Solanum lycopersicum HOM05D000005 ORTHO05D000012 2.2e-07 61.2 279 26.5
Gohir.D03G164300 Gossypium hirsutum HOM05D000005 ORTHO05D000012 2.9e-07 60.8 278 27.0
Manes.14G165151 Manihot esculenta HOM05D000005 ORTHO05D000012 3.7e-07 60.5 256 26.2
FAN03G2198 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.9e-07 60.1 281 25.6
Gohir.D03G164800 Gossypium hirsutum HOM05D000005 ORTHO05D000012 4.9e-07 60.1 274 25.9
Prupe.8G184900 Prunus persica HOM05D000005 ORTHO05D000012 4.9e-07 60.1 286 23.1
arahy.Tifrunner.gnm1.ann1.N0928S Arachis hypogaea HOM05D000005 ORTHO05D000012 6.4e-07 59.7 67 52.2
Gorai.003G173800 Gossypium raimondii HOM05D000005 ORTHO05D000012 6.4e-07 59.7 278 26.6
MD05G1140100 Malus domestica HOM05D000005 ORTHO05D000012 6.4e-07 59.7 277 23.1
Nitab4.5_0001085g0170 Nicotiana tabacum HOM05D000005 ORTHO05D000012 6.4e-07 59.7 96 40.6
Sopen02g010920 Solanum pennellii HOM05D000005 ORTHO05D000012 6.4e-07 59.7 180 28.3
DCAR_004352 Daucus carota HOM05D000005 ORTHO05D000012 8.3e-07 59.3 284 26.8
Dinv29640 Davidia involucrata HOM05D000005 ORTHO05D000012 8.3e-07 59.3 359 23.7
CAN.G1372.2 Capsicum annuum HOM05D000005 ORTHO05D000012 1.1e-06 58.9 300 25.0
MD12G1193200 Malus domestica HOM05D000005 ORTHO05D000012 1.1e-06 58.9 274 25.2
MD15G1376100 Malus domestica HOM05D000005 ORTHO05D000012 1.1e-06 58.9 102 35.3
GSVIVG01004873001 Vitis vinifera HOM05D000005 ORTHO05D000012 1.1e-06 58.9 102 40.2
arahy.Tifrunner.gnm1.ann1.C8YHPQ Arachis hypogaea HOM05D000005 ORTHO05D000012 1.4e-06 58.5 84 47.6
CAN.G1372.3 Capsicum annuum HOM05D000005 ORTHO05D000012 1.4e-06 58.5 133 32.3
DCAR_001436 Daucus carota HOM05D000005 ORTHO05D000012 1.4e-06 58.5 283 25.4
DCAR_026632 Daucus carota HOM05D000005 ORTHO05D000012 1.4e-06 58.5 286 23.8
MD15G1375200 Malus domestica HOM05D000005 ORTHO05D000012 1.4e-06 58.5 104 35.6
Gohir.D03G163801 Gossypium hirsutum HOM05D000005 ORTHO05D000012 1.9e-06 58.2 273 24.9
MD07G1101700 Malus domestica HOM05D000005 ORTHO05D000012 1.9e-06 58.2 291 25.1
Potri.008G220200 Populus trichocarpa HOM05D000005 ORTHO05D000012 2.4e-06 57.8 94 40.4
HanXRQChr10g0298171 Helianthus annuus HOM05D000005 ORTHO05D000012 3.2e-06 57.4 245 27.8
QL10p023232 Quercus lobata HOM05D000005 ORTHO05D000012 3.2e-06 57.4 93 38.7
Thecc.05G211000 Theobroma cacao HOM05D000005 ORTHO05D000012 3.2e-06 57.4 107 37.4
Gohir.D11G295400 Gossypium hirsutum HOM05D000005 ORTHO05D000012 4.1e-06 57.0 63 50.8
Gorai.007G318900 Gossypium raimondii HOM05D000005 ORTHO05D000012 4.1e-06 57.0 63 50.8
Lsat_1_v5_gn_8_114481 Lactuca sativa HOM05D000005 ORTHO05D000012 4.1e-06 57.0 271 23.2
MD15G1375000 Malus domestica HOM05D000005 ORTHO05D000012 4.1e-06 57.0 103 34.0
QL09p052440 Quercus lobata HOM05D000005 ORTHO05D000294 4.1e-06 57.0 86 38.4
GSVIVG01004877001 Vitis vinifera HOM05D000005 ORTHO05D000012 4.1e-06 57.0 69 43.5
arahy.Tifrunner.gnm1.ann1.HCJ3IA Arachis hypogaea HOM05D000005 ORTHO05D000012 5.4e-06 56.6 133 35.3
CSS0049718 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 5.4e-06 56.6 109 37.6
FAN27G2507 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.4e-06 56.6 260 24.2
Gorai.003G174500 Gossypium raimondii HOM05D000005 ORTHO05D000012 5.4e-06 56.6 274 25.5
Thecc.05G209900 Theobroma cacao HOM05D000005 ORTHO05D000012 5.4e-06 56.6 106 35.8
A04p14590 Brassica napus HOM05D000005 ORTHO05D000449 7.0e-06 56.2 97 35.1
DCAR_029841 Daucus carota HOM05D000005 ORTHO05D000012 7.0e-06 56.2 265 25.3
Gohir.D03G164400 Gossypium hirsutum HOM05D000005 ORTHO05D000012 7.0e-06 56.2 260 25.0
Gohir.D03G164900 Gossypium hirsutum HOM05D000005 ORTHO05D000012 7.0e-06 56.2 277 25.6
Gohir.D11G295200 Gossypium hirsutum HOM05D000005 ORTHO05D000012 7.0e-06 56.2 63 47.6
Gorai.003G173900 Gossypium raimondii HOM05D000005 ORTHO05D000012 7.0e-06 56.2 260 25.0
Gorai.007G318500 Gossypium raimondii HOM05D000005 ORTHO05D000012 7.0e-06 56.2 63 47.6
Medtr7g078770 Medicago truncatula HOM05D000005 ORTHO05D000012 7.0e-06 56.2 98 42.9
Nitab4.5_0006159g0020 Nicotiana tabacum HOM05D000005 ORTHO05D000012 7.0e-06 56.2 92 41.3
Potri.019G070393 Populus trichocarpa HOM05D000005 ORTHO05D000012 7.0e-06 56.2 63 52.4
Prupe.2G126400 Prunus persica HOM05D000005 ORTHO05D000012 7.0e-06 56.2 327 23.9
TWI53G1116 Tripterygium wilfordii HOM05D000005 ORTHO05D000012 7.0e-06 56.2 60 46.7
Actinidia00144 Actinidia chinensis HOM05D000005 ORTHO05D000012 9.2e-06 55.8 90 43.3
Gohir.A11G282526 Gossypium hirsutum HOM05D000005 ORTHO05D000012 9.2e-06 55.8 63 49.2
Manes.13G002671 Manihot esculenta HOM05D000005 ORTHO05D000012 9.2e-06 55.8 109 36.7


User provided reference genes

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