Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.7e-64 249.2 128 100.0
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 6.7e-53 210.7 128 85.9
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 9.6e-52 206.8 128 83.6
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 7.7e-41 170.6 124 71.0
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 6.5e-40 167.5 129 66.7
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 7.2e-39 164.1 122 69.7
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 3.6e-38 161.8 122 64.8
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 1.0e-37 160.2 122 66.4
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 2.3e-37 159.1 122 63.9
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 1.1e-36 156.8 131 64.1
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.5e-36 156.4 128 63.3
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 1.4e-34 149.8 129 60.5
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 4.1e-34 148.3 131 58.8
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 1.0e-32 143.7 132 56.8
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 6.5e-32 141.0 132 55.3
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 1.9e-31 139.4 128 58.6
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 2.5e-31 139.0 132 56.8
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 4.2e-31 138.3 112 63.4
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 9.4e-31 137.1 115 60.9
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.1e-30 136.0 113 61.1
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 1.0e-29 133.7 107 63.6
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 2.3e-29 132.5 118 57.6
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 6.7e-29 131.0 113 61.9
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 4.4e-28 128.3 111 57.7
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 5.7e-28 127.9 113 54.0
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 5.7e-28 127.9 113 54.0
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.3e-27 126.7 111 55.9
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.2e-27 125.9 113 53.1
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 3.1e-26 122.1 132 50.0
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 4.1e-26 121.7 114 55.3
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 4.1e-26 121.7 134 50.0
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 9.1e-26 120.6 121 55.4
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 2.0e-25 119.4 131 52.7
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 2.9e-24 115.5 115 55.7
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 5.5e-23 111.3 121 52.9
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 7.2e-23 110.9 134 47.0
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 7.2e-23 110.9 108 58.3
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 9.4e-23 110.5 108 51.9
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 9.4e-23 110.5 120 50.0
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 9.4e-23 110.5 125 46.4
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 2.7e-22 109.0 119 52.1
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 4.7e-22 108.2 125 45.6
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 6.1e-22 107.8 119 51.3
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 6.1e-22 107.8 110 53.6
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 6.1e-22 107.8 110 53.6
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 6.1e-22 107.8 121 49.6
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 2.3e-21 105.9 125 47.2
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 2.3e-21 105.9 110 52.7
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 5.2e-21 104.8 113 47.8
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 8.8e-21 104.0 114 49.1
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 8.8e-21 104.0 123 48.8
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 2.0e-20 102.8 114 49.1
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 3.3e-20 102.1 115 47.0
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 3.3e-20 102.1 125 49.6
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 7.4e-20 100.9 117 48.7
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 7.4e-20 100.9 113 47.8
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.3e-19 100.1 114 48.2
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 1.3e-19 100.1 126 45.2
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 2.2e-19 99.4 126 45.2
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 3.7e-19 98.6 119 47.9
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 3.7e-19 98.6 105 55.2
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 3.7e-19 98.6 111 47.7
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 4.8e-19 98.2 128 46.1
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 4.8e-19 98.2 125 44.8
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 6.3e-19 97.8 115 47.0
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 7.0e-18 94.4 126 46.0
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 9.1e-18 94.0 124 46.0
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 1.2e-17 93.6 107 51.4
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 1.6e-17 93.2 113 45.1
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 2.6e-17 92.4 110 48.2
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 4.5e-17 91.7 121 45.5
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 5.9e-17 91.3 129 46.5
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 7.7e-17 90.9 126 44.4
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 1.3e-16 90.1 122 45.9
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 3.8e-16 88.6 111 42.3
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 6.5e-16 87.8 109 45.0
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 6.5e-16 87.8 113 43.4
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 1.9e-15 86.3 114 43.0
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 7.2e-15 84.3 113 42.5
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 7.2e-15 84.3 128 43.0
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 1.2e-14 83.6 120 40.8
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 2.1e-14 82.8 113 46.0
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.7e-14 82.4 128 42.2
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 2.7e-14 82.4 107 47.7
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 1.0e-13 80.5 95 52.6
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 1.0e-13 80.5 113 45.1
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 2.3e-13 79.3 111 42.3
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 3.0e-13 79.0 108 48.1
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 3.0e-13 79.0 108 48.1
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 3.0e-13 79.0 110 44.5
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 4.0e-13 78.6 123 40.7
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 4.0e-13 78.6 120 42.5
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 2.6e-12 75.9 109 45.0
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 3.4e-12 75.5 128 38.3
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 7.5e-12 74.3 115 41.7
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 7.5e-12 74.3 118 39.0
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 9.8e-12 73.9 115 42.6
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 9.8e-12 73.9 115 42.6
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.7e-11 73.2 128 37.5
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 2.2e-11 72.8 107 44.9
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 2.8e-11 72.4 108 41.7
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 3.7e-11 72.0 110 41.8
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 4.8e-11 71.6 104 38.5
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 6.3e-11 71.2 111 43.2
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 6.3e-11 71.2 114 41.2
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 8.3e-11 70.9 114 42.1
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 1.1e-10 70.5 126 35.7
Gohir.A04G019200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.4e-10 70.1 115 40.9
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 1.4e-10 70.1 127 34.6
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 1.4e-10 70.1 117 37.6
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 1.8e-10 69.7 136 39.0
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 2.4e-10 69.3 132 34.1
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 3.1e-10 68.9 122 35.2
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 4.1e-10 68.6 127 39.4
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 4.1e-10 68.6 106 39.6
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 7.0e-10 67.8 117 41.9
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 9.1e-10 67.4 126 34.1
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 9.1e-10 67.4 109 39.4
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 9.1e-10 67.4 120 35.0
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 5.9e-09 64.7 130 33.8
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 5.9e-09 64.7 121 38.0
DCAR_008138 Daucus carota HOM05D004992 ORTHO05D006004 7.7e-09 64.3 125 34.4
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 1.0e-08 63.9 118 37.3
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 1.0e-08 63.9 118 37.3
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 1.0e-08 63.9 118 37.3
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 1.0e-08 63.9 127 36.2
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.3e-08 63.5 122 32.8
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 1.7e-08 63.2 99 44.4
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 2.2e-08 62.8 130 33.1
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 2.2e-08 62.8 121 38.0
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 2.9e-08 62.4 126 38.1
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 2.9e-08 62.4 117 41.0
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 3.8e-08 62.0 99 42.4
Oeu037355.1 Olea europaea HOM05D004992 ORTHO05D006004 3.8e-08 62.0 109 38.5
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 6.5e-08 61.2 130 34.6
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 6.5e-08 61.2 106 36.8
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 8.5e-08 60.8 116 35.3
DCAR_010042 Daucus carota HOM05D004992 ORTHO05D006004 1.1e-07 60.5 129 32.6
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 1.9e-07 59.7 99 38.4
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 2.5e-07 59.3 126 31.7
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 3.2e-07 58.9 111 34.2
GSVIVG01002002001 Vitis vinifera HOM05D004992 ORTHO05D006004 5.5e-07 58.2 113 36.3
Sed0003497 Sechium edule HOM05D004992 ORTHO05D006004 9.4e-07 57.4 109 37.6
PGSC0003DMG400014425 Solanum tuberosum HOM05D000017 ORTHO05D001349 2.1e-06 56.2 141 34.8


User provided reference genes

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