Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 0.0e+00 1330.1 633 100.0
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 0.0e+00 1255.7 633 94.8
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 0.0e+00 1169.1 633 85.6
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 0.0e+00 1166.8 633 85.6
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 0.0e+00 1153.7 633 84.7
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 0.0e+00 1152.1 633 84.7
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 0.0e+00 1148.7 633 84.5
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 0.0e+00 1147.9 633 84.7
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 0.0e+00 1145.6 633 84.8
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 0.0e+00 1140.6 633 83.9
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 0.0e+00 1139.0 633 83.6
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 0.0e+00 1134.8 632 83.2
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 0.0e+00 1134.8 632 83.2
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 0.0e+00 1124.4 633 82.3
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 0.0e+00 1122.1 633 82.3
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 0.0e+00 1110.9 609 85.1
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 0.0e+00 1109.4 635 81.1
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 0.0e+00 1108.2 633 81.4
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 0.0e+00 1094.3 636 80.0
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 0.0e+00 1088.2 636 80.0
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 0.0e+00 1087.8 591 85.3
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 0.0e+00 1083.2 635 80.2
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 0.0e+00 1082.8 635 80.0
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 0.0e+00 1080.9 635 79.8
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 0.0e+00 1077.0 635 80.0
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 5.2e-311 1070.5 633 79.6
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 4.0e-308 1060.8 634 78.4
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 7.6e-307 1056.6 635 77.8
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 1.7e-306 1055.4 633 77.3
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 2.2e-306 1055.0 635 78.4
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 3.7e-306 1054.3 635 77.8
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 4.1e-305 1050.8 633 75.7
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 2.1e-304 1048.5 633 75.5
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 3.9e-303 1044.3 641 75.7
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 5.1e-303 1043.9 634 76.8
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 1.5e-302 1042.3 633 78.2
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 4.0e-300 1034.2 636 76.3
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 2.0e-299 1031.9 633 74.9
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 6.9e-292 1006.9 605 78.3
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 1.6e-288 995.7 636 73.7
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 2.4e-284 981.9 633 72.8
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 5.4e-281 970.7 622 72.3
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 6.0e-280 967.2 634 70.5
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 4.6e-256 887.9 644 65.7
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 1.4e-252 876.3 638 65.7
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 8.5e-250 867.1 638 63.8
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 2.7e-248 862.1 634 63.9
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 2.6e-246 855.5 638 64.1
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 2.4e-244 849.0 636 63.5
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 1.2e-243 846.7 636 63.2
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 2.0e-243 845.9 635 62.8
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 2.0e-243 845.9 635 62.8
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 5.0e-242 841.3 534 73.8
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 2.8e-237 825.5 639 62.0
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 1.9e-233 812.8 545 68.6
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 8.8e-231 803.9 636 60.7
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 4.1e-228 795.0 636 60.4
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 2.2e-189 666.4 640 51.2
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 1.1e-185 654.1 640 49.7
GSVIVG01002953001 Vitis vinifera HOM05D007895 ORTHO05D010017 2.6e-182 642.9 382 78.8
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 8.7e-178 627.9 642 48.4
CiPaw.09G090200 Carya illinoinensis HOM05D007895 ORTHO05D010017 9.0e-143 511.5 303 77.9
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 7.2e-132 475.3 740 36.9
CANSAT56G1122 Cannabis sativa HOM05D007895 ORTHO05D010017 8.2e-120 435.3 275 75.3
Cpa.g.sc189.18 Carica papaya HOM05D007895 ORTHO05D010017 1.0e-117 428.3 244 82.0
MSTRG.7225 Avicennia marina HOM05D007895 ORTHO05D010017 3.2e-116 423.3 271 72.7
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 1.1e-111 408.3 241 76.8
Cc00_g03030 Coffea canephora HOM05D007895 ORTHO05D010017 1.2e-110 404.8 247 74.9
AUR62021973 Chenopodium quinoa HOM05D007895 ORTHO05D010017 1.6e-107 394.4 272 67.6
Lalb_Chr15g0087521 Lupinus albus HOM05D007895 ORTHO05D010017 2.7e-107 393.7 224 82.6
AUR62012684 Chenopodium quinoa HOM05D007895 ORTHO05D010017 6.1e-107 392.5 272 67.3
Thhalv10026963m.g Eutrema salsugineum HOM05D007895 ORTHO05D010017 1.7e-104 384.4 256 70.3
AT4G21890 Arabidopsis thaliana HOM05D007895 ORTHO05D010017 8.3e-104 382.1 252 72.2
CARHR228650 Cardamine hirsuta HOM05D007895 ORTHO05D010017 3.1e-103 380.2 256 70.7
Sc05g0009090 Simmondsia chinensis HOM05D007895 ORTHO05D010017 1.5e-100 371.3 252 68.3
Aa31LG6G3880 Aethionema arabicum HOM05D007895 ORTHO05D010017 8.0e-91 339.0 255 62.7
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 8.1e-75 285.8 257 59.1
SalBow8G0130 Salvia bowleyana HOM05D007895 ORTHO05D010017 3.5e-54 217.2 170 61.8
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 6.2e-51 206.5 130 76.2
Rhsim13G0155300 Rhododendron simsii HOM05D007895 ORTHO05D013379 1.3e-45 188.7 191 55.5
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 4.9e-40 170.2 380 32.6
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 8.4e-40 169.5 387 32.3
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 1.4e-39 168.7 377 33.4
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 9.3e-39 166.0 372 32.8
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 2.7e-38 164.5 373 31.4
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 2.7e-38 164.5 380 31.6
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 2.7e-38 164.5 401 30.2
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 3.5e-38 164.1 375 31.7
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 4.6e-38 163.7 372 32.3
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 6.0e-38 163.3 377 30.8
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 6.0e-38 163.3 364 29.7
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 1.0e-37 162.5 389 30.8
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 1.0e-37 162.5 360 33.1
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 1.8e-37 161.8 388 31.7
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 2.3e-37 161.4 383 30.5
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 2.3e-37 161.4 378 31.2
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 3.9e-37 160.6 385 30.6
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 3.9e-37 160.6 383 29.8
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 3.9e-37 160.6 389 31.9
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 5.1e-37 160.2 385 30.6
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 5.1e-37 160.2 365 32.3
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 8.7e-37 159.5 382 30.4
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 1.1e-36 159.1 384 30.5
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 1.1e-36 159.1 375 31.5
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 1.1e-36 159.1 371 32.1
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 2.5e-36 157.9 378 30.2
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 2.5e-36 157.9 385 31.7
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 7.4e-36 156.4 382 32.5
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 9.7e-36 156.0 382 30.4
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 2.8e-35 154.5 375 30.1
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 3.7e-35 154.1 381 30.2
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 3.7e-35 154.1 381 30.2
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 3.7e-35 154.1 394 31.0
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 3.7e-35 154.1 380 31.1
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 4.8e-35 153.7 380 31.6
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 4.8e-35 153.7 380 29.7
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 4.8e-35 153.7 394 31.5
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 4.8e-35 153.7 372 30.9
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 4.8e-35 153.7 389 30.3
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 6.3e-35 153.3 373 31.4
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 8.2e-35 152.9 392 31.6
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 8.2e-35 152.9 388 31.2
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 8.2e-35 152.9 377 32.1
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 1.1e-34 152.5 378 28.6
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 1.4e-34 152.1 380 29.5
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 1.8e-34 151.8 380 30.3
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 4.1e-34 150.6 367 32.2
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 5.3e-34 150.2 372 32.0
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 6.9e-34 149.8 385 30.6
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 6.9e-34 149.8 398 29.6
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 6.9e-34 149.8 378 29.4
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 1.5e-33 148.7 380 29.5
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 1.5e-33 148.7 379 30.3
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 4.5e-33 147.1 381 31.2
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 4.5e-33 147.1 385 30.1
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 5.9e-33 146.7 382 29.6
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 7.6e-33 146.4 383 28.5
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 1.0e-32 146.0 373 30.8
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 1.7e-32 145.2 373 31.9
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 2.2e-32 144.8 381 30.7
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 2.2e-32 144.8 377 29.7
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 3.8e-32 144.1 377 30.0
HPP92_001781 Vanilla planifolia HOM05D007895 ORTHO05D010017 6.5e-32 143.3 129 58.1
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 1.4e-31 142.1 330 30.9
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.4e-31 142.1 382 29.6
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 1.4e-31 142.1 403 29.5
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 1.9e-31 141.7 367 30.5
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.9e-31 141.7 379 29.3
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 2.5e-31 141.4 379 29.3
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 2.5e-31 141.4 351 31.3
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 3.2e-31 141.0 382 29.6
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 3.2e-31 141.0 360 31.9
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 5.5e-31 140.2 371 31.8
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 9.3e-31 139.4 359 31.5
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 1.6e-30 138.7 361 30.7
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 2.1e-30 138.3 353 28.3
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 2.1e-30 138.3 397 28.5
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 7.9e-30 136.3 379 29.6
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 1.0e-29 136.0 400 29.8
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 1.5e-28 132.1 317 30.9
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 4.3e-28 130.6 310 31.0
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 9.7e-28 129.4 415 27.7
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 3.7e-27 127.5 240 33.3
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 8.2e-27 126.3 249 34.1
CAN.G328.16 Capsicum annuum HOM05D007895 ORTHO05D010017 5.3e-26 123.6 152 44.1
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 1.2e-25 122.5 330 30.6
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.5e-25 122.1 310 29.7
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 2.0e-25 121.7 383 27.7
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 3.4e-25 120.9 327 29.1
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 4.5e-25 120.6 306 31.0
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 5.9e-25 120.2 378 27.5
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 2.2e-24 118.2 356 28.9
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 6.1e-22 110.2 310 29.4
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 1.0e-21 109.4 230 32.2
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 5.1e-21 107.1 239 33.5
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 1.5e-20 105.5 254 31.5
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 8.2e-19 99.8 226 31.9
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 3.4e-17 94.4 373 26.3
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 5.9e-17 93.6 241 31.1
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 3.8e-16 90.9 158 36.7
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 5.7e-12 77.0 218 28.0
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 1.7e-11 75.5 96 42.7
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 5.0e-08 63.9 298 25.5


User provided reference genes

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