Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G234900 Populus trichocarpa HOM05D007680 ORTHO05D009702 2.6e-59 232.3 155 100.0
Sabra10G0182100 Salix brachista HOM05D007680 ORTHO05D009702 2.6e-43 179.1 139 89.9
Potri.008G025700 Populus trichocarpa HOM05D007680 ORTHO05D009702 3.5e-40 168.7 156 68.6
MELO3C012366.2 Cucumis melo HOM05D007680 ORTHO05D009702 1.3e-21 107.1 77 79.2
CSS0013494 Camellia sinensis var. sinensis HOM05D007680 ORTHO05D009702 1.6e-21 106.7 69 82.6
CsaV3_5G035650 Cucumis sativus L. HOM05D007680 ORTHO05D009702 2.1e-21 106.3 77 77.9
Prupe.2G086600 Prunus persica HOM05D007680 ORTHO05D009702 2.1e-21 106.3 77 77.9
ClCG05G021580 Citrullus lanatus HOM05D007680 ORTHO05D009702 2.8e-21 105.9 77 77.9
MD07G1087200 Malus domestica HOM05D007680 ORTHO05D009702 6.2e-21 104.8 77 77.9
Manes.05G202400 Manihot esculenta HOM05D007680 ORTHO05D009702 6.2e-21 104.8 158 51.3
Sed0005690 Sechium edule HOM05D007680 ORTHO05D009702 8.2e-21 104.4 77 75.3
Hma1.2p1_0026F.1_g016760 Hydrangea macrophylla HOM05D007680 ORTHO05D009702 1.1e-20 104.0 78 75.6
Actinidia31090 Actinidia chinensis HOM05D007680 ORTHO05D009702 2.4e-20 102.8 69 81.2
CiPaw.14G028600 Carya illinoinensis HOM05D007680 ORTHO05D009702 3.1e-20 102.4 77 77.9
HanXRQChr08g0217901 Helianthus annuus HOM05D007680 ORTHO05D009702 3.1e-20 102.4 69 78.3
Sopen11g003400 Solanum pennellii HOM05D007680 ORTHO05D009702 5.3e-20 101.7 69 81.2
PGSC0003DMG400027341 Solanum tuberosum HOM05D007680 ORTHO05D009702 5.3e-20 101.7 69 81.2
vmacro10277 Vaccinium macrocarpon HOM05D007680 ORTHO05D009702 6.9e-20 101.3 158 46.2
FAN03G2755 Fragaria x ananassa HOM05D007680 ORTHO05D009702 1.2e-19 100.5 66 84.8
FAN06G0858 Fragaria x ananassa HOM05D007680 ORTHO05D009702 1.2e-19 100.5 66 84.8
TAR636G0370 Trochodendron aralioides HOM05D007680 ORTHO05D009702 1.2e-19 100.5 78 74.4
Ciclev10032885m.g Citrus clementina HOM05D007680 ORTHO05D009702 1.5e-19 100.1 77 76.6
RcHm_v2.0_Chr1g0333251 Rosa chinensis HOM05D007680 ORTHO05D009702 2.0e-19 99.8 66 83.3
Haze_02610 Corylus avellana HOM05D007680 ORTHO05D009702 3.4e-19 99.0 69 79.7
Lj2C27T21 Lonicera japonica HOM05D007680 ORTHO05D009702 3.4e-19 99.0 69 76.8
Oeu060261.1 Olea europaea HOM05D007680 ORTHO05D009702 3.4e-19 99.0 75 69.3
Cfa011226 Carpinus fangiana HOM05D007680 ORTHO05D009702 4.5e-19 98.6 69 79.7
QL04p041248 Quercus lobata HOM05D007680 ORTHO05D009702 7.6e-19 97.8 68 77.9
SalBow6G1777 Salvia bowleyana HOM05D007680 ORTHO05D009702 7.6e-19 97.8 75 70.7
TAR636G3254 Trochodendron aralioides HOM05D007680 ORTHO05D009702 7.6e-19 97.8 78 73.1
Atru.chr12.970 Acer truncatum HOM05D007680 ORTHO05D009702 1.3e-18 97.1 77 72.7
Aqoxy2G01382 Aquilegia oxysepala HOM05D007680 ORTHO05D009702 1.3e-18 97.1 77 70.1
Cpa.g.sc128.47 Carica papaya HOM05D007680 ORTHO05D009702 2.9e-18 95.9 165 59.4
GSVIVG01034708001 Vitis vinifera HOM05D007680 ORTHO05D009702 2.9e-18 95.9 77 72.7
CDE08G1572 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 3.8e-18 95.5 77 71.4
TAR636G2061 Trochodendron aralioides HOM05D007680 ORTHO05D009702 5.0e-18 95.1 69 78.3
EL10Ac2g03857 Beta vulgaris HOM05D007680 ORTHO05D009702 8.4e-18 94.4 74 64.9
CDE02G0611 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 1.1e-17 94.0 76 71.1
Nn2g14013 Nelumbo nucifera HOM05D007680 ORTHO05D009702 1.4e-17 93.6 77 71.4
Migut.F01656 Erythranthe guttata HOM05D007680 ORTHO05D009702 1.9e-17 93.2 75 70.7
ATR0820G188 Amborella trichopoda HOM05D007680 ORTHO05D009702 2.5e-17 92.8 76 75.0
Thecc.10G109800 Theobroma cacao HOM05D007680 ORTHO05D009702 2.5e-17 92.8 163 44.2
Thecc.K0008600 Theobroma cacao HOM05D007680 ORTHO05D009702 2.5e-17 92.8 163 44.2
Duzib128G1419 Durio zibethinus HOM05D007680 ORTHO05D009702 5.5e-17 91.7 162 46.3
Sc20g0001300 Simmondsia chinensis HOM05D007680 ORTHO05D009702 5.5e-17 91.7 65 73.8
Ah.10g034230 Amaranthus hybridus HOM05D007680 ORTHO05D009702 7.1e-17 91.3 74 62.2
MBI17_g11658_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 7.1e-17 91.3 69 79.7
unitig_899.g15034 Utricularia gibba HOM05D007680 ORTHO05D009702 1.2e-16 90.5 69 72.5
Lalb_Chr01g0010321 Lupinus albus HOM05D007680 ORTHO05D009702 1.6e-16 90.1 72 72.2
TWI38G2267 Tripterygium wilfordii HOM05D007680 ORTHO05D009702 2.1e-16 89.7 77 72.7
Dinv30655 Davidia involucrata HOM05D007680 ORTHO05D009702 2.7e-16 89.4 146 45.2
Gorai.009G304500 Gossypium raimondii HOM05D007680 ORTHO05D009702 2.7e-16 89.4 172 43.0
Phvul.007G245300 Phaseolus vulgaris HOM05D007680 ORTHO05D009702 2.7e-16 89.4 141 46.8
Gohir.A05G288200 Gossypium hirsutum HOM05D007680 ORTHO05D009702 3.5e-16 89.0 162 43.8
Medtr1g050700 Medicago truncatula HOM05D007680 ORTHO05D009702 3.5e-16 89.0 88 63.6
THA.LOC104824894 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 3.5e-16 89.0 67 77.6
THA.LOC104824900 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 3.5e-16 89.0 67 77.6
Psat6g094320 Pisum sativum HOM05D007680 ORTHO05D009702 4.6e-16 88.6 74 71.6
Gohir.D05G289400 Gossypium hirsutum HOM05D007680 ORTHO05D009702 6.1e-16 88.2 162 43.2
COL.COLO4_33896 Corchorus olitorius HOM05D007680 ORTHO05D009702 7.9e-16 87.8 157 52.2
arahy.Tifrunner.gnm1.ann1.VK4BH4 Arachis hypogaea HOM05D007680 ORTHO05D009702 1.0e-15 87.4 68 70.6
Thhalv10026523m.g Eutrema salsugineum HOM05D007680 ORTHO05D009702 1.0e-15 87.4 67 76.1
Glyma.02G165700 Glycine max HOM05D007680 ORTHO05D009702 2.3e-15 86.3 73 68.5
PGR044G0006 Punica granatum HOM05D007680 ORTHO05D009702 3.0e-15 85.9 166 42.8
Sp7g35810 Schrenkiella parvula HOM05D007680 ORTHO05D009702 3.9e-15 85.5 67 74.6
TPR.G305 Trifolium pratense HOM05D007680 ORTHO05D009702 5.1e-15 85.1 67 76.1
TPR.G7612 Trifolium pratense HOM05D007680 ORTHO05D009702 5.1e-15 85.1 67 76.1
AL7G12370 Arabidopsis lyrata HOM05D007680 ORTHO05D009702 1.1e-14 84.0 67 74.6
AT4G40045 Arabidopsis thaliana HOM05D007680 ORTHO05D009702 1.1e-14 84.0 67 74.6
VMungo0720G1600 Vigna mungo HOM05D007680 ORTHO05D009702 1.1e-14 84.0 73 68.5
Carub.0007s0203 Capsella rubella HOM05D007680 ORTHO05D009702 5.7e-14 81.6 67 73.1
CARHR246610 Cardamine hirsuta HOM05D007680 ORTHO05D009702 7.4e-14 81.3 67 73.1
Lalb_Chr19g0129271 Lupinus albus HOM05D007680 ORTHO05D009702 9.7e-14 80.9 72 66.7
Hund17353 Selenicereus undatus HOM05D007680 ORTHO05D009702 1.3e-13 80.5 67 59.7
PSO384G1244 Papaver somniferum HOM05D007680 ORTHO05D009702 2.2e-13 79.7 74 66.2
Lsat_1_v5_gn_2_102521 Lactuca sativa HOM05D007680 ORTHO05D009702 3.7e-13 79.0 69 60.9
AUR62043943 Chenopodium quinoa HOM05D000002 ORTHO05D000001 4.8e-13 78.6 55 65.5
SEGI_03872 Sequoiadendron giganteum HOM05D007680 ORTHO05D009702 8.2e-13 77.8 59 71.2
A01p00970 Brassica napus HOM05D007680 ORTHO05D009702 1.1e-12 77.4 69 71.0
BolC1t00107H Brassica oleracea HOM05D007680 ORTHO05D009702 1.1e-12 77.4 67 73.1
BraA01t00095Z Brassica rapa HOM05D007680 ORTHO05D009702 1.1e-12 77.4 69 71.0
C01p01090 Brassica napus HOM05D007680 ORTHO05D009702 2.4e-12 76.3 67 71.6
Lj6g0009049 Lotus japonicus HOM05D007680 ORTHO05D009702 6.5e-10 68.2 129 40.3
Zm00001eb411120 Zea mays HOM05D007680 ORTHO05D009702 8.5e-10 67.8 70 60.0
MD07G1069500 Malus domestica HOM05D007680 ORTHO05D009702 3.2e-09 65.9 58 63.8
arahy.Tifrunner.gnm1.ann1.UIS3VC Arachis hypogaea HOM05D007680 ORTHO05D009702 1.6e-08 63.5 64 56.2
Os12g0206700 Oryza sativa ssp. japonica HOM05D007680 ORTHO05D009702 1.6e-08 63.5 70 55.7
Zm00001eb004510 Zea mays HOM05D007680 ORTHO05D009702 1.8e-07 60.1 70 57.1
Glyma.10G104651 Glycine max HOM05D007680 ORTHO05D009702 3.0e-07 59.3 153 52.3
SGA_v2.0_scaffold10G05320 Striga asiatica HOM05D007680 ORTHO05D009702 2.0e-06 56.6 42 59.5
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 4.3e-06 55.5 34 67.6


User provided reference genes

Program Settings