Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G240401 Populus trichocarpa HOM05D007506 ORTHO05D008409 9.1e-30 133.3 86 100.0
Potri.008G016801 Populus trichocarpa HOM05D007506 ORTHO05D008409 2.2e-20 102.1 86 79.1
CiPaw.14G033800 Carya illinoinensis HOM05D007506 ORTHO05D008409 2.7e-18 95.1 84 73.8
Sabra08G0010500 Salix brachista HOM05D007506 ORTHO05D008409 2.7e-18 95.1 81 76.5
Sabra10G0188200 Salix brachista HOM05D007506 ORTHO05D008409 6.8e-17 90.5 82 70.7
Manes.07G086800 Manihot esculenta HOM05D007506 ORTHO05D008409 1.5e-16 89.4 60 85.0
RcHm_v2.0_Chr1g0331731 Rosa chinensis HOM05D007506 ORTHO05D008409 1.3e-15 86.3 85 60.0
Ciclev10017346m.g Citrus clementina HOM05D007506 ORTHO05D008409 6.3e-15 84.0 58 84.5
Atru.chr12.1049 Acer truncatum HOM05D007506 ORTHO05D008409 8.3e-15 83.6 57 82.5
Haze_03301 Corylus avellana HOM05D007506 ORTHO05D008409 8.3e-15 83.6 60 78.3
PGR142G2547 Punica granatum HOM05D007506 ORTHO05D008409 1.1e-14 83.2 86 70.9
QL04p046828 Quercus lobata HOM05D007506 ORTHO05D008409 1.4e-14 82.8 85 65.9
Duzib106G0675 Durio zibethinus HOM05D007506 ORTHO05D008409 9.1e-14 80.1 63 74.6
Thecc.10G114000 Theobroma cacao HOM05D007506 ORTHO05D008409 1.2e-13 79.7 61 77.0
Manes.10G062500 Manihot esculenta HOM05D007506 ORTHO05D008409 1.6e-13 79.3 82 69.5
THA.LOC104816468 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 2.7e-13 78.6 89 58.4
THA.LOC109117254 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 5.9e-13 77.4 92 55.4
Cpa.g.sc54.9 Carica papaya HOM05D007506 ORTHO05D008409 3.8e-12 74.7 54 79.6
TWI38G1985 Tripterygium wilfordii HOM05D007506 ORTHO05D008409 6.6e-12 73.9 87 66.7
Ca_25653_v3 Cicer arietinum L. HOM05D007506 ORTHO05D008409 8.6e-12 73.6 87 65.5
CANSAT56G4328 Cannabis sativa HOM05D007506 ORTHO05D008409 9.5e-11 70.1 83 61.4
Migut.F00865 Erythranthe guttata HOM05D007506 ORTHO05D008409 1.6e-10 69.3 64 65.6
GSVIVG01010679001 Vitis vinifera HOM05D007506 ORTHO05D008409 2.8e-10 68.6 41 87.8
Medtr1g111840 Medicago truncatula HOM05D007506 ORTHO05D008409 3.6e-10 68.2 86 58.1
CDE12G0642 Ceratophyllum demersum HOM05D007506 ORTHO05D008409 4.7e-10 67.8 64 68.8
TAR633G2594 Trochodendron aralioides HOM05D007506 ORTHO05D008409 4.7e-10 67.8 62 64.5
Aqoxy7G00781 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 6.1e-10 67.4 63 65.1
Dinv12843 Davidia involucrata HOM05D007506 ORTHO05D008409 6.1e-10 67.4 65 63.1
FvH4_7g05151 Fragaria vesca HOM05D007506 ORTHO05D008409 6.1e-10 67.4 82 53.7
Cfa010331 Carpinus fangiana HOM05D007506 ORTHO05D008409 8.0e-10 67.0 50 74.0
MD07G1070900 Malus domestica HOM05D007506 ORTHO05D008409 8.0e-10 67.0 72 70.8
Hund06790 Selenicereus undatus HOM05D007506 ORTHO05D008409 1.0e-09 66.6 81 56.8
CiPaw.13G041100 Carya illinoinensis HOM05D007506 ORTHO05D008409 1.4e-09 66.2 37 86.5
MELO3C019903.2 Cucumis melo HOM05D007506 ORTHO05D008409 1.4e-09 66.2 55 69.1
ClCG08G008330 Citrullus lanatus HOM05D007506 ORTHO05D008409 1.8e-09 65.9 55 69.1
SalBow3G3829 Salvia bowleyana HOM05D007506 ORTHO05D008409 1.8e-09 65.9 46 71.7
FAN08G2571 Fragaria x ananassa HOM05D007506 ORTHO05D008409 2.3e-09 65.5 81 54.3
FAN05G5073 Fragaria x ananassa HOM05D007506 ORTHO05D008409 4.0e-09 64.7 82 52.4
Lalb_Chr02g0146201 Lupinus albus HOM05D007506 ORTHO05D008409 5.2e-09 64.3 88 62.5
CSS0050385 Camellia sinensis var. sinensis HOM05D007506 ORTHO05D008409 6.8e-09 63.9 57 70.2
CARHR208540 Cardamine hirsuta HOM05D012863 ORTHO05D008409 6.8e-09 63.9 71 62.0
FAN28G2052 Fragaria x ananassa HOM05D007506 ORTHO05D008409 6.8e-09 63.9 83 55.4
MBI17_g08330_MAGBIO Magnolia biondii HOM05D007506 ORTHO05D008409 6.8e-09 63.9 60 63.3
AT5G04750 Arabidopsis thaliana HOM05D012863 ORTHO05D008409 8.9e-09 63.5 67 61.2
Cc02_g09560 Coffea canephora HOM05D007506 ORTHO05D008409 8.9e-09 63.5 58 70.7
Nitab4.5_0002586g0040 Nicotiana tabacum HOM05D007506 ORTHO05D008409 8.9e-09 63.5 64 60.9
CsaV3_6G004310 Cucumis sativus L. HOM05D007506 ORTHO05D008409 1.2e-08 63.2 55 69.1
Glyma.10G277900 Glycine max HOM05D007506 ORTHO05D008409 1.2e-08 63.2 87 51.7
Peaxi162Scf00519g00621 Petunia axillaris HOM05D007506 ORTHO05D008409 4.4e-08 61.2 56 64.3
Sc20g0001140 Simmondsia chinensis HOM05D007506 ORTHO05D008409 5.7e-08 60.8 57 75.4
Os02g0533800 Oryza sativa ssp. japonica HOM05D007506 ORTHO05D008409 7.5e-08 60.5 63 57.1
COL.COLO4_37375 Corchorus olitorius HOM05D007506 ORTHO05D008409 9.8e-08 60.1 52 71.2
Zm00001eb242800 Zea mays HOM05D007506 ORTHO05D008409 9.8e-08 60.1 42 76.2
Lj5g0016646 Lotus japonicus HOM05D007506 ORTHO05D008409 1.3e-07 59.7 84 65.5
Nitab4.5_0010633g0010 Nicotiana tabacum HOM05D007506 ORTHO05D008409 1.7e-07 59.3 56 57.1
Os08g0558900 Oryza sativa ssp. japonica HOM05D007506 ORTHO05D008409 1.7e-07 59.3 60 63.3
VMungo0720G0153 Vigna mungo HOM05D007506 ORTHO05D008409 1.7e-07 59.3 84 47.6
Hma1.2p1_0756F.1_g213210 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 2.2e-07 58.9 58 58.6
Hma1.2p1_0756F.1_g213215 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 2.2e-07 58.9 58 58.6
Hma1.2p1_1491F.1_g286710 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 2.2e-07 58.9 58 58.6
Phvul.007G023500 Phaseolus vulgaris HOM05D007506 ORTHO05D008409 2.2e-07 58.9 64 68.8
unitig_899.g14468 Utricularia gibba HOM05D007506 ORTHO05D008409 2.2e-07 58.9 40 75.0
Zm00001eb252110 Zea mays HOM05D000188 ORTHO05D003976 2.2e-07 58.9 61 60.7
Carub.0006s0364 Capsella rubella HOM05D012863 ORTHO05D008409 2.8e-07 58.5 92 48.9
PSO801G0534 Papaver somniferum HOM05D007506 ORTHO05D008409 2.8e-07 58.5 85 48.2
SEGI_39886 Sequoiadendron giganteum HOM05D007506 ORTHO05D008409 2.8e-07 58.5 62 54.8
HPP92_013812 Vanilla planifolia HOM05D007506 ORTHO05D008409 2.8e-07 58.5 56 57.1
Oeu024806.1 Olea europaea HOM05D007506 ORTHO05D008409 3.7e-07 58.2 61 57.4
Glyma.20G110900 Glycine max HOM05D007506 ORTHO05D008409 4.9e-07 57.8 87 48.3
Nitab4.5_0005214g0030 Nicotiana tabacum HOM05D007506 ORTHO05D008409 4.9e-07 57.8 56 57.1
FAN03G1835 Fragaria x ananassa HOM05D007506 ORTHO05D008409 6.3e-07 57.4 82 50.0
Aqoxy7G00782 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 8.3e-07 57.0 62 62.9
EL10Ac4g08692 Beta vulgaris HOM05D007506 ORTHO05D008409 8.3e-07 57.0 61 62.3
FAN01G2227 Fragaria x ananassa HOM05D002241 ORTHO05D002458 8.3e-07 57.0 69 53.6
Lalb_Chr06g0166331 Lupinus albus HOM05D007506 ORTHO05D008409 8.3e-07 57.0 78 50.0
PSO339G4482 Papaver somniferum HOM05D007506 ORTHO05D008409 8.3e-07 57.0 85 47.1
Psat6g238400 Pisum sativum HOM05D007506 ORTHO05D008409 8.3e-07 57.0 59 71.2
TPR.G2499 Trifolium pratense HOM05D007506 ORTHO05D008409 8.3e-07 57.0 58 70.7
AL6G14410 Arabidopsis lyrata HOM05D012863 ORTHO05D008409 1.4e-06 56.2 90 47.8
HanXRQChr12g0368271 Helianthus annuus HOM05D021830 ORTHO05D008409 1.4e-06 56.2 58 58.6
Sed0023104 Sechium edule HOM05D007506 ORTHO05D008409 1.4e-06 56.2 56 62.5
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.1e-06 55.1 43 65.1
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 4.1e-06 54.7 47 63.8
MD11G1004700 Malus domestica HOM05D007506 ORTHO05D008409 4.1e-06 54.7 43 67.4
CAN.G1373.1 Capsicum annuum HOM05D007506 ORTHO05D008409 5.4e-06 54.3 39 71.8
CDE07G1652 Ceratophyllum demersum HOM05D057737 ORTHO05D008409 5.4e-06 54.3 68 45.6
SGA_v2.0_scaffold62G21316 Striga asiatica HOM05D007506 ORTHO05D008409 5.4e-06 54.3 31 87.1
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 7.0e-06 53.9 40 75.0
Peaxi162Scf00125g00216 Petunia axillaris HOM05D007506 ORTHO05D008409 9.2e-06 53.5 38 68.4
Sp6g38070 Schrenkiella parvula HOM05D012863 ORTHO05D008409 9.2e-06 53.5 73 54.8
Sopen11g002680 Solanum pennellii HOM05D007506 ORTHO05D008409 9.2e-06 53.5 57 56.1


User provided reference genes

Program Settings