Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 2022.7 1051 100.0
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 0.0e+00 1843.2 1057 90.4
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1744.2 1165 81.5
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1725.7 1077 83.5
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 0.0e+00 1697.2 1061 83.7
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 0.0e+00 1686.0 1077 82.3
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 0.0e+00 1684.8 1074 82.2
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1679.8 1074 81.7
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 0.0e+00 1670.6 1088 80.4
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 0.0e+00 1667.1 1080 80.5
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 0.0e+00 1661.4 1075 81.2
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 0.0e+00 1659.0 1120 80.4
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 0.0e+00 1657.5 1074 80.4
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 0.0e+00 1657.1 1064 81.1
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 0.0e+00 1657.1 1075 80.7
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 0.0e+00 1656.3 1074 81.6
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 0.0e+00 1651.0 1079 79.9
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 0.0e+00 1650.2 1076 81.2
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1643.6 1069 80.4
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1643.6 1073 80.5
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 0.0e+00 1642.9 1070 80.8
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 0.0e+00 1638.2 1079 79.3
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 0.0e+00 1637.5 1071 79.7
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 0.0e+00 1625.1 1081 79.4
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1623.2 1074 79.1
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1620.5 1074 79.1
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 0.0e+00 1617.4 1077 78.3
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 0.0e+00 1612.0 1070 79.5
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 0.0e+00 1609.0 1044 80.5
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 0.0e+00 1608.6 1079 77.2
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1607.4 1076 78.8
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1605.5 1080 77.8
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1602.4 1069 79.2
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 0.0e+00 1596.6 1068 79.3
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 0.0e+00 1593.2 1030 81.1
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 0.0e+00 1588.9 1070 78.4
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 0.0e+00 1581.2 1068 78.3
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1580.1 1070 77.0
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 0.0e+00 1566.2 1074 76.0
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 0.0e+00 1562.4 1074 75.6
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1558.5 1081 75.8
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 0.0e+00 1553.9 1074 75.7
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 0.0e+00 1550.8 1081 75.6
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1548.1 1075 76.9
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 0.0e+00 1548.1 1069 76.1
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1545.8 1072 77.1
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 0.0e+00 1543.9 1080 75.1
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 0.0e+00 1543.9 1075 75.6
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 0.0e+00 1543.1 1077 75.0
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 0.0e+00 1541.6 1077 74.7
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 0.0e+00 1536.9 1072 76.7
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 0.0e+00 1528.1 1074 74.2
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1511.9 1146 71.4
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 0.0e+00 1511.1 1093 73.4
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 0.0e+00 1502.3 1071 73.8
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 0.0e+00 1484.5 1071 72.8
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 0.0e+00 1483.4 1070 73.0
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 0.0e+00 1483.4 1081 73.9
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 0.0e+00 1481.1 1071 73.1
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1476.8 1087 72.0
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1476.5 1087 72.0
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1476.1 1072 72.6
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 0.0e+00 1475.3 1096 72.4
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 0.0e+00 1469.1 1070 72.5
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 0.0e+00 1467.6 1075 74.0
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1467.2 1105 71.0
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 0.0e+00 1462.6 1076 71.7
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1458.4 1106 70.3
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1453.3 1072 71.5
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 0.0e+00 1449.9 1090 70.4
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1445.6 1091 70.5
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 0.0e+00 1444.9 984 77.5
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 0.0e+00 1443.7 1070 70.8
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 0.0e+00 1437.9 1070 72.0
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1437.6 1059 72.0
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 0.0e+00 1431.8 1148 69.9
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1429.8 1056 71.8
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1426.8 1070 70.3
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 0.0e+00 1425.6 1090 70.0
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 0.0e+00 1424.5 1090 69.7
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1423.3 1064 72.5
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1413.7 1092 70.6
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 0.0e+00 1413.3 998 74.8
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 0.0e+00 1407.9 1071 70.0
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1405.6 1066 70.4
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 0.0e+00 1403.7 1090 69.4
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 0.0e+00 1394.8 1067 70.0
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1390.2 1078 70.3
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 0.0e+00 1385.2 947 76.3
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 0.0e+00 1373.6 1075 68.7
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 0.0e+00 1373.6 1101 68.7
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1341.3 1051 69.6
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 0.0e+00 1333.9 1106 66.3
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 0.0e+00 1332.4 1040 68.9
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 0.0e+00 1312.4 1072 66.3
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 0.0e+00 1311.2 1174 64.8
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 0.0e+00 1308.9 1069 64.3
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 0.0e+00 1306.2 1051 68.5
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 0.0e+00 1302.7 1074 64.5
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 0.0e+00 1298.5 1073 64.9
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 0.0e+00 1284.6 1027 66.5
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 0.0e+00 1268.4 1060 67.0
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 0.0e+00 1238.4 1261 57.9
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 0.0e+00 1222.6 870 75.1
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 0.0e+00 1189.9 1064 62.0
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 0.0e+00 1169.8 744 81.7
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 0.0e+00 1156.4 905 69.9
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 0.0e+00 1145.6 908 67.0
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 7.9e-309 1063.9 972 63.0
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 4.3e-299 1031.6 742 74.4
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 7.9e-293 1010.7 1092 51.9
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 6.7e-292 1007.7 1076 51.3
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 6.7e-276 954.5 631 79.7
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 1.8e-273 946.4 840 63.6
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 1.7e-266 923.3 1077 48.6
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 2.0e-256 889.8 1070 47.6
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 2.6e-251 872.8 772 64.6
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 5.5e-246 855.1 1047 46.5
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 1.7e-223 780.4 566 74.6
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 3.2e-217 759.6 565 71.9
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 1.3e-215 754.2 515 75.3
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 2.3e-212 743.4 583 69.6
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 2.1e-205 720.3 563 69.8
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 5.8e-203 712.2 706 57.5
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 5.3e-196 689.1 522 72.2
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 2.3e-191 673.7 840 50.6
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 2.0e-187 660.6 803 47.7
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 2.0e-187 660.6 1229 35.9
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 1.5e-174 617.8 423 75.2
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 1.2e-160 571.6 400 75.0
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 5.9e-155 552.7 372 78.5
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 1.2e-142 511.9 346 78.0
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.5e-134 485.0 392 64.5
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 9.8e-126 455.7 359 69.6
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 1.0e-122 445.7 320 75.0
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 9.8e-118 429.1 353 69.7
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 8.3e-117 426.0 366 65.8
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 1.4e-111 408.7 280 78.6
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 5.2e-111 406.8 280 77.1
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 3.6e-96 357.5 369 54.5
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 1.5e-81 308.9 228 71.1
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 1.9e-76 292.0 177 83.1
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 2.4e-68 265.0 194 74.7
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 2.2e-61 241.9 143 83.9
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 1.0e-58 233.0 162 73.5
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 5.9e-54 217.2 130 83.1
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 6.5e-53 213.8 129 86.0
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 3.2e-52 211.5 128 83.6
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 1.2e-46 193.0 139 69.1
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 3.8e-37 161.4 141 62.4
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 6.5e-37 160.6 103 76.7
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 6.1e-35 154.1 104 74.0
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 8.0e-35 153.7 86 82.6
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 1.4e-34 152.9 179 49.7
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 6.7e-34 150.6 111 71.2
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 8.8e-34 150.2 85 84.7
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 2.0e-33 149.1 169 51.5
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 9.1e-31 140.2 87 75.9
Lj6g0023100 Lotus japonicus HOM05D003976 ORTHO05D004711 8.5e-29 133.7 104 65.4
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 8.5e-29 133.7 93 75.3
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 6.1e-27 127.5 87 77.0
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 1.8e-26 125.9 215 33.0
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 2.6e-25 122.1 107 57.0
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 2.6e-25 122.1 79 72.2
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 7.5e-25 120.6 86 67.4
Cc06_g17220 Coffea canephora HOM05D003976 ORTHO05D004711 3.2e-20 105.1 81 63.0
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 4.0e-18 98.2 99 56.6
Lalb_Chr21g0313561 Lupinus albus HOM05D003976 ORTHO05D004711 6.3e-16 90.9 82 59.8
Lalb_Chr21g0313691 Lupinus albus HOM05D003976 ORTHO05D004711 6.3e-16 90.9 82 59.8
Hma1.2p1_0384F.1_g140760 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 2.4e-15 89.0 49 89.8
vmacro16680 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 2.0e-14 85.9 64 68.8
vmacro23142 Vaccinium macrocarpon HOM05D002957 ORTHO05D007941 2.0e-14 85.9 64 68.8
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 2.5e-12 79.0 71 56.3
Cc03_g09730 Coffea canephora HOM05D003976 ORTHO05D004711 1.6e-11 76.3 58 65.5
TPR.G6473 Trifolium pratense HOM05D003976 ORTHO05D004711 3.0e-10 72.0 48 75.0
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 9.8e-09 67.0 53 62.3
HanXRQChr05g0134171 Helianthus annuus HOM05D003976 ORTHO05D004711 3.7e-08 65.1 52 67.3
MBI18_g27470_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 1.6e-06 59.7 49 55.1


User provided reference genes

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