Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 2.3e-122 442.2 213 100.0
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 3.1e-111 405.2 213 91.5
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 8.9e-111 403.7 213 88.7
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 3.4e-110 401.7 213 89.2
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 3.9e-106 388.3 212 84.0
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 1.5e-105 386.3 213 85.9
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 2.5e-105 385.6 213 85.4
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 2.5e-105 385.6 213 84.5
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 3.3e-105 385.2 213 84.5
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 6.2e-104 380.9 213 82.6
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 6.2e-104 380.9 213 83.6
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 5.3e-103 377.9 210 83.8
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 9.0e-103 377.1 213 83.1
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 1.2e-102 376.7 209 84.2
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 1.5e-102 376.3 213 83.1
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 2.6e-102 375.6 208 84.1
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 3.4e-102 375.2 213 82.6
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 7.6e-102 374.0 209 83.7
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 2.2e-101 372.5 213 83.6
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 3.8e-101 371.7 209 83.3
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 3.8e-101 371.7 208 83.7
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 1.1e-100 370.2 209 82.3
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.1e-100 370.2 213 82.2
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 2.4e-100 369.0 209 82.8
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 2.4e-100 369.0 209 82.8
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 3.2e-100 368.6 213 82.6
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 4.2e-100 368.2 209 81.8
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 4.2e-100 368.2 213 81.7
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 4.2e-100 368.2 213 81.2
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 5.4e-100 367.9 213 82.2
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 7.1e-100 367.5 211 82.0
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 1.6e-99 366.3 213 79.8
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 1.6e-99 366.3 213 81.7
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.6e-99 366.3 213 81.2
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 1.6e-99 366.3 208 82.7
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 2.7e-99 365.5 213 79.8
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 6.0e-99 364.4 211 80.1
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 6.0e-99 364.4 213 82.2
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 6.0e-99 364.4 213 82.2
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 7.9e-99 364.0 213 79.3
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 1.3e-98 363.2 209 80.9
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 1.3e-98 363.2 209 80.9
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 1.7e-98 362.8 213 82.2
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 3.0e-98 362.1 213 80.8
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 3.0e-98 362.1 214 80.4
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 3.9e-98 361.7 213 78.9
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 6.6e-98 360.9 204 83.3
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 1.5e-97 359.8 213 79.3
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 1.9e-97 359.4 209 80.9
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 3.3e-97 358.6 210 79.0
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 3.3e-97 358.6 209 78.0
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 3.3e-97 358.6 213 78.4
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 4.3e-97 358.2 213 79.8
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 5.6e-97 357.8 208 81.2
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 1.3e-96 356.7 234 74.4
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 2.8e-96 355.5 210 78.1
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 3.6e-96 355.1 208 79.8
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 6.2e-96 354.4 198 83.3
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 1.4e-95 353.2 213 77.9
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 2.4e-95 352.4 211 77.7
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 2.4e-95 352.4 213 75.6
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 4.0e-95 351.7 208 77.4
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 5.3e-95 351.3 207 78.3
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 5.3e-95 351.3 213 76.1
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 1.2e-94 350.1 206 76.7
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 1.2e-94 350.1 193 86.0
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 1.2e-94 350.1 211 78.7
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 1.5e-94 349.7 206 76.7
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 2.0e-94 349.4 206 76.7
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 2.0e-94 349.4 208 77.4
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 2.6e-94 349.0 208 76.0
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 2.6e-94 349.0 208 78.4
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 3.4e-94 348.6 206 77.2
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 5.8e-94 347.8 207 75.8
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 7.6e-94 347.4 204 78.4
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 9.9e-94 347.1 208 77.4
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 1.3e-93 346.7 208 76.9
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 1.7e-93 346.3 206 75.7
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 2.9e-93 345.5 204 77.9
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 8.4e-93 344.0 208 75.5
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 8.4e-93 344.0 204 77.5
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 8.4e-93 344.0 210 74.8
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 1.1e-92 343.6 213 76.5
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 1.9e-92 342.8 204 77.0
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 1.9e-92 342.8 208 76.9
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 2.4e-92 342.4 204 77.0
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 2.4e-92 342.4 206 75.2
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 2.4e-92 342.4 209 74.6
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 3.2e-92 342.0 213 74.2
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 5.4e-92 341.3 208 78.4
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 9.3e-92 340.5 233 70.8
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 1.2e-91 340.1 213 73.7
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 1.6e-91 339.7 208 76.0
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 3.5e-91 338.6 213 76.1
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 3.5e-91 338.6 217 77.0
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 4.6e-91 338.2 253 67.2
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 4.6e-91 338.2 209 75.1
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 1.0e-90 337.0 217 73.7
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.3e-90 336.7 213 75.6
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 2.3e-90 335.9 208 75.0
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 3.9e-90 335.1 213 75.1
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 3.9e-90 335.1 209 74.2
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.1e-89 333.6 213 74.6
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 3.3e-89 332.0 209 73.7
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 4.3e-89 331.6 204 77.0
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 9.6e-89 330.5 211 72.5
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 1.1e-87 327.0 208 72.1
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 1.4e-87 326.6 209 72.2
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 3.1e-87 325.5 207 72.0
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 6.9e-87 324.3 207 72.0
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 2.6e-86 322.4 205 71.7
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 2.6e-86 322.4 295 57.3
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 4.5e-86 321.6 204 72.5
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 3.5e-83 312.0 203 70.4
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 7.9e-83 310.8 212 71.2
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 1.5e-81 306.6 178 82.6
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 2.1e-80 302.8 214 70.6
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 1.1e-79 300.4 166 83.7
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 3.2e-76 288.9 169 81.1
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 4.5e-70 268.5 429 40.8
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 3.2e-68 262.3 145 82.1
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 4.2e-68 261.9 145 82.1
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 1.8e-66 256.5 145 77.2
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 3.9e-66 255.4 208 63.0
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 9.7e-65 250.8 171 69.6
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 3.5e-54 215.7 140 72.1
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 1.5e-52 210.3 113 84.1
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 1.4e-50 203.8 209 48.8
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 3.1e-47 192.6 109 85.3
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 3.5e-46 189.1 125 71.2
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 3.5e-46 189.1 196 49.0
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 8.8e-42 174.5 195 45.1
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 1.3e-37 160.6 92 78.3
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 1.7e-37 160.2 143 53.8
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 9.4e-36 154.5 97 74.2
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 1.7e-32 143.7 74 86.5
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 1.4e-31 140.6 95 70.5
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 1.4e-31 140.6 89 76.4
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 7.0e-23 111.7 72 73.6
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 2.7e-22 109.8 69 73.9
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 7.3e-20 101.7 74 66.2
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 2.0e-17 93.6 66 68.2
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 2.9e-16 89.7 60 70.0
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 2.1e-11 73.6 40 85.0
Migut.F00867 Erythranthe guttata HOM05D012249 ORTHO05D014194 7.5e-09 65.1 35 80.0
GSVIVG01037606001 Vitis vinifera HOM05D005215 ORTHO05D014194 9.8e-09 64.7 35 80.0
Peaxi162Scf00959g00417 Petunia axillaris HOM05D005215 ORTHO05D306904 4.9e-08 62.4 60 58.3
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 5.4e-07 58.9 32 81.2


User provided reference genes

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