Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 1.0e-62 243.8 185 100.0
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 5.9e-50 201.4 185 75.1
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 2.6e-37 159.5 186 67.7
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 2.6e-37 159.5 186 72.0
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 1.5e-24 117.1 79 70.9
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 2.5e-24 116.3 79 72.2
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 3.2e-24 115.9 81 67.9
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 4.2e-24 115.5 82 68.3
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 7.2e-24 114.8 81 69.1
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 7.2e-24 114.8 79 69.6
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 9.4e-24 114.4 79 68.4
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 9.4e-24 114.4 83 65.1
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 9.4e-24 114.4 79 68.4
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 9.4e-24 114.4 79 68.4
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 1.2e-23 114.0 82 65.9
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 1.6e-23 113.6 81 67.9
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 1.6e-23 113.6 81 67.9
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 1.6e-23 113.6 82 65.9
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 2.1e-23 113.2 79 68.4
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 2.1e-23 113.2 80 66.2
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 3.6e-23 112.5 81 66.7
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 3.6e-23 112.5 79 68.4
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 3.6e-23 112.5 82 67.1
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 6.1e-23 111.7 80 66.2
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 6.1e-23 111.7 79 68.4
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 8.0e-23 111.3 82 67.1
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 1.0e-22 110.9 79 67.1
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 1.4e-22 110.5 79 65.8
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 1.4e-22 110.5 81 65.4
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 2.3e-22 109.8 82 63.4
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 2.3e-22 109.8 79 64.6
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 3.0e-22 109.4 81 66.7
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 4.0e-22 109.0 78 66.7
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 4.0e-22 109.0 78 66.7
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 5.2e-22 108.6 80 65.0
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 6.7e-22 108.2 81 66.7
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 6.7e-22 108.2 78 66.7
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 6.7e-22 108.2 78 66.7
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 6.7e-22 108.2 107 50.5
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 8.8e-22 107.8 79 64.6
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 8.8e-22 107.8 80 63.8
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 1.2e-21 107.5 81 64.2
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 1.5e-21 107.1 79 64.6
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 1.5e-21 107.1 79 62.0
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 2.0e-21 106.7 81 61.7
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 2.6e-21 106.3 80 63.8
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 4.4e-21 105.5 80 62.5
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 5.7e-21 105.1 81 60.5
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 5.7e-21 105.1 83 59.0
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 5.7e-21 105.1 79 62.0
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 7.5e-21 104.8 82 61.0
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 9.7e-21 104.4 77 64.9
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 9.7e-21 104.4 79 64.6
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 9.7e-21 104.4 80 65.0
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 1.3e-20 104.0 83 63.9
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 1.3e-20 104.0 81 61.7
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 1.3e-20 104.0 81 61.7
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 1.3e-20 104.0 78 65.4
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 1.3e-20 104.0 82 59.8
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 1.7e-20 103.6 81 61.7
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 1.7e-20 103.6 81 60.5
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 1.7e-20 103.6 81 60.5
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 1.7e-20 103.6 81 63.0
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 1.7e-20 103.6 83 60.2
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 2.2e-20 103.2 82 61.0
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 2.8e-20 102.8 82 58.5
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 2.8e-20 102.8 79 64.6
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 3.7e-20 102.4 81 58.0
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 6.3e-20 101.7 80 58.8
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 6.3e-20 101.7 81 61.7
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 8.2e-20 101.3 83 66.3
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 1.1e-19 100.9 77 63.6
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 1.4e-19 100.5 80 60.0
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 1.4e-19 100.5 79 62.0
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 2.4e-19 99.8 84 61.9
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 2.4e-19 99.8 80 58.8
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 2.4e-19 99.8 83 61.4
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 3.1e-19 99.4 79 60.8
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 3.1e-19 99.4 79 60.8
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 3.1e-19 99.4 84 61.9
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 4.1e-19 99.0 79 60.8
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 4.1e-19 99.0 83 55.4
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 5.3e-19 98.6 76 63.2
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 5.3e-19 98.6 83 62.7
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 7.0e-19 98.2 80 60.0
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 9.1e-19 97.8 83 62.7
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 9.1e-19 97.8 83 62.7
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 1.2e-18 97.4 83 60.2
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 1.2e-18 97.4 83 59.0
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 1.2e-18 97.4 83 62.7
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 1.6e-18 97.1 80 56.2
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 1.6e-18 97.1 80 56.2
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 1.6e-18 97.1 84 58.3
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 2.0e-18 96.7 78 59.0
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 2.0e-18 96.7 84 58.3
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 2.0e-18 96.7 83 59.0
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 2.7e-18 96.3 81 54.3
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 3.5e-18 95.9 81 58.0
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 3.5e-18 95.9 74 62.2
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 4.5e-18 95.5 80 55.0
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 4.5e-18 95.5 79 54.4
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 5.9e-18 95.1 84 59.5
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 1.0e-17 94.4 82 58.5
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 1.3e-17 94.0 79 55.7
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 1.3e-17 94.0 79 58.2
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 1.7e-17 93.6 80 55.0
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 1.7e-17 93.6 84 56.0
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 2.2e-17 93.2 81 55.6
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 2.9e-17 92.8 79 57.0
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 2.9e-17 92.8 72 61.1
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 3.8e-17 92.4 71 62.0
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 3.8e-17 92.4 81 55.6
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 6.5e-17 91.7 79 57.0
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 6.5e-17 91.7 79 57.0
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 8.5e-17 91.3 79 55.7
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 8.5e-17 91.3 69 63.8
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 8.5e-17 91.3 69 63.8
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 1.5e-16 90.5 79 55.7
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 1.9e-16 90.1 80 53.8
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 1.9e-16 90.1 83 56.6
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 2.5e-16 89.7 76 53.9
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 3.2e-16 89.4 78 59.0
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 4.2e-16 89.0 81 55.6
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 5.5e-16 88.6 81 49.4
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 5.5e-16 88.6 84 54.8
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.7e-15 86.3 79 57.0
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 3.6e-15 85.9 79 49.4
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 4.7e-15 85.5 80 51.2
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 8.0e-15 84.7 79 49.4
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 1.4e-14 84.0 77 53.2
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 2.3e-14 83.2 77 55.8
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 6.8e-14 81.6 73 57.5
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 8.8e-14 81.3 78 53.8
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 3.4e-13 79.3 55 69.1
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 3.4e-13 79.3 56 57.1
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.3e-12 77.4 77 51.9
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.3e-12 77.4 77 51.9
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 1.7e-12 77.0 75 52.0
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 7.0e-11 71.6 81 40.7
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 9.1e-11 71.2 71 49.3
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 9.1e-11 71.2 71 49.3
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 9.1e-11 71.2 59 55.9
Cre16.g687294 Chlamydomonas reinhardtii HOM05D005289 ORTHO05D006346 1.0e-09 67.8 76 46.1


User provided reference genes

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