Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 7.6e-55 216.9 104 100.0
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 2.7e-36 155.2 104 74.0
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.5e-18 96.3 102 51.0
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 1.9e-18 95.9 95 50.5
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 5.7e-18 94.4 94 54.3
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 1.6e-17 92.8 100 49.0
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 1.6e-17 92.8 99 46.5
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 4.8e-17 91.3 101 48.5
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 1.4e-16 89.7 103 49.5
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 1.4e-16 89.7 103 49.5
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 1.8e-16 89.4 102 48.0
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 3.1e-16 88.6 96 49.0
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 5.3e-16 87.8 100 50.0
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 5.3e-16 87.8 100 50.0
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 6.9e-16 87.4 108 45.4
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 6.9e-16 87.4 113 41.6
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 6.9e-16 87.4 103 47.6
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 9.0e-16 87.0 100 50.0
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 1.2e-15 86.7 88 50.0
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 1.5e-15 86.3 113 46.0
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 1.5e-15 86.3 108 49.1
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 2.0e-15 85.9 99 48.5
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 4.5e-15 84.7 113 40.7
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 4.5e-15 84.7 56 69.6
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 4.5e-15 84.7 108 45.4
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 7.7e-15 84.0 109 46.8
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.3e-14 83.2 103 46.6
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.3e-14 83.2 89 48.3
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 2.9e-14 82.0 108 45.4
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 2.9e-14 82.0 95 46.3
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.9e-14 82.0 95 46.3
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.9e-14 82.0 95 46.3
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 2.9e-14 82.0 110 43.6
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 8.5e-14 80.5 92 46.7
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 1.1e-13 80.1 76 55.3
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 1.1e-13 80.1 122 41.8
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.1e-13 80.1 102 45.1
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.1e-13 80.1 102 45.1
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 1.1e-13 80.1 93 47.3
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.4e-13 79.7 102 45.1
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 1.4e-13 79.7 106 43.4
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.9e-13 79.3 89 47.2
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.9e-13 79.3 97 44.3
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 1.9e-13 79.3 98 43.9
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.5e-13 79.0 97 44.3
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 2.5e-13 79.0 112 44.6
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 4.2e-13 78.2 101 47.5
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 4.2e-13 78.2 109 42.2
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 5.5e-13 77.8 106 46.2
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 7.2e-13 77.4 58 67.2
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 9.4e-13 77.0 105 46.7
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 9.4e-13 77.0 107 45.8
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.2e-12 76.6 67 55.2
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 1.2e-12 76.6 96 45.8
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.6e-12 76.3 65 56.9
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.7e-12 75.5 101 44.6
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 4.6e-12 74.7 75 46.7
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.1e-12 74.3 60 60.0
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 7.9e-12 73.9 102 40.2
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 7.9e-12 73.9 103 41.7
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 7.9e-12 73.9 94 44.7
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 1.0e-11 73.6 97 50.5
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 1.4e-11 73.2 78 48.7
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.8e-11 72.8 106 45.3
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 2.3e-11 72.4 89 41.6
Lalb_Chr03g0036331 Lupinus albus HOM05D005304 ORTHO05D004438 2.3e-11 72.4 107 42.1
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.0e-11 72.0 61 55.7
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.0e-11 72.0 61 55.7
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 3.9e-11 71.6 62 54.8
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 3.9e-11 71.6 121 38.0
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 3.9e-11 71.6 100 45.0
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 3.9e-11 71.6 72 50.0
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 5.1e-11 71.2 68 52.9
PGSC0003DMG400023483 Solanum tuberosum HOM05D005304 ORTHO05D004438 5.1e-11 71.2 93 47.3
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.7e-11 70.9 57 57.9
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 8.8e-11 70.5 104 43.3
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 8.8e-11 70.5 86 46.5
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 1.1e-10 70.1 67 49.3
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.5e-10 69.7 85 42.4
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 1.5e-10 69.7 57 61.4
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 2.0e-10 69.3 96 47.9
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 2.0e-10 69.3 100 41.0
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 2.0e-10 69.3 96 47.9
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 2.5e-10 68.9 111 39.6
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 2.5e-10 68.9 98 41.8
BcaNung04931 Brassica carinata HOM05D008699 ORTHO05D012283 3.3e-10 68.6 104 41.3
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 5.7e-10 67.8 60 58.3
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 5.7e-10 67.8 69 53.6
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 5.7e-10 67.8 55 61.8
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 9.7e-10 67.0 76 44.7
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 1.3e-09 66.6 73 52.1
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 1.3e-09 66.6 68 55.9
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 1.3e-09 66.6 55 58.2
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 1.3e-09 66.6 98 44.9
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 1.3e-09 66.6 98 44.9
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 2.8e-09 65.5 56 55.4
PGSC0003DMG400016914 Solanum tuberosum HOM05D005304 ORTHO05D004438 2.8e-09 65.5 102 43.1
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 3.7e-09 65.1 55 58.2
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 3.7e-09 65.1 61 57.4
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 3.7e-09 65.1 55 56.4
C05p57520 Brassica napus HOM05D008699 ORTHO05D012283 4.8e-09 64.7 106 40.6
BolC5t34409H Brassica oleracea HOM05D008699 ORTHO05D012283 4.8e-09 64.7 106 40.6
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 4.8e-09 64.7 58 55.2
BcaB04g21232 Brassica carinata HOM05D008699 ORTHO05D012283 8.2e-09 63.9 105 39.0
BcaNung04932 Brassica carinata HOM05D008699 ORTHO05D012283 8.2e-09 63.9 105 39.0
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 1.1e-08 63.5 54 61.1
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 1.1e-08 63.5 70 51.4
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 1.1e-08 63.5 68 51.5
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 1.4e-08 63.2 101 39.6
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 1.4e-08 63.2 63 57.1
BcaC05g29454 Brassica carinata HOM05D008699 ORTHO05D012283 2.4e-08 62.4 106 39.6
A05p38650 Brassica napus HOM05D008699 ORTHO05D012283 2.4e-08 62.4 106 39.6
BraA05t22656Z Brassica rapa HOM05D008699 ORTHO05D012283 2.4e-08 62.4 106 39.6
Eucgr.B03916 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.4e-08 62.4 93 41.9
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 2.4e-08 62.4 64 48.4
Nitab4.5_0001163g0010 Nicotiana tabacum HOM05D005304 ORTHO05D004438 2.4e-08 62.4 95 42.1
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 3.1e-08 62.0 83 43.4
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 3.1e-08 62.0 98 38.8
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.1e-08 62.0 57 52.6
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 3.1e-08 62.0 98 39.8
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 4.1e-08 61.6 60 51.7
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 4.1e-08 61.6 55 58.2
BolC1t05388H Brassica oleracea HOM05D008699 ORTHO05D012283 5.3e-08 61.2 105 40.0
Eucgr.J00398 Eucalyptus grandis HOM05D005304 ORTHO05D004438 6.9e-08 60.8 79 45.6
Sopen05g033870 Solanum pennellii HOM05D005304 ORTHO05D004438 6.9e-08 60.8 94 47.9
BraA01t04245Z Brassica rapa HOM05D008699 ORTHO05D012283 9.1e-08 60.5 107 40.2
Eucgr.J01032 Eucalyptus grandis HOM05D005304 ORTHO05D004438 9.1e-08 60.5 56 53.6
A01p41700 Brassica napus HOM05D008699 ORTHO05D012283 1.2e-07 60.1 105 39.0
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 1.5e-07 59.7 55 56.4
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 2.0e-07 59.3 57 57.9
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 2.0e-07 59.3 54 50.0
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 3.4e-07 58.5 87 42.5
A03p36610 Brassica napus HOM05D008699 ORTHO05D012283 5.9e-07 57.8 104 36.5
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 5.9e-07 57.8 64 50.0
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 7.7e-07 57.4 75 40.0
BraA08t35439Z Brassica rapa HOM05D010843 ORTHO05D012975 1.3e-06 56.6 56 57.1
Lalb_Chr19g0129331 Lupinus albus HOM05D005304 ORTHO05D004438 1.3e-06 56.6 55 52.7
Atru.chr3.3495 Acer truncatum HOM05D005304 ORTHO05D004438 1.7e-06 56.2 89 43.8
A08p35300 Brassica napus HOM05D010843 ORTHO05D012975 2.2e-06 55.8 56 57.1
BraA03t12826Z Brassica rapa HOM05D008699 ORTHO05D012283 2.2e-06 55.8 104 35.6
Thhalv10009156m.g Eutrema salsugineum HOM05D010843 ORTHO05D012975 2.2e-06 55.8 56 55.4
Gorai.001G117700 Gossypium raimondii HOM05D005304 ORTHO05D004438 2.2e-06 55.8 60 48.3
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 2.9e-06 55.5 72 43.1
BcaC01g04175 Brassica carinata HOM05D008699 ORTHO05D012283 3.8e-06 55.1 106 34.9
C03p44240 Brassica napus HOM05D008699 ORTHO05D012283 3.8e-06 55.1 106 34.9
BolC3t16694H Brassica oleracea HOM05D008699 ORTHO05D012283 3.8e-06 55.1 106 34.9
Eucgr.G02732 Eucalyptus grandis HOM05D005304 ORTHO05D004438 3.8e-06 55.1 101 40.6
PGSC0003DMG400027330 Solanum tuberosum HOM05D005304 ORTHO05D004438 5.0e-06 54.7 97 41.2
Carub.0003s0976 Capsella rubella HOM05D008699 ORTHO05D012283 6.5e-06 54.3 108 36.1
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 6.5e-06 54.3 69 44.9
Actinidia06715 Actinidia chinensis HOM05D005304 ORTHO05D004438 8.5e-06 53.9 49 57.1
Aqoxy4G02913 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 8.5e-06 53.9 78 41.0
BcaB07g34064 Brassica carinata HOM05D010843 ORTHO05D012975 8.5e-06 53.9 56 53.6
DCAR_019059 Daucus carota HOM05D005304 ORTHO05D004438 8.5e-06 53.9 67 47.8
Sp1g06830 Schrenkiella parvula HOM05D010843 ORTHO05D012975 8.5e-06 53.9 56 53.6


User provided reference genes

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