Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 2.7e-268 928.3 551 100.0
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 2.4e-232 808.9 661 73.8
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 4.1e-200 701.8 575 75.5
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 9.2e-200 700.7 563 76.2
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 5.8e-186 654.8 572 69.1
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 1.7e-182 643.3 569 69.6
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 3.9e-182 642.1 574 69.2
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 3.4e-178 629.0 561 72.0
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 5.8e-178 628.2 563 67.7
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 1.7e-177 626.7 580 64.3
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 2.2e-177 626.3 567 67.9
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 1.9e-176 623.2 571 66.4
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 4.1e-176 622.1 540 68.7
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 1.2e-175 620.5 567 68.1
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 1.6e-175 620.2 560 67.9
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 5.1e-174 615.1 541 69.5
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 6.6e-174 614.8 569 65.0
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 1.5e-173 613.6 541 69.3
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 3.3e-173 612.5 563 68.2
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 9.5e-173 610.9 558 67.2
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 1.6e-172 610.1 565 68.5
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 6.2e-172 608.2 557 67.1
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 1.1e-171 607.4 574 67.4
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 2.3e-171 606.3 563 64.8
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 6.8e-171 604.7 582 67.0
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 6.4e-169 598.2 566 65.2
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.4e-168 597.0 516 71.5
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 5.4e-168 595.1 582 63.2
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 5.1e-166 588.6 542 66.8
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 1.1e-165 587.4 572 62.2
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 9.6e-165 584.3 561 64.5
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 2.4e-163 579.7 575 64.7
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 3.1e-163 579.3 554 65.3
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 3.1e-163 579.3 551 67.7
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 5.2e-163 578.6 539 66.0
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 8.9e-163 577.8 568 66.0
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 1.2e-162 577.4 543 65.7
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 2.9e-161 572.8 549 65.0
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 3.8e-161 572.4 563 65.0
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 2.4e-160 569.7 566 64.7
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 3.5e-159 565.8 510 67.8
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 1.7e-158 563.5 563 66.1
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 2.3e-158 563.1 538 65.2
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 3.9e-158 562.4 559 63.3
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 2.1e-156 556.6 570 60.4
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 2.8e-156 556.2 568 65.1
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 2.0e-154 550.1 598 61.2
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 3.8e-153 545.8 607 56.5
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 5.4e-152 542.0 521 62.6
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 2.1e-151 540.0 546 63.7
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 6.0e-151 538.5 513 62.6
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 1.0e-150 537.7 511 64.4
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 1.3e-150 537.3 574 60.6
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 2.5e-149 533.1 487 68.2
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 6.2e-148 528.5 522 64.9
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 1.4e-147 527.3 484 66.5
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 1.4e-147 527.3 576 59.7
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 2.4e-147 526.6 592 56.6
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 5.3e-147 525.4 569 61.5
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 2.2e-145 520.0 542 60.9
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 1.1e-144 517.7 518 63.7
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 3.9e-142 509.2 575 57.0
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 1.5e-141 507.3 539 57.9
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 2.5e-141 506.5 548 60.9
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 8.2e-140 501.5 525 57.9
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 3.1e-139 499.6 478 64.2
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 1.2e-138 497.7 458 69.0
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 1.5e-138 497.3 569 57.1
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 2.6e-138 496.5 453 68.2
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 7.1e-136 488.4 469 61.4
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 3.5e-135 486.1 570 57.0
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 1.9e-133 480.3 480 62.9
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 2.5e-133 479.9 565 57.0
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 3.3e-133 479.6 532 57.9
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 2.8e-132 476.5 559 54.2
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 8.2e-132 474.9 578 54.2
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 1.1e-131 474.6 550 55.1
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 3.1e-131 473.0 574 55.4
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 9.0e-131 471.5 548 57.5
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 1.3e-129 467.6 532 58.3
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 3.2e-128 463.0 541 53.0
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 1.2e-127 461.1 553 51.9
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 2.7e-127 459.9 532 62.0
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 1.1e-125 454.5 556 60.1
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 2.5e-125 453.4 547 56.5
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 9.7e-125 451.4 322 76.7
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 3.7e-124 449.5 530 52.3
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 4.8e-124 449.1 547 56.7
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 7.7e-122 441.8 426 64.8
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 2.5e-120 436.8 444 63.1
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 3.6e-119 433.0 325 72.3
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 1.8e-118 430.6 536 59.5
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 1.1e-115 421.4 538 55.8
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 5.3e-115 419.1 481 54.1
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 6.9e-115 418.7 532 55.3
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 5.9e-114 415.6 532 55.1
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 5.9e-114 415.6 532 55.1
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 7.7e-114 415.2 534 55.8
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 1.7e-113 414.1 321 72.9
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 1.4e-112 411.0 514 57.2
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 2.6e-109 400.2 347 68.0
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 8.0e-87 325.5 218 83.0
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 1.8e-86 324.3 480 50.2
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 3.7e-84 316.6 352 62.5
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 3.1e-83 313.5 214 80.8
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 8.6e-81 305.4 232 67.7
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 4.3e-80 303.1 216 75.0
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 2.9e-68 263.8 224 64.3
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 3.2e-67 260.4 237 61.6
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 7.0e-67 259.2 222 63.1
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 2.0e-66 257.7 223 61.9
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 2.3e-62 244.2 268 54.5
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 1.7e-57 228.0 297 46.8
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 1.8e-54 218.0 238 54.2
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 2.0e-53 214.5 167 70.1
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 3.9e-49 200.3 224 54.9
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 3.1e-46 190.7 168 65.5
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 2.6e-45 187.6 613 34.7
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 1.3e-44 185.3 148 69.6
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 5.4e-43 179.9 285 40.7
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 1.9e-40 171.4 273 40.7
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 1.8e-38 164.9 205 45.4
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 7.6e-37 159.5 270 39.3
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 1.8e-33 148.3 110 73.6
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 1.8e-33 148.3 188 52.7
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 3.3e-32 144.1 194 47.4
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 4.0e-30 137.1 162 48.8
Psat0s1227g0080 Pisum sativum HOM05D000020 ORTHO05D015801 4.5e-29 133.7 123 62.6
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 1.4e-27 128.6 103 71.8
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 6.9e-22 109.8 74 78.4
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 1.2e-21 109.0 94 60.6
SEGI_18721 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 4.2e-19 100.5 91 57.1
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 6.0e-18 96.7 133 46.6
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 2.3e-17 94.7 113 56.6
FAN12G4029 Fragaria x ananassa HOM05D002474 ORTHO05D007142 3.9e-17 94.0 108 55.6
DCAR_030620 Daucus carota HOM05D004479 ORTHO05D005597 3.3e-16 90.9 101 56.4
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 4.3e-16 90.5 152 40.1
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 1.3e-15 89.0 215 38.1
Psat7g008520 Pisum sativum HOM05D004479 ORTHO05D005597 3.1e-14 84.3 87 55.2
Psat0s2660g0040 Pisum sativum HOM05D000020 ORTHO05D015801 1.5e-13 82.0 73 58.9
SHI42976 Sapria himalayana HOM05D004479 ORTHO05D005597 1.3e-12 79.0 116 44.0
SHI31116 Sapria himalayana HOM05D004479 ORTHO05D005597 1.7e-12 78.6 66 60.6
SHI50578 Sapria himalayana HOM05D004479 ORTHO05D005597 2.2e-12 78.2 249 32.9
Haze_16261 Corylus avellana HOM05D004479 ORTHO05D029161 6.5e-12 76.6 68 66.2
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 1.1e-11 75.9 69 55.1
COL.COLO4_18371 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.4e-11 75.5 68 55.9
COL.COLO4_27264 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.2e-10 72.4 73 50.7
SHI31115 Sapria himalayana HOM05D004479 ORTHO05D005597 1.2e-10 72.4 44 79.5
Psat3g175600 Pisum sativum HOM05D004479 ORTHO05D005597 1.6e-10 72.0 64 62.5
Haze_18674 Corylus avellana HOM05D004479 ORTHO05D005597 2.1e-10 71.6 40 87.5
SHI49595 Sapria himalayana HOM05D004479 ORTHO05D005597 2.1e-10 71.6 113 43.4
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 3.6e-10 70.9 39 87.2
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 3.6e-10 70.9 39 87.2
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 3.6e-10 70.9 39 87.2
SHI34972 Sapria himalayana HOM05D004479 ORTHO05D005597 6.7e-09 66.6 255 27.8
Hma1.2p1_0370F.1_g138010 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 2.5e-08 64.7 74 59.5
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 3.3e-08 64.3 42 73.8
Nitab4.5_0005739g0060 Nicotiana tabacum HOM05D004479 ORTHO05D029161 4.3e-08 63.9 102 46.1
QL08p038027 Quercus lobata HOM05D004479 ORTHO05D337893 1.7e-07 62.0 43 74.4
SHI13126 Sapria himalayana HOM05D000105 ORTHO05D000023 2.2e-07 61.6 53 62.3
SHI36675 Sapria himalayana HOM05D004479 ORTHO05D005597 2.8e-07 61.2 54 61.1
BcaC02g11491 Brassica carinata HOM05D019637 ORTHO05D018695 4.8e-07 60.5 40 82.5
C04p14790 Brassica napus HOM05D004479 ORTHO05D018695 4.8e-07 60.5 40 82.5
BolC4t23053H Brassica oleracea HOM05D004479 ORTHO05D018695 4.8e-07 60.5 40 82.5
Psat0s1227g0040 Pisum sativum HOM05D000280 ORTHO05D015801 1.1e-06 59.3 58 55.2
Cpa.g.sc1515.1 Carica papaya HOM05D004479 ORTHO05D005597 4.1e-06 57.4 42 83.3
Lj5C22T9 Lonicera japonica HOM05D004479 ORTHO05D029161 9.1e-06 56.2 69 59.4


User provided reference genes

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