Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G233400 Populus trichocarpa HOM05D007333 ORTHO05D008874 3.4e-77 291.6 146 100.0
Sabra10G0181000 Salix brachista HOM05D007333 ORTHO05D008874 2.4e-62 242.3 166 77.1
Manes.07G092300 Manihot esculenta HOM05D007333 ORTHO05D008874 1.2e-45 186.8 151 62.3
Manes.10G054600 Manihot esculenta HOM05D007333 ORTHO05D008874 4.5e-37 158.3 143 55.2
CiPaw.14G027900 Carya illinoinensis HOM05D007333 ORTHO05D008874 5.3e-30 134.8 136 50.0
TWI63G0473 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 5.9e-29 131.3 153 46.4
TWI38G1382 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 3.8e-28 128.6 135 51.1
RcHm_v2.0_Chr1g0334731 Rosa chinensis HOM05D007333 ORTHO05D008874 4.2e-27 125.2 131 48.9
Prupe.2G091100 Prunus persica HOM05D007333 ORTHO05D008874 1.6e-26 123.2 138 47.1
Thecc.10G097500 Theobroma cacao HOM05D007333 ORTHO05D008874 1.6e-26 123.2 146 44.5
Duzib114G0443 Durio zibethinus HOM05D007333 ORTHO05D008874 4.7e-26 121.7 145 46.2
Cpa.g.sc128.62 Carica papaya HOM05D007333 ORTHO05D008874 6.1e-26 121.3 140 51.4
Ciclev10032982m.g Citrus clementina HOM05D007333 ORTHO05D008874 7.9e-26 120.9 149 43.6
FAN10G2394 Fragaria x ananassa HOM05D007333 ORTHO05D008874 5.7e-24 114.8 134 47.8
COL.COLO4_34172 Corchorus olitorius HOM05D007333 ORTHO05D008874 7.4e-24 114.4 129 48.8
FAN01G0324 Fragaria x ananassa HOM05D007333 ORTHO05D008874 1.3e-23 113.6 134 47.8
FAN03G1611 Fragaria x ananassa HOM05D007333 ORTHO05D008874 1.7e-23 113.2 134 47.8
FAN06G2923 Fragaria x ananassa HOM05D007333 ORTHO05D008874 1.7e-23 113.2 134 46.3
PGR044G2090 Punica granatum HOM05D007333 ORTHO05D008874 6.3e-23 111.3 138 44.9
Duzib128G0626 Durio zibethinus HOM05D007333 ORTHO05D008874 5.9e-21 104.8 145 41.4
Gohir.D05G290801 Gossypium hirsutum HOM05D007333 ORTHO05D008874 1.3e-20 103.6 134 43.3
Gorai.009G305900 Gossypium raimondii HOM05D007333 ORTHO05D008874 1.3e-20 103.6 134 43.3
CANSAT56G1926 Cannabis sativa HOM05D007333 ORTHO05D008874 3.8e-20 102.1 136 45.6
Atru.chr12.950 Acer truncatum HOM05D007333 ORTHO05D008874 6.5e-20 101.3 143 39.9
ClCG08G008020 Citrullus lanatus HOM05D007333 ORTHO05D008874 5.5e-19 98.2 139 42.4
Gohir.A05G289401 Gossypium hirsutum HOM05D007333 ORTHO05D008874 9.4e-19 97.4 134 41.8
Aa31LG10G7320 Aethionema arabicum HOM05D007333 ORTHO05D008874 2.1e-18 96.3 124 45.2
Carub.0005s1859 Capsella rubella HOM05D007333 ORTHO05D008874 4.7e-18 95.1 107 47.7
CsaV3_2G032900 Cucumis sativus L. HOM05D007333 ORTHO05D008874 8.0e-18 94.4 124 41.1
arahy.Tifrunner.gnm1.ann1.N9I1MN Arachis hypogaea HOM05D007333 ORTHO05D008874 1.8e-17 93.2 161 34.2
arahy.Tifrunner.gnm1.ann1.YB4FNL Arachis hypogaea HOM05D007333 ORTHO05D008874 1.8e-17 93.2 161 34.8
MELO3C019874.2 Cucumis melo HOM05D007333 ORTHO05D008874 3.0e-17 92.4 135 39.3
Lj5g0012880 Lotus japonicus HOM05D007333 ORTHO05D008874 3.9e-17 92.0 140 40.0
THA.LOC104823559 Tarenaya hassleriana HOM05D007333 ORTHO05D008874 3.9e-17 92.0 138 39.1
Eucgr.J01027 Eucalyptus grandis HOM05D007333 ORTHO05D008874 5.2e-17 91.7 145 35.9
Sed0000251 Sechium edule HOM05D007333 ORTHO05D008874 6.7e-17 91.3 110 41.8
Haze_02631 Corylus avellana HOM05D007333 ORTHO05D008874 2.6e-16 89.4 126 43.7
TAR633G0429 Trochodendron aralioides HOM05D007333 ORTHO05D008874 4.4e-16 88.6 137 39.4
Cfa011213 Carpinus fangiana HOM05D018442 ORTHO05D020347 1.7e-15 86.7 101 46.5
Dinv20855 Davidia involucrata HOM05D007333 ORTHO05D008874 4.8e-15 85.1 149 37.6
Ca_10485_v3 Cicer arietinum L. HOM05D007333 ORTHO05D008874 8.2e-15 84.3 140 36.4
Sp5g10030 Schrenkiella parvula HOM05D007333 ORTHO05D008874 8.2e-15 84.3 115 43.5
AL5G32820 Arabidopsis lyrata HOM05D007333 ORTHO05D008874 1.1e-14 84.0 110 42.7
AT3G52230 Arabidopsis thaliana HOM05D007333 ORTHO05D008874 1.1e-14 84.0 105 41.9
Dinv31280 Davidia involucrata HOM05D007333 ORTHO05D008874 1.1e-14 84.0 145 36.6
Lalb_Chr21g0313181 Lupinus albus HOM05D007333 ORTHO05D008874 1.4e-14 83.6 139 34.5
GSVIVG01034686001 Vitis vinifera HOM05D007333 ORTHO05D008874 4.1e-14 82.0 113 42.5
BcaC07g39593 Brassica carinata HOM05D007333 ORTHO05D008874 5.3e-14 81.6 126 38.9
Lalb_Chr06g0170141 Lupinus albus HOM05D007333 ORTHO05D008874 7.0e-14 81.3 149 34.2
CARHR162000 Cardamine hirsuta HOM05D007333 ORTHO05D008874 1.2e-13 80.5 89 44.9
QL04p040607 Quercus lobata HOM05D007333 ORTHO05D008874 1.2e-13 80.5 102 43.1
Hma1.2p1_0567F.1_g180010 Hydrangea macrophylla HOM05D007333 ORTHO05D008874 2.0e-13 79.7 104 40.4
Lsat_1_v5_gn_2_102881 Lactuca sativa HOM05D007333 ORTHO05D008874 2.0e-13 79.7 137 37.2
Sc20g0001370 Simmondsia chinensis HOM05D007333 ORTHO05D008874 2.6e-13 79.3 125 36.8
A09p45290 Brassica napus HOM05D007333 ORTHO05D008874 3.5e-13 79.0 116 38.8
C08p27470 Brassica napus HOM05D007333 ORTHO05D008874 5.9e-13 78.2 126 38.1
Lsat_1_v5_gn_8_23060 Lactuca sativa HOM05D007333 ORTHO05D008874 5.9e-13 78.2 130 37.7
BolC8t50364H Brassica oleracea HOM05D007333 ORTHO05D008874 1.0e-12 77.4 148 36.5
Migut.F01662 Erythranthe guttata HOM05D007333 ORTHO05D008874 1.3e-12 77.0 140 37.9
Ah.06g184540 Amaranthus hybridus HOM05D007333 ORTHO05D008874 2.2e-12 76.3 121 38.8
BraA09t39992Z Brassica rapa HOM05D007333 ORTHO05D008874 3.8e-12 75.5 116 37.1
MSTRG.408 Avicennia marina HOM05D007333 ORTHO05D008874 6.5e-12 74.7 133 34.6
Oeu015044.1 Olea europaea HOM05D007333 ORTHO05D008874 8.5e-12 74.3 134 37.3
vmacro10268 Vaccinium macrocarpon HOM05D007333 ORTHO05D008874 8.5e-12 74.3 138 37.7
DCAR_019045 Daucus carota HOM05D007333 ORTHO05D008874 1.5e-11 73.6 119 37.0
HanXRQChr14g0456271 Helianthus annuus HOM05D007333 ORTHO05D008874 1.5e-11 73.6 126 38.9
Cc02_g10320 Coffea canephora HOM05D007333 ORTHO05D008874 1.9e-11 73.2 86 37.2
Phvul.007G105600 Phaseolus vulgaris HOM05D007333 ORTHO05D008874 1.9e-11 73.2 128 32.8
Aqoxy2G01500 Aquilegia oxysepala HOM05D007333 ORTHO05D008874 2.5e-11 72.8 145 33.1
Glyma.20G188900 Glycine max HOM05D007333 ORTHO05D008874 5.5e-11 71.6 142 28.9
Nitab4.5_0000593g0040 Nicotiana tabacum HOM05D007333 ORTHO05D008874 5.5e-11 71.6 149 34.9
Medtr1g492600 Medicago truncatula HOM05D007333 ORTHO05D008874 9.4e-11 70.9 135 34.8
Glyma.10G201500 Glycine max HOM05D007333 ORTHO05D008874 1.2e-10 70.5 142 30.3
Medtr1g492630 Medicago truncatula HOM05D007333 ORTHO05D008874 1.2e-10 70.5 130 35.4
Oeu030485.1 Olea europaea HOM05D007333 ORTHO05D008874 1.2e-10 70.5 147 35.4
Thhalv10010807m.g Eutrema salsugineum HOM05D007333 ORTHO05D008874 1.6e-10 70.1 119 36.1
MBI17_g20230_MAGBIO Magnolia biondii HOM05D007333 ORTHO05D008874 1.6e-10 70.1 74 45.9
Nitab4.5_0003408g0030 Nicotiana tabacum HOM05D007333 ORTHO05D008874 1.6e-10 70.1 130 34.6
TPR.G2540 Trifolium pratense HOM05D007333 ORTHO05D008874 1.6e-10 70.1 146 30.8
unitig_746.g26629 Utricularia gibba HOM05D007333 ORTHO05D008874 2.1e-10 69.7 67 52.2
Actinidia34782 Actinidia chinensis HOM05D007333 ORTHO05D008874 2.7e-10 69.3 152 37.5
VMungo0720G1448 Vigna mungo HOM05D007333 ORTHO05D008874 2.7e-10 69.3 138 28.3
A04p07130 Brassica napus HOM05D007333 ORTHO05D008874 1.0e-09 67.4 59 52.5
ECA238G3189 Erigeron canadensis HOM05D007333 ORTHO05D008874 1.8e-09 66.6 101 37.6
Nn2g13958 Nelumbo nucifera HOM05D007333 ORTHO05D008874 1.8e-09 66.6 141 34.8
Actinidia38900 Actinidia chinensis HOM05D007333 ORTHO05D008874 2.3e-09 66.2 152 36.2
ECA233G0976 Erigeron canadensis HOM05D007333 ORTHO05D008874 3.0e-09 65.9 133 33.8
SGA_v2.0_scaffold62G21322 Striga asiatica HOM05D007333 ORTHO05D008874 3.0e-09 65.9 92 43.5
Nn6g35090 Nelumbo nucifera HOM05D007333 ORTHO05D008874 4.0e-09 65.5 142 33.1
SalBow6G6510 Salvia bowleyana HOM05D007333 ORTHO05D008874 5.2e-09 65.1 69 47.8
PGSC0003DMG402027350 Solanum tuberosum HOM05D007333 ORTHO05D008874 5.2e-09 65.1 122 34.4
Ciclev10010649m.g Citrus clementina HOM05D007333 ORTHO05D008874 1.5e-08 63.5 104 35.6
Ciclev10029520m.g Citrus clementina HOM05D007333 ORTHO05D008874 1.5e-08 63.5 105 35.2
FvH4_7g06450 Fragaria vesca HOM05D007333 ORTHO05D008874 1.5e-08 63.5 98 38.8
SEGI_06473 Sequoiadendron giganteum HOM05D007333 ORTHO05D008874 1.5e-08 63.5 78 41.0
HanXRQChr08g0218141 Helianthus annuus HOM05D007333 ORTHO05D008874 3.3e-08 62.4 115 35.7
QL08p037183 Quercus lobata HOM05D018442 ORTHO05D020347 4.4e-08 62.0 93 36.6
Peaxi162Scf00398g00057 Petunia axillaris HOM05D007333 ORTHO05D008874 9.7e-08 60.8 124 33.9
Solyc11g007680.2 Solanum lycopersicum HOM05D007333 ORTHO05D008874 9.7e-08 60.8 132 33.3
HPP92_009761 Vanilla planifolia HOM05D065211 ORTHO05D008874 9.7e-08 60.8 68 41.2
Sopen11g003540 Solanum pennellii HOM05D007333 ORTHO05D008874 1.7e-07 60.1 127 33.9
EL10Ac4g08229 Beta vulgaris HOM05D034697 ORTHO05D008874 1.1e-06 57.4 136 33.1
PSO339G5821 Papaver somniferum HOM05D007333 ORTHO05D008874 1.1e-06 57.4 88 36.4
Psat6g175280 Pisum sativum HOM05D007333 ORTHO05D008874 1.1e-06 57.4 84 34.5
Sed0004459 Sechium edule HOM05D027254 ORTHO05D028888 1.1e-06 57.4 85 32.9
CSS0002382 Camellia sinensis var. sinensis HOM05D007333 ORTHO05D008874 4.1e-06 55.5 125 31.2


User provided reference genes

Program Settings