Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1707.2 860 100.0
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1509.6 936 84.4
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1486.9 860 87.6
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1452.2 884 83.8
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1303.9 855 77.0
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1290.4 854 75.5
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1288.1 850 75.5
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1268.4 849 75.9
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1265.0 856 74.1
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1258.8 849 73.6
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1253.4 865 73.8
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1251.1 849 73.5
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1250.7 864 74.1
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1248.8 855 74.3
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1246.9 855 74.3
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 0.0e+00 1245.7 858 73.7
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1241.1 852 73.6
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1235.3 855 73.6
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1233.8 883 71.9
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1229.9 816 75.7
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1228.8 859 73.2
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1225.3 851 71.9
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1222.2 856 72.8
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 0.0e+00 1219.9 769 79.6
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1219.5 856 72.7
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1217.6 854 72.8
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1216.1 856 72.7
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1213.0 855 72.6
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1209.5 842 73.2
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 0.0e+00 1203.0 863 71.8
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1202.6 849 71.3
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 0.0e+00 1196.4 767 77.4
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1192.9 863 71.6
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1191.4 855 71.6
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 0.0e+00 1189.9 851 70.7
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 0.0e+00 1186.4 871 70.0
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1182.5 833 71.5
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1179.5 867 70.5
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1178.3 849 70.2
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 0.0e+00 1177.5 854 70.8
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1177.5 849 70.8
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 0.0e+00 1174.8 852 70.9
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 0.0e+00 1174.1 855 70.2
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 0.0e+00 1166.0 853 70.2
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1164.1 852 70.1
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 0.0e+00 1161.4 854 69.1
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1160.2 852 70.0
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 0.0e+00 1159.4 854 69.0
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1156.7 841 69.6
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1155.6 861 67.4
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1154.8 852 69.2
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 0.0e+00 1153.7 856 69.0
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1151.7 853 67.8
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 0.0e+00 1150.6 856 68.6
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 0.0e+00 1150.6 958 64.6
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 0.0e+00 1150.2 863 67.1
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 0.0e+00 1148.7 850 68.9
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1147.9 850 67.8
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1147.9 837 69.4
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 0.0e+00 1147.1 854 69.1
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1143.6 854 67.8
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1140.9 849 69.7
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 0.0e+00 1137.5 761 76.9
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 0.0e+00 1137.1 860 67.1
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1136.7 863 67.4
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1135.9 851 68.0
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1135.6 852 68.4
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1130.2 857 66.3
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 0.0e+00 1125.5 853 68.5
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 0.0e+00 1125.2 910 65.1
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 0.0e+00 1119.4 847 68.1
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1113.6 727 75.9
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 0.0e+00 1113.2 849 68.1
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 0.0e+00 1112.8 841 67.3
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1112.8 841 67.3
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1112.8 854 68.0
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1109.7 854 67.7
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1109.4 866 67.0
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1104.7 870 66.9
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1103.2 762 73.4
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 0.0e+00 1098.6 855 66.2
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1097.8 850 65.6
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1093.2 817 68.3
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 0.0e+00 1092.0 1009 60.7
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 0.0e+00 1087.8 841 66.9
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 0.0e+00 1087.0 849 65.5
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 0.0e+00 1078.5 703 76.7
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 0.0e+00 1077.8 930 63.0
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 5.9e-312 1073.5 739 71.4
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.2e-311 1072.8 849 65.0
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 1.5e-310 1069.3 946 61.0
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 2.2e-309 1065.4 875 63.7
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 2.9e-309 1065.1 853 64.5
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 3.8e-309 1064.7 855 64.1
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 1.4e-308 1062.8 849 63.6
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 3.2e-308 1061.6 853 64.5
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 2.1e-307 1058.9 850 64.6
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 2.7e-307 1058.5 856 64.0
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 2.7e-307 1058.5 856 64.0
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 1.0e-306 1056.6 853 64.1
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 3.1e-303 1045.0 864 63.5
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 6.9e-303 1043.9 847 63.9
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 2.9e-301 1038.5 836 63.5
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 1.0e-290 1003.4 759 67.2
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 1.5e-286 989.6 715 69.0
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 6.1e-283 977.6 861 59.9
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 3.8e-277 958.4 720 67.6
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 1.6e-275 953.0 846 59.8
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 2.8e-272 942.2 854 59.1
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 6.9e-271 937.6 853 59.2
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 5.9e-270 934.5 737 64.9
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 2.6e-265 919.1 789 60.3
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 5.5e-260 901.4 697 67.6
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 9.1e-247 857.4 681 64.3
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 1.7e-245 853.2 534 79.8
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 5.2e-234 815.1 849 53.6
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 3.3e-228 795.8 857 50.5
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 2.7e-222 776.2 774 56.2
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 1.1e-210 737.6 539 69.0
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 1.8e-210 736.9 866 47.7
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 1.4e-207 727.2 860 48.0
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 4.2e-199 699.1 871 45.8
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 9.3e-199 698.0 473 74.6
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.6e-179 634.0 758 48.9
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 2.6e-177 626.7 444 72.5
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 2.2e-168 597.0 469 64.6
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 1.1e-159 568.2 453 64.9
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 3.2e-159 566.6 541 56.7
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 3.2e-159 566.6 824 42.0
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.4e-157 561.2 464 62.5
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 5.1e-157 559.3 392 71.4
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 4.4e-156 556.2 385 73.5
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 1.7e-152 544.3 493 60.6
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 6.3e-139 499.2 743 43.2
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 1.2e-121 441.8 461 52.9
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 3.5e-121 440.3 381 58.8
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 4.5e-121 439.9 310 71.0
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.7e-120 438.0 368 64.1
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 1.3e-115 421.8 306 71.2
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 1.4e-114 418.3 357 62.7
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 1.6e-110 404.8 316 68.0
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 9.8e-108 395.6 321 64.2
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 8.7e-88 329.3 287 60.3
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 1.5e-84 318.5 245 66.1
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 7.6e-84 316.2 204 75.0
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 2.4e-66 258.1 176 71.0
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 1.9e-63 248.4 156 76.9
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 4.3e-63 247.3 185 63.8
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 1.3e-62 245.7 224 60.3
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 2.3e-48 198.4 276 48.2
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 5.1e-48 197.2 131 76.3
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 7.7e-44 183.3 520 29.0
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 2.0e-39 168.7 159 60.4
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 2.3e-32 145.2 114 64.9
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 8.2e-30 136.7 128 60.9
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 9.1e-29 133.3 109 64.2
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 1.2e-28 132.9 144 57.6
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 1.7e-27 129.0 72 88.9
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 8.3e-22 110.2 75 72.0
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 1.2e-20 106.3 72 77.8
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 3.6e-17 94.7 60 80.0
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 4.1e-13 81.3 99 43.4
RcHm_v2.0_Chr2g0132831 Rosa chinensis HOM05D004192 ORTHO05D004917 3.3e-10 71.6 58 63.8
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.2e-09 69.7 109 45.0
Lsat_1_v5_gn_6_80241 Lactuca sativa HOM05D004192 ORTHO05D004917 4.4e-07 61.2 44 68.2
TAR633G0581 Trochodendron aralioides HOM05D004192 ORTHO05D004917 4.4e-07 61.2 78 42.3
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 7.5e-07 60.5 32 81.2
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 7.5e-07 60.5 32 81.2
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 7.5e-07 60.5 32 81.2
Oeu032726.1 Olea europaea HOM05D004192 ORTHO05D004917 8.3e-06 57.0 91 50.5


User provided reference genes

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