Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G238500 Populus trichocarpa HOM05D007318 ORTHO05D009289 7.2e-135 483.8 227 100.0
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 4.4e-124 448.0 224 92.9
TWI63G0749 Tripterygium wilfordii HOM05D007318 ORTHO05D009289 2.3e-104 382.5 224 74.1
Atru.chr12.1022 Acer truncatum HOM05D007318 ORTHO05D009289 5.1e-104 381.3 224 74.6
Ciclev10016201m.g Citrus clementina HOM05D007318 ORTHO05D009289 8.6e-104 380.6 224 72.8
Manes.03G085100 Manihot esculenta HOM05D007318 ORTHO05D009289 2.1e-102 375.9 224 72.8
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 1.8e-101 372.9 224 73.2
Dinv09616 Davidia involucrata HOM05D007318 ORTHO05D009289 2.9e-99 365.5 224 73.2
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 8.4e-99 364.0 224 72.3
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 6.6e-96 354.4 224 71.0
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 3.3e-95 352.1 224 71.0
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 4.3e-95 351.7 224 70.5
MD02G1257000 Malus domestica HOM05D007318 ORTHO05D009289 4.8e-94 348.2 224 68.8
Duzib151G0977 Durio zibethinus HOM05D007318 ORTHO05D009289 5.3e-93 344.7 224 69.2
Actinidia18618 Actinidia chinensis HOM05D007318 ORTHO05D009289 1.5e-92 343.2 219 69.4
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 1.5e-92 343.2 221 71.0
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 4.4e-92 341.7 224 67.9
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 5.8e-92 341.3 224 67.0
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 1.3e-91 340.1 224 69.2
Nn7g37225 Nelumbo nucifera HOM05D007318 ORTHO05D009289 1.1e-90 337.0 224 66.1
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 1.4e-90 336.7 221 70.1
Rhsim03G0098000 Rhododendron simsii HOM05D007318 ORTHO05D009289 1.9e-90 336.3 224 65.6
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 2.4e-90 335.9 221 69.2
ECA238G4459 Erigeron canadensis HOM05D007318 ORTHO05D009289 3.2e-90 335.5 224 67.4
Solyc11g006930.3 Solanum lycopersicum HOM05D007318 ORTHO05D009289 7.1e-90 334.3 224 70.1
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 1.6e-89 333.2 225 65.3
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 2.1e-89 332.8 224 68.3
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 2.7e-89 332.4 228 68.4
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 4.6e-89 331.6 225 66.7
MBI13_g32993_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 4.6e-89 331.6 227 66.1
RcHm_v2.0_Chr1g0332361 Rosa chinensis HOM05D007318 ORTHO05D009289 6.0e-89 331.3 220 65.9
Hund22276 Selenicereus undatus HOM05D007318 ORTHO05D009289 7.8e-89 330.9 224 65.6
Lsat_1_v5_gn_2_104460 Lactuca sativa HOM05D007318 ORTHO05D009289 1.0e-88 330.5 230 65.7
CSS0042589 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 1.3e-88 330.1 227 64.3
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 2.3e-88 329.3 220 66.4
Peaxi162Scf00173g00322 Petunia axillaris HOM05D007318 ORTHO05D009289 3.0e-88 328.9 220 69.1
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 3.9e-88 328.6 224 65.6
CSS0001089 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 6.6e-88 327.8 227 63.4
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 1.9e-87 326.2 224 66.5
HanXRQChr07g0194021 Helianthus annuus HOM05D007318 ORTHO05D009289 4.3e-87 325.1 224 65.6
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 5.6e-87 324.7 224 64.7
Oeu026589.2 Olea europaea HOM05D007318 ORTHO05D009289 2.4e-85 319.3 223 63.7
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 2.4e-85 319.3 224 63.8
FAN06G3353 Fragaria x ananassa HOM05D007318 ORTHO05D009289 5.3e-85 318.2 220 62.7
CANSAT56G0802 Cannabis sativa HOM05D007318 ORTHO05D009289 6.9e-85 317.8 244 61.9
DCAR_018980 Daucus carota HOM05D007318 ORTHO05D009289 6.9e-85 317.8 224 63.4
PSO384G0062 Papaver somniferum HOM05D007318 ORTHO05D009289 9.0e-85 317.4 222 62.2
FAN01G1304 Fragaria x ananassa HOM05D007318 ORTHO05D009289 1.2e-84 317.0 220 62.7
SalBow6G3105 Salvia bowleyana HOM05D007318 ORTHO05D009289 3.4e-84 315.5 224 64.3
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 4.5e-84 315.1 224 64.3
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 4.5e-84 315.1 224 64.3
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 4.5e-84 315.1 224 64.3
FvH4_7g05530 Fragaria vesca HOM05D007318 ORTHO05D009289 5.8e-84 314.7 220 62.3
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 9.3e-82 307.4 222 61.7
Cc02_g09660 Coffea canephora HOM05D007318 ORTHO05D009289 1.6e-81 306.6 224 62.5
Prupe.2G075500 Prunus persica HOM05D007318 ORTHO05D009289 2.3e-80 302.8 182 73.6
SGA_v2.0_scaffold13G06456 Striga asiatica HOM05D007318 ORTHO05D009289 5.1e-80 301.6 224 60.7
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 1.9e-79 299.7 235 60.0
EL10Ac4g08684 Beta vulgaris HOM05D007318 ORTHO05D009289 4.3e-79 298.5 224 59.8
MELO3C012351.2 Cucumis melo HOM05D007318 ORTHO05D009289 9.6e-79 297.4 237 60.8
TPR.G10614 Trifolium pratense HOM05D007318 ORTHO05D009289 2.1e-78 296.2 230 60.4
MBI13_g44214_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 4.8e-78 295.0 224 60.3
Medtr1g050425 Medicago truncatula HOM05D007318 ORTHO05D009289 1.2e-76 290.4 255 54.1
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 1.2e-76 290.4 215 58.1
Zm00001eb196200 Zea mays HOM05D007318 ORTHO05D009289 2.0e-76 289.7 220 57.7
Os12g0133400 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 3.2e-74 282.3 215 57.2
unitig_0.g1560 Utricularia gibba HOM05D007318 ORTHO05D009289 5.5e-74 281.6 220 55.9
TAR636G1683 Trochodendron aralioides HOM05D007318 ORTHO05D009289 1.2e-73 280.4 176 75.0
Psat2g020440 Pisum sativum HOM05D007318 ORTHO05D009289 1.6e-73 280.0 266 51.5
Aqoxy1G02117 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 2.1e-73 279.6 224 56.2
Lj2A32G32 Lonicera japonica HOM05D007318 ORTHO05D009289 7.9e-73 277.7 224 56.7
Cpa.g.sc5.264 Carica papaya HOM05D007318 ORTHO05D009289 5.1e-72 275.0 179 67.0
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 6.2e-70 268.1 190 63.7
ClCG05G018410 Citrullus lanatus HOM05D007318 ORTHO05D009289 1.1e-69 267.3 224 58.0
HPP92_018209 Vanilla planifolia HOM05D007318 ORTHO05D009289 2.6e-68 262.7 224 52.2
Aqoxy1G02095 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 7.6e-68 261.2 236 51.3
Thecc.03G070600 Theobroma cacao HOM05D007318 ORTHO05D009289 1.8e-64 250.0 164 69.5
Glyma.02G164100 Glycine max HOM05D007318 ORTHO05D009289 9.7e-63 244.2 179 62.6
ATR1096G030 Amborella trichopoda HOM05D007318 ORTHO05D009289 2.2e-62 243.0 183 57.9
AagrBONN_evm.TU.Sc2ySwM_368.1913 Anthoceros agrestis HOM05D007318 ORTHO05D009289 1.4e-58 230.3 227 47.1
MSTRG.421 Avicennia marina HOM05D007318 ORTHO05D009289 1.2e-57 227.3 170 60.6
Cfa011269 Carpinus fangiana HOM05D007318 ORTHO05D009289 1.6e-57 226.9 143 68.5
Mapoly0020s0170 Marchantia polymorpha HOM05D007318 ORTHO05D009289 1.5e-52 210.3 228 45.2
AUR62043602 Chenopodium quinoa HOM05D007318 ORTHO05D009289 8.5e-51 204.5 281 39.5
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 1.4e-48 197.2 222 45.5
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 1.8e-48 196.8 247 41.7
ClCG00G005260 Citrullus lanatus HOM05D007318 ORTHO05D009289 1.4e-45 187.2 136 61.0
AUR62042079 Chenopodium quinoa HOM05D007318 ORTHO05D009289 1.0e-43 181.0 138 60.1
Psat6g095000 Pisum sativum HOM05D007318 ORTHO05D009289 1.0e-43 181.0 226 42.9
PRCOL_00002097 Prasinoderma coloniale HOM05D007318 ORTHO05D009289 1.2e-41 174.1 233 39.9
MBI13_g43865_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 3.6e-41 172.6 110 67.3
Lsat_1_v5_gn_5_177140 Lactuca sativa HOM05D007318 ORTHO05D009289 1.0e-40 171.0 148 57.4
SEGI_17929 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 1.3e-38 164.1 130 60.8
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 5.3e-37 158.7 99 67.7
MCO07G233 Micromonas commoda HOM05D007318 ORTHO05D009289 1.8e-32 143.7 258 35.3
PGSC0003DMG400023973 Solanum tuberosum HOM05D007318 ORTHO05D009289 9.8e-31 137.9 83 77.1
Dinv09612 Davidia involucrata HOM05D007318 ORTHO05D009289 1.3e-27 127.5 82 70.7
Cre07.g323750 Chlamydomonas reinhardtii HOM05D007318 ORTHO05D009289 7.7e-20 101.7 234 29.9
Glyma.20G074100 Glycine max HOM05D007318 ORTHO05D009289 2.0e-15 87.0 84 50.0
Lj6g0000477 Lotus japonicus HOM05D007318 ORTHO05D009289 3.5e-12 76.3 106 37.7
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 3.0e-11 73.2 236 26.7
MBI13_g44208_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 3.0e-11 73.2 38 71.1
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 2.5e-10 70.1 240 25.8
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 5.6e-10 68.9 220 26.4
ClCG05G021770 Citrullus lanatus HOM05D007318 ORTHO05D009289 9.5e-10 68.2 39 71.8
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 1.6e-09 67.4 247 24.7
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 1.8e-08 63.9 237 25.7
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 6.8e-08 62.0 235 23.8
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 6.8e-08 62.0 235 24.7
SEGI_12071 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 6.8e-08 62.0 63 41.3
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 8.9e-08 61.6 209 26.3
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 8.9e-08 61.6 184 26.1
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 1.5e-07 60.8 243 23.5
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 2.0e-07 60.5 243 24.7
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 2.6e-07 60.1 197 24.9
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 2.6e-07 60.1 220 25.9
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 3.4e-07 59.7 197 24.9
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 4.4e-07 59.3 181 26.0
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 5.8e-07 58.9 247 23.9
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 7.5e-07 58.5 239 23.0
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 7.5e-07 58.5 245 24.5
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 9.8e-07 58.2 231 23.4
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 9.8e-07 58.2 223 26.5
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 1.3e-06 57.8 252 23.4
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.3e-06 57.8 244 25.0
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 1.3e-06 57.8 234 21.8
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 1.3e-06 57.8 224 25.0
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 1.7e-06 57.4 222 25.2
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 1.7e-06 57.4 245 24.1
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 2.2e-06 57.0 212 24.1
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 2.2e-06 57.0 238 21.8
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 2.2e-06 57.0 181 26.0
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 2.2e-06 57.0 190 24.7
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 2.2e-06 57.0 179 26.8
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.9e-06 56.6 244 24.6
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 2.9e-06 56.6 226 27.4
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 3.7e-06 56.2 215 23.3
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 3.7e-06 56.2 181 26.0
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 3.7e-06 56.2 151 27.8
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 3.7e-06 56.2 219 24.2
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 4.9e-06 55.8 245 24.1
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 4.9e-06 55.8 218 24.8
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 4.9e-06 55.8 223 26.5
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 6.4e-06 55.5 238 22.7
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 6.4e-06 55.5 238 22.7
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 6.4e-06 55.5 218 23.9
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 6.4e-06 55.5 244 23.4
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 8.3e-06 55.1 180 26.1


User provided reference genes

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