Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.0e-54 216.5 107 100.0
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 1.9e-48 195.7 107 89.7
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 1.1e-37 159.8 107 68.2
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 2.5e-37 158.7 106 69.8
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 1.8e-35 152.5 108 69.4
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 3.1e-35 151.8 107 63.6
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 6.9e-35 150.6 108 65.7
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 9.0e-35 150.2 107 62.6
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 9.0e-35 150.2 107 62.6
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 9.0e-35 150.2 107 62.6
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 2.0e-34 149.1 107 61.7
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 4.4e-34 147.9 110 62.7
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 4.4e-34 147.9 107 62.6
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 5.8e-34 147.5 107 64.5
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 5.8e-34 147.5 108 64.8
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 9.9e-34 146.7 108 64.8
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 9.9e-34 146.7 107 60.7
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 9.9e-34 146.7 108 63.9
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 9.9e-34 146.7 107 59.8
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 1.3e-33 146.4 107 60.7
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 2.9e-33 145.2 107 63.6
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 2.9e-33 145.2 107 62.6
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 4.9e-33 144.4 108 64.8
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 4.9e-33 144.4 108 64.8
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 1.4e-32 142.9 108 62.0
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 2.4e-32 142.1 108 62.0
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 2.4e-32 142.1 107 57.0
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 2.4e-32 142.1 107 61.7
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 3.2e-32 141.7 108 60.2
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 3.2e-32 141.7 107 60.7
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 3.2e-32 141.7 103 64.1
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 4.2e-32 141.4 107 63.6
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 4.2e-32 141.4 107 60.7
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 4.2e-32 141.4 107 61.7
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 1.2e-31 139.8 107 58.9
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 1.6e-31 139.4 107 60.7
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 1.6e-31 139.4 108 63.0
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 2.1e-31 139.0 108 62.0
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 2.7e-31 138.7 107 57.9
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 2.7e-31 138.7 107 59.8
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 2.7e-31 138.7 107 58.9
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 3.5e-31 138.3 107 58.9
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 4.6e-31 137.9 107 59.8
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 4.6e-31 137.9 108 63.9
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 7.8e-31 137.1 107 59.8
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 7.8e-31 137.1 108 60.2
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 7.8e-31 137.1 107 60.7
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 1.0e-30 136.7 108 62.0
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 1.3e-30 136.3 107 57.0
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 1.7e-30 136.0 107 58.9
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.7e-30 136.0 108 59.3
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 2.3e-30 135.6 107 57.9
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 2.3e-30 135.6 108 57.4
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 3.0e-30 135.2 108 59.3
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 3.0e-30 135.2 108 58.3
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 3.0e-30 135.2 108 62.0
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 3.9e-30 134.8 108 59.3
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 5.1e-30 134.4 107 57.0
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 5.1e-30 134.4 107 57.0
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 5.1e-30 134.4 107 57.9
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 5.1e-30 134.4 107 57.0
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 6.6e-30 134.0 108 63.0
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 6.6e-30 134.0 108 59.3
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 6.6e-30 134.0 108 59.3
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 8.7e-30 133.7 107 54.2
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 8.7e-30 133.7 107 58.9
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 8.7e-30 133.7 108 59.3
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 1.1e-29 133.3 107 57.9
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 1.1e-29 133.3 107 57.9
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 1.1e-29 133.3 107 55.1
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.1e-29 133.3 108 59.3
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 1.5e-29 132.9 108 62.0
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 1.5e-29 132.9 107 58.9
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 1.5e-29 132.9 107 57.9
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 1.5e-29 132.9 108 59.3
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 1.9e-29 132.5 107 59.8
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 1.9e-29 132.5 108 59.3
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 2.5e-29 132.1 107 57.9
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 2.5e-29 132.1 107 57.9
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 2.5e-29 132.1 107 57.0
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 2.5e-29 132.1 108 58.3
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 2.5e-29 132.1 107 57.0
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 4.3e-29 131.3 108 58.3
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 4.3e-29 131.3 107 57.9
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 4.3e-29 131.3 108 58.3
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 5.6e-29 131.0 108 55.6
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 5.6e-29 131.0 107 55.1
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 5.6e-29 131.0 107 55.1
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 5.6e-29 131.0 107 55.1
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 7.3e-29 130.6 108 57.4
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 9.6e-29 130.2 108 58.3
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 9.6e-29 130.2 108 58.3
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 1.6e-28 129.4 109 56.0
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 1.6e-28 129.4 107 54.2
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 2.1e-28 129.0 107 57.0
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 2.1e-28 129.0 107 57.0
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 2.1e-28 129.0 107 57.0
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 2.8e-28 128.6 107 55.1
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 2.8e-28 128.6 107 55.1
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 6.2e-28 127.5 107 56.1
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 8.1e-28 127.1 108 55.6
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 8.1e-28 127.1 109 56.9
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 1.1e-27 126.7 107 57.0
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 1.4e-27 126.3 107 56.1
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 1.8e-27 125.9 106 53.8
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 3.1e-27 125.2 107 54.2
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 6.9e-27 124.0 108 58.3
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 1.5e-26 122.9 108 53.7
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 1.5e-26 122.9 103 51.5
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 1.7e-25 119.4 85 62.4
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 3.8e-25 118.2 107 53.3
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 4.9e-25 117.9 104 52.9
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 6.4e-25 117.5 111 53.2
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 1.1e-24 116.7 95 56.8
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 1.1e-24 116.7 99 56.6
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.4e-24 116.3 87 58.6
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.4e-24 116.3 87 57.5
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 5.4e-24 114.4 108 50.0
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 2.1e-23 112.5 107 47.7
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 2.1e-23 112.5 87 57.5
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 2.7e-23 112.1 86 60.5
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 4.6e-23 111.3 90 56.7
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 6.0e-23 110.9 87 57.5
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 1.0e-22 110.2 85 56.5
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 1.3e-22 109.8 85 58.8
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 1.8e-22 109.4 89 57.3
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 3.9e-22 108.2 83 57.8
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 3.9e-22 108.2 89 57.3
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 5.1e-22 107.8 107 47.7
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.1e-21 106.7 83 57.8
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 1.1e-21 106.7 94 52.1
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 2.5e-21 105.5 91 50.5
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 4.3e-21 104.8 107 46.7
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.6e-20 102.8 107 50.5
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 2.1e-20 102.4 93 49.5
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 2.8e-20 102.1 86 61.6
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 4.8e-20 101.3 86 53.5
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 1.1e-19 100.1 87 54.0
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 1.8e-19 99.4 85 55.3
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 1.8e-19 99.4 85 55.3
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 6.9e-19 97.4 66 65.2
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 1.7e-17 92.8 93 51.6
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 2.9e-17 92.0 95 49.5
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 2.7e-15 85.5 108 39.8
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 6.0e-15 84.3 106 37.7
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 1.8e-14 82.8 109 37.6
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 3.0e-14 82.0 81 48.1
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 5.1e-14 81.3 89 42.7
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 1.5e-13 79.7 109 36.7
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 1.5e-13 79.7 65 55.4
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 9.6e-13 77.0 110 40.9
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 1.3e-12 76.6 87 49.4
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 4.0e-11 71.6 111 37.8
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 3.4e-10 68.6 65 50.8
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 1.7e-09 66.2 58 53.4
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 1.7e-09 66.2 109 33.9
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 9.3e-08 60.5 76 39.5


User provided reference genes

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