Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G240300 Populus trichocarpa HOM05D006601 ORTHO05D008281 8.8e-104 380.6 231 100.0
Potri.008G019100 Populus trichocarpa HOM05D006601 ORTHO05D008281 3.5e-84 315.5 173 90.8
Sabra10G0188100 Salix brachista HOM05D006601 ORTHO05D008281 1.4e-80 303.5 258 68.6
Gohir.A05G287400 Gossypium hirsutum HOM05D006601 ORTHO05D008281 5.9e-76 288.1 201 72.6
Gohir.D05G288500 Gossypium hirsutum HOM05D006601 ORTHO05D008281 2.9e-75 285.8 201 71.6
Gorai.009G303600 Gossypium raimondii HOM05D006601 ORTHO05D008281 2.9e-75 285.8 201 71.6
Manes.10G062700 Manihot esculenta HOM05D006601 ORTHO05D008281 1.9e-74 283.1 171 82.5
Thecc.10G114200 Theobroma cacao HOM05D006601 ORTHO05D008281 4.3e-74 282.0 171 82.5
COL.COLO4_03655 Corchorus olitorius HOM05D006601 ORTHO05D008281 8.0e-73 277.7 201 71.6
Duzib114G0052 Durio zibethinus HOM05D006601 ORTHO05D008281 1.4e-72 276.9 210 68.6
Atru.chr12.1047 Acer truncatum HOM05D006601 ORTHO05D008281 1.7e-70 270.0 173 76.9
THA.LOC104823558 Tarenaya hassleriana HOM05D006601 ORTHO05D008281 1.7e-70 270.0 173 75.1
Rhsim09G0141800 Rhododendron simsii HOM05D006601 ORTHO05D008281 2.9e-70 269.2 202 68.8
TWI38G1517 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 8.3e-70 267.7 174 75.9
Cfa010329 Carpinus fangiana HOM05D006601 ORTHO05D008281 2.4e-69 266.2 171 76.6
GSVIVG01010682001 Vitis vinifera HOM05D006601 ORTHO05D008281 9.2e-69 264.2 172 75.6
TAR633G2162 Trochodendron aralioides HOM05D006601 ORTHO05D008281 1.6e-68 263.5 172 74.4
A09p45280 Brassica napus HOM05D006601 ORTHO05D008281 4.6e-68 261.9 163 77.3
BraA09t39991Z Brassica rapa HOM05D006601 ORTHO05D008281 4.6e-68 261.9 163 77.3
Prupe.5G030400 Prunus persica HOM05D006601 ORTHO05D008281 7.8e-68 261.2 173 74.0
CiPaw.13G041000 Carya illinoinensis HOM05D006601 ORTHO05D008281 1.7e-67 260.0 202 71.8
Carub.0005s1858 Capsella rubella HOM05D006601 ORTHO05D008281 3.9e-67 258.8 151 82.8
Thhalv10010678m.g Eutrema salsugineum HOM05D006601 ORTHO05D008281 3.9e-67 258.8 151 82.1
C08p27460 Brassica napus HOM05D006601 ORTHO05D008281 5.0e-67 258.5 184 70.7
BolC8t50363H Brassica oleracea HOM05D006601 ORTHO05D008281 5.0e-67 258.5 184 70.7
CARHR161980 Cardamine hirsuta HOM05D006601 ORTHO05D008281 1.1e-66 257.3 159 79.2
AT3G52220 Arabidopsis thaliana HOM05D006601 ORTHO05D008281 1.5e-66 256.9 151 82.1
Cc02_g09570 Coffea canephora HOM05D006601 ORTHO05D008281 1.5e-66 256.9 208 71.2
Phvul.002G091600 Phaseolus vulgaris HOM05D006601 ORTHO05D008281 1.5e-66 256.9 208 63.0
Sp5g10040 Schrenkiella parvula HOM05D006601 ORTHO05D008281 1.5e-66 256.9 151 80.8
AL5G32810 Arabidopsis lyrata HOM05D006601 ORTHO05D008281 1.9e-66 256.5 159 79.2
CSS0000414 Camellia sinensis var. sinensis HOM05D006601 ORTHO05D008281 1.9e-66 256.5 171 74.3
Psat2g116120 Pisum sativum HOM05D006601 ORTHO05D008281 1.9e-66 256.5 172 73.3
PGR044G2546 Punica granatum HOM05D006601 ORTHO05D008281 1.9e-66 256.5 173 72.8
QL04p046797 Quercus lobata HOM05D006601 ORTHO05D008281 1.9e-66 256.5 203 72.9
QL04p047245 Quercus lobata HOM05D006601 ORTHO05D008281 1.9e-66 256.5 203 72.9
CAN.G1417.5 Capsicum annuum HOM05D006601 ORTHO05D008281 2.5e-66 256.1 175 72.0
Glyma.02G110700 Glycine max HOM05D006601 ORTHO05D008281 3.3e-66 255.8 173 73.4
Hund22273 Selenicereus undatus HOM05D006601 ORTHO05D008281 3.3e-66 255.8 161 77.0
Oeu030223.2 Olea europaea HOM05D006601 ORTHO05D008281 4.3e-66 255.4 202 66.3
Lalb_Chr10g0098441 Lupinus albus HOM05D006601 ORTHO05D008281 7.3e-66 254.6 172 72.1
Solyc11g006760.3 Solanum lycopersicum HOM05D006601 ORTHO05D008281 7.3e-66 254.6 176 71.6
Glyma.01G052400 Glycine max HOM05D006601 ORTHO05D008281 9.5e-66 254.2 172 72.1
Sopen11g002690 Solanum pennellii HOM05D006601 ORTHO05D008281 9.5e-66 254.2 176 71.6
vmacro10311 Vaccinium macrocarpon HOM05D006601 ORTHO05D008281 9.5e-66 254.2 192 66.7
Oeu026608.1 Olea europaea HOM05D006601 ORTHO05D008281 1.2e-65 253.8 172 73.3
Dinv12840 Davidia involucrata HOM05D006601 ORTHO05D008281 1.6e-65 253.4 171 74.3
MD06G1038200 Malus domestica HOM05D006601 ORTHO05D008281 2.8e-65 252.7 173 72.3
PSO339G2358 Papaver somniferum HOM05D006601 ORTHO05D008281 2.8e-65 252.7 201 68.2
Peaxi162Scf00125g00234 Petunia axillaris HOM05D006601 ORTHO05D008281 3.6e-65 252.3 202 67.8
Ciclev10016593m.g Citrus clementina HOM05D006601 ORTHO05D008281 4.7e-65 251.9 166 78.3
Nitab4.5_0009484g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 8.0e-65 251.1 177 71.2
PGSC0003DMG400023966 Solanum tuberosum HOM05D006601 ORTHO05D008281 8.0e-65 251.1 166 74.1
RcHm_v2.0_Chr6g0269151 Rosa chinensis HOM05D006601 ORTHO05D008281 1.4e-64 250.4 172 72.1
HanXRQChr11g0321661 Helianthus annuus HOM05D006601 ORTHO05D008281 1.8e-64 250.0 175 70.9
Lj2g0012177 Lotus japonicus HOM05D006601 ORTHO05D008281 4.0e-64 248.8 160 75.6
Aa31LG10G7330 Aethionema arabicum HOM05D006601 ORTHO05D008281 5.2e-64 248.4 189 67.7
Lsat_1_v5_gn_0_8161 Lactuca sativa HOM05D006601 ORTHO05D008281 5.2e-64 248.4 176 69.9
ECA232G0968 Erigeron canadensis HOM05D006601 ORTHO05D008281 1.2e-63 247.3 155 77.4
ClCG08G008320 Citrullus lanatus HOM05D006601 ORTHO05D008281 1.5e-63 246.9 162 77.2
DCAR_006335 Daucus carota HOM05D006601 ORTHO05D008281 1.5e-63 246.9 145 80.7
MBI17_g13115_MAGBIO Magnolia biondii HOM05D006601 ORTHO05D008281 2.0e-63 246.5 172 72.7
CsaV3_6G004290 Cucumis sativus L. HOM05D006601 ORTHO05D008281 2.6e-63 246.1 173 72.8
Ca_04833_v3 Cicer arietinum L. HOM05D006601 ORTHO05D008281 4.4e-63 245.4 175 70.3
Eucgr.J00269 Eucalyptus grandis HOM05D006601 ORTHO05D008281 4.4e-63 245.4 172 71.5
MSTRG.9054 Avicennia marina HOM05D006601 ORTHO05D008281 7.5e-63 244.6 172 71.5
MELO3C019900.2 Cucumis melo HOM05D006601 ORTHO05D008281 7.5e-63 244.6 165 75.2
FvH4_2g10940 Fragaria vesca HOM05D006601 ORTHO05D008281 9.8e-63 244.2 175 71.4
FAN24G1745 Fragaria x ananassa HOM05D006601 ORTHO05D008281 9.8e-63 244.2 175 71.4
Medtr5g042160 Medicago truncatula HOM05D006601 ORTHO05D008281 9.8e-63 244.2 174 69.5
RcHm_v2.0_Chr2g0160691 Rosa chinensis HOM05D006601 ORTHO05D008281 2.9e-62 242.7 173 70.5
arahy.Tifrunner.gnm1.ann1.VBS9AQ Arachis hypogaea HOM05D006601 ORTHO05D008281 4.9e-62 241.9 173 69.9
SGA_v2.0_scaffold62G21313 Striga asiatica HOM05D006601 ORTHO05D008281 4.9e-62 241.9 173 74.0
Sed0022988 Sechium edule HOM05D006601 ORTHO05D008281 1.1e-61 240.7 173 72.8
Os08g0558700 Oryza sativa ssp. japonica HOM05D006601 ORTHO05D008281 7.0e-61 238.0 200 72.0
SalBow3G0796 Salvia bowleyana HOM05D006601 ORTHO05D008281 9.2e-61 237.7 179 66.5
AUR62041519 Chenopodium quinoa HOM05D006601 ORTHO05D008281 1.6e-60 236.9 163 73.6
TPR.G31604 Trifolium pratense HOM05D006601 ORTHO05D008281 3.5e-60 235.7 134 83.6
Aqoxy2G01120 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 4.6e-60 235.3 176 68.2
Migut.F00866 Erythranthe guttata HOM05D006601 ORTHO05D008281 2.3e-59 233.0 172 68.0
HPP92_000012 Vanilla planifolia HOM05D006601 ORTHO05D008281 6.6e-59 231.5 172 67.4
unitig_899.g14469 Utricularia gibba HOM05D006601 ORTHO05D008281 8.6e-59 231.1 166 73.5
SEGI_26123 Sequoiadendron giganteum HOM05D006601 ORTHO05D008281 4.3e-58 228.8 163 71.2
Lj3A925T73 Lonicera japonica HOM05D006601 ORTHO05D008281 1.2e-57 227.3 152 74.3
FAN20G1775 Fragaria x ananassa HOM05D006601 ORTHO05D008281 6.2e-57 224.9 130 83.8
Nn6g34864 Nelumbo nucifera HOM05D006601 ORTHO05D008281 6.2e-57 224.9 136 80.9
TWI63G1188 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 6.2e-57 224.9 158 71.5
FAN15G0841 Fragaria x ananassa HOM05D006601 ORTHO05D008281 2.6e-55 219.5 176 67.0
arahy.Tifrunner.gnm1.ann1.0XG3CD Arachis hypogaea HOM05D006601 ORTHO05D008281 4.6e-52 208.8 209 55.0
Pp3c1_22490 Physcomitrium patens HOM05D006601 ORTHO05D008281 2.4e-45 186.4 178 56.7
SMO367G0990 Selaginella moellendorffii HOM05D006601 ORTHO05D008281 2.4e-45 186.4 180 57.2
ATR0776G086 Amborella trichopoda HOM05D006601 ORTHO05D008281 5.4e-45 185.3 157 62.4
Mapoly0044s0087 Marchantia polymorpha HOM05D006601 ORTHO05D008281 2.1e-44 183.3 136 63.2
CDE04G0959 Ceratophyllum demersum HOM05D006601 ORTHO05D008281 5.6e-42 175.3 177 54.8
BcaC07g39592 Brassica carinata HOM05D006601 ORTHO05D008281 3.6e-41 172.6 190 53.7
Haze_03300 Corylus avellana HOM05D006601 ORTHO05D008281 6.9e-40 168.3 127 67.7
Actinidia31106 Actinidia chinensis HOM05D006601 ORTHO05D008281 1.3e-38 164.1 91 83.5
Sc09g0005300 Simmondsia chinensis HOM05D006601 ORTHO05D008281 2.2e-38 163.3 128 65.6
Nitab4.5_0002586g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 4.2e-37 159.1 137 62.0
AUR62042084 Chenopodium quinoa HOM05D006601 ORTHO05D008281 9.3e-37 157.9 173 53.8
PSO692G0001 Papaver somniferum HOM05D006601 ORTHO05D008281 9.3e-29 131.3 139 55.4
PSO801G0555 Papaver somniferum HOM05D006601 ORTHO05D008281 9.3e-29 131.3 139 55.4
MCO05G050 Micromonas commoda HOM05D006601 ORTHO05D008281 4.6e-28 129.0 131 53.4
Cre18.g749347 Chlamydomonas reinhardtii HOM05D006601 ORTHO05D008281 2.3e-27 126.7 174 44.3
Ah.06g186680 Amaranthus hybridus HOM05D006601 ORTHO05D008281 3.2e-21 106.3 65 80.0
Aqoxy2G01116 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 7.9e-20 101.7 101 57.4
CiPaw.14G033700 Carya illinoinensis HOM05D006601 ORTHO05D008281 5.1e-19 99.0 80 67.5
Zm00001eb039400 Zea mays HOM05D006601 ORTHO05D008281 1.1e-18 97.8 94 57.4
Cfa024623 Carpinus fangiana HOM05D006601 ORTHO05D008281 1.9e-18 97.1 124 44.4
Lsat_1_v5_gn_4_8660 Lactuca sativa HOM05D006601 ORTHO05D008281 6.5e-14 82.0 55 70.9
BcaC02g09271 Brassica carinata HOM05D006601 ORTHO05D008281 1.1e-10 71.2 100 49.0
Hma1.2p1_1491F.1_g286720 Hydrangea macrophylla HOM05D006601 ORTHO05D008281 1.1e-10 71.2 37 91.9
EL10Ac7g17292 Beta vulgaris HOM05D006601 ORTHO05D008281 3.7e-09 66.2 31 83.9
AagrBONN_evm.TU.Sc2ySwM_228.2727 Anthoceros agrestis HOM05D006601 ORTHO05D008281 3.1e-08 63.2 81 46.9
Aqoxy2G01117 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 3.1e-08 63.2 31 80.6
EL10Ac8g19171 Beta vulgaris HOM05D006601 ORTHO05D008281 8.5e-06 55.1 25 84.0


User provided reference genes

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